rna864, rna864 (mRNA) Nannochloropsis gaditana

Overview
Namerna864
Unique Namerna864
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1408
Alignment locationCM002456.1:596317..598697 +

Link to JBrowse

Properties
Property NameValue
Productdna-binding horma domain-containing protein
Orig transcript idgnl|cribi|Naga_100017g56.355.mrna
Orig protein idgnl|cribi|Naga_100017g56.355
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:596317..598697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100017g56gene827Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna864rna864-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29857.1cds864Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna864 ID=rna864|Name=rna864|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp
CCTGCAGGCGAGCGCCTCAACCACTAACCCTCCCTCGCCCAGCCCCTCCC
CTCCCTTCTTTTTCGATCGCATGGAAGCCGTGCCGGAGCACCCTCGCTTT
CGCTCCTCCCTTCAGGGTTTTATTTTGATTGGCATGTTGCCTGTGGTTTT
ACCTCTCTGCTTGGTCCCACTGGTTTGTGGAAGGGGCAGCTTGTGACAGA
AGGAGGCTCTCCATCCTACGAGTTGCTTCCATCAGCCTGCTTTCCCTCAG
TGCCTCGCAGCCGCCACGGCCACCTATATTTTCCTTACCACATTCAAAAG
CATGGCAAAGCTTCGATGTCGATGGCTTTGAGAATAGGGCACCCTTTGTG
CCAAACGTTTGGCCCCCAAAGTGCTCTTGGACGTGGAAGAGTATCATTCC
GCCCGTGTTCTCTGTGGTCTTAGTATCAACTGCCAAATTCACTCTTGCAG
GCCTACGTACACTCTCTAGGCCAATCCCAGCAGCAGTGACAGCAGCCGCA
GCAGTATGGCGGACGGGATTGATGCCGCCCGCGCGCGCATGATAGCAAAG
CGCTTTGGGGGAGCCGAGAACGTGAGAACAGGAGGCAAGGGGACGGTGCG
ACGGAAGCGTAAGGCGCAGCACAAGACTTCTTCGACTGCGGACGACAAGA
AACTCGGTGCAACGCTTAAGAAGCTGGGTGTGACAAACATCCCGGGCATA
GAGGAGGCGAACATGTTTAAGAATACCGGGGAGGTCATCCATTTCAGAAA
CCCTAAGGTGCAAGCGTCTATCCAGGCCAAGACATACGTCATCAGCGGTG
CCGCAGAGACAAAAAGCATCCAAGACCTTCTTCCAGGTATCATCCAACAG
TTGGGAGGTGAAAATATTCAGGCTTTGAGCAAGCAACTGGGTGAGCTCGC
CAAGGGTGGGGGTCTGGACCCGGCACTGGCGGGCATGGAGGAGGGAGAGA
ATGAAGAGGACGATGATGATGCGGTTCCCGACTTGGTCGAGAATTTTGAG
GCCGTCTCGACGTAAGAGGGTTTTATGATCGCTCCTCAATGCCAATCTTC
TTCTTCTCTACTTCCTCACTTGCTATGCAGTCCAAGGGAGTAGAAAGGTA
GATCAAAGTCCGAGAAAGGGCAGGTTTTCTGAGGGCTGAATCTTTCATTT
CTGAGGGCCTGATATGTGGGTCGAGCGGGGAGTGCGCCGTTCACGTTCAT
TGCTCTCGTCAATCGTGAAACCATCTTTTAAAATATGCATGCAACTTCAT
TTGGTGGAGAAGAGAGCATGGTGCGTAGAGGCATTAGCTTTCCGTCGTTG
GAATCAGAGTAGGGGAACCGACCAGACAAAATAGACTTAAGGCACGCTGG
CAACGATGAGACCAGGCGGAGATTCAGAAAGAAAGAACTCTTACAACTTA
ATTGAGCC
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protein sequence of rna864

>rna864-protein ID=rna864-protein|Name=rna864|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MSFAVPAASMSSTPAAPAADNSVITLRGSTDIVVEFFEHAITCILYQRGI
YPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVV
VTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQI
TCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRS
VNTKVHKVDTMVAYRMEPAGQG
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mRNA from alignment at CM002456.1:596317..598697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna864 ID=rna864|Name=rna864|organism=Nannochloropsis gaditana|type=mRNA|length=2381bp|location=Sequence derived from alignment at CM002456.1:596317..598697+ (Nannochloropsis gaditana)
GCACGTCTTTCTCTGTAGATTTTATCATCTACTGCGACACTTACGGTGCC
TGATACTGAATCATCGGAATTTAAACCTTATATCTGTCACGTTCGGCATG
GTTTCTTCGTTCTGGTCTTCACTCCGCTGCTTTTCCAGCCCGGGGCATCT
TTCTGGTGTATAGAGCAGGGCAATGACATGACATGGTTTCTATTGTTTCC
CGCCAGGTTTGACCGAAGTAAGGCTCATACTTACTGTGCATTCTCATCAT
CGTCGTACTAGATAGGGCGGTTGGGCATGGTAAGTCGGTACCTGATGCCA
GTAAAGGAACGCCAGGAGATCGCCGCAAACACAAGTTCTCTAATTTttta
tctcctcctcctctccgcacTTCAGTCTTTTGCTGTCCCTGCAGCAAGCA
TGTCGTCAACGCCTGCAGCCCCTGCTGCTGACAACAGTGTGATCACTCTG
CGCGGGTCTACGGACATAGTGGTTGAATTCTTCGAGCACGCCATCACCTG
CATTCTCTATCAGCGCGGCATATACCCTCCTGAGGACTTCGAACGCAAGA
CCAAGTATGGCCTTGCGTTACACGTCGCCAGAGAGGAGGGCTTAGTAACG
TACTTAAAAAATGTACTTGAACAACTTCGGCAGTGGCTGACCTCCAGCAA
CGTGCAAAAGCTGGTGGTTGTCGTGACGGGCATGGAGTCGCAGGCCGTGC
TCGAACGGTGGGTCTTCAGTGTCGATACCGCCCAGGAGGCAGCGACGAAT
CCACAAGGGTACCAGGCCCAAAAATCACAAAAGGAGATCACGAGTGAAAT
CGCGGCGATCATCCGACAAATAACCTGCTCCGTGTCGTTCATGCCCTTGC
TCGCTGAGCGCTGCTCGTTCGACCTGCTCGTGTATACGGACAAGGACGTG
TTGGTGCCTGCCACCTGGGAGGATTCGGACCCGCGGCTCATCCAGCAAGC
CGAGGAGGTCCGCTTGCGTTCGGTGAACACCAAGGTGCACAAGGTGGATA
CTATGGTGGCGTATCGCATGGAACCAGCGGGGCAGGGCTGAGGAATGGGA
GCCGGAAAAAGCTTCCAAAAAGTACAAAAATCATACCTTAAGGGTTGCTG
TCGTGGCTGCTGATTATGAAATACATGAAGTCTCACTGTATTGCAAGAGT
TTGGTCGGTAGATGAGAAACGCGACAGCAAAAAATATGTACAAAGGGAtc
aggaaggcgaggctAACGAGGTAAGCTTCGAGGGTCTAGGTGCACGTTTA
GGAATTTTTGtcgcgaaggaaggagtgagTTTTGAGGTTTAAGTCAAAGT
TTCAGAGACATCAGTTACCCTTGTGCTTACGAAACGTATGTGAGCAtgca
ttttttctttttctgccAGGAAGAGTGGGCAAATTATACATATATTGTCG
AAATGTTGGTGGTACATTCGTTCAAAAAGCTCGCCGTGATGTTTGACTTT
AGCTCCAATCCTGCGGGTGAACCGCGGCAAATAGCGGCCCCCGTATCCCC
TCGTGACAACTTagcccttctccctcgtctcccggGGTGAGTCTCGAGCT
TCTTCCAACACGTCCTTTAAGATCATCACGAAGCGCCACACGTCCACAAA
GCGTGTGTATAAGGGGGAAGGTGCAACGCGGATGACGTTGGGATGCCGCA
CATCGCCCATGACCCCACGGGCCTCAAGCGCCTCCAGGACCTGTGCAGCC
TCCAGCCTCTCCACCTTGAACGTCAGGGACAGCTGGCACCCCCTTTCTTC
GGACGCCGCTGGCGTAATGATCTGCACTGTGTCTGACAACGTTTGCTCGA
GCAAGAGCTGCAGGTATCCTGTCAGGAGGACGGACTTCTTCCGCAACGCA
GGCATCCCCCCGGCGGCCTTGAAGAGTCTGAGGGCGCTTTCCAAGCATGC
GAGCAtcagcggggagggagtcgaGAGCTGGAAACCCAGGGCACCGGGAG
CGGGCTCAAACATGGCTTCATTGAACGTAAAGCGCGCGGCTTTGGCTTGC
CCCCACCACCCAGCCAGGCGCGGCAGAGGTGGCGTTCTCTTTGTATGTTT
CTCGTGGACATACACCCCCCCTACTGCTCCAGGCCCCGCGCACATGTACT
TGTAATGGCACCAACATGCGAAATCAACACCCCACTCATGGAGATGTAAC
TCAACGTTTCCGATCGCATGGGCCAAGTCAAAGCCAACCAGGATTCCTTG
AGCGTGGGCTGCCGCCGTGATTCCCGACATGTCAAAACATTGTCCAGAGG
CGAAATGCAAGCCactgaggaagaggagagcggtATCTTTTCCATGATCT
TTGAGAAAGGTAATAATGTCAGATGCCCGCCAAGTGGACTCGCCAGGCCG
GCGTCGGATAATGAGAAGGAagtcgtcctca
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Coding sequence (CDS) from alignment at CM002456.1:596317..598697+

>rna864 ID=rna864|Name=rna864|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002456.1:596317..598697+ (Nannochloropsis gaditana)
ATGTCTTTTGCTGTCCCTGCAGCAAGCATGTCGTCAACGCCTGCAGCCCC
TGCTGCTGACAACAGTGTGATCACTCTGCGCGGGTCTACGGACATAGTGG
TTGAATTCTTCGAGCACGCCATCACCTGCATTCTCTATCAGCGCGGCATA
TACCCTCCTGAGGACTTCGAACGCAAGACCAAGTATGGCCTTGCGTTACA
CGTCGCCAGAGAGGAGGGCTTAGTAACGTACTTAAAAAATGTACTTGAAC
AACTTCGGCAGTGGCTGACCTCCAGCAACGTGCAAAAGCTGGTGGTTGTC
GTGACGGGCATGGAGTCGCAGGCCGTGCTCGAACGGTGGGTCTTCAGTGT
CGATACCGCCCAGGAGGCAGCGACGAATCCACAAGGGTACCAGGCCCAAA
AATCACAAAAGGAGATCACGAGTGAAATCGCGGCGATCATCCGACAAATA
ACCTGCTCCGTGTCGTTCATGCCCTTGCTCGCTGAGCGCTGCTCGTTCGA
CCTGCTCGTGTATACGGACAAGGACGTGTTGGTGCCTGCCACCTGGGAGG
ATTCGGACCCGCGGCTCATCCAGCAAGCCGAGGAGGTCCGCTTGCGTTCG
GTGAACACCAAGGTGCACAAGGTGGATACTATGGTGGCGTATCGCATGGA
ACCAGCGGGGCAGGGCTGAATGTCTTTTGCTGTCCCTGCAGCAAGCATGT
CGTCAACGCCTGCAGCCCCTGCTGCTGACAACAGTGTGATCACTCTGCGC
GGGTCTACGGACATAGTGGTTGAATTCTTCGAGCACGCCATCACCTGCAT
TCTCTATCAGCGCGGCATATACCCTCCTGAGGACTTCGAACGCAAGACCA
AGTATGGCCTTGCGTTACACGTCGCCAGAGAGGAGGGCTTAGTAACGTAC
TTAAAAAATGTACTTGAACAACTTCGGCAGTGGCTGACCTCCAGCAACGT
GCAAAAGCTGGTGGTTGTCGTGACGGGCATGGAGTCGCAGGCCGTGCTCG
AACGGTGGGTCTTCAGTGTCGATACCGCCCAGGAGGCAGCGACGAATCCA
CAAGGGTACCAGGCCCAAAAATCACAAAAGGAGATCACGAGTGAAATCGC
GGCGATCATCCGACAAATAACCTGCTCCGTGTCGTTCATGCCCTTGCTCG
CTGAGCGCTGCTCGTTCGACCTGCTCGTGTATACGGACAAGGACGTGTTG
GTGCCTGCCACCTGGGAGGATTCGGACCCGCGGCTCATCCAGCAAGCCGA
GGAGGTCCGCTTGCGTTCGGTGAACACCAAGGTGCACAAGGTGGATACTA
TGGTGGCGTATCGCATGGAACCAGCGGGGCAGGGCTGA
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Synonyms
Publications