EWM29857.1, cds864 (CDS) Nannochloropsis gaditana

Overview
NameEWM29857.1
Unique Namecds864
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:596593..596595 +
Alignment locationCM002456.1:596692..597357 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29857.1
Productdna-binding horma domain-containing protein
Orig transcript idgnl|cribi|Naga_100017g56.355.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:596593..596595 +
CM002456.1supercontigCM002456.1:596692..597357 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0007094mitotic spindle assembly checkpoint
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR027097Mad2
IPR003511HORMA_DNA-bd
Homology
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|585112438|gb|EWM29857.1| (dna-binding horma domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 460.299 bits (1183), Expect = 4.376e-164
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MSFAVPAASMSSTPAAPAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYRMEPAGQG 222
            MSFAVPAASMSSTPAAPAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYRMEPAGQG
Sbjct:    1 MSFAVPAASMSSTPAAPAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYRMEPAGQG 222          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|551669998|ref|XP_005837757.1| (hypothetical protein GUITHDRAFT_151073 [Guillardia theta CCMP2712] >gi|428181915|gb|EKX50777.1| hypothetical protein GUITHDRAFT_151073 [Guillardia theta CCMP2712])

HSP 1 Score: 243.817 bits (621), Expect = 9.461e-79
Identity = 116/200 (58.00%), Postives = 152/200 (76.00%), Query Frame = 0
Query:   16 APAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            A AA N+ ITL+GST+IV EFF ++I  ILYQRGIYPPE F +  KYGL + V  + GL  YL+ VL QL +WL + NVQKLV+V+T +E+Q VLERW F ++T ++A   P+  + +KS+++I +EI AIIRQIT SV+F+PLL + C+FDLLVYTD +V VP TWE+SDP+ I   +EVRLRS +TKVHKVD MVAY+
Sbjct:    4 AQAAKNT-ITLKGSTEIVTEFFGYSINSILYQRGIYPPESFAKVNKYGLQMLVTNDSGLQKYLQQVLTQLSEWLYAGNVQKLVLVITSLETQQVLERWNFDIETEKDAVEQPEK-EFEKSERDIMNEIQAIIRQITASVTFLPLLQDACTFDLLVYTDSNVEVPQTWEESDPKYINNQQEVRLRSFSTKVHKVDAMVAYK 201          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|303288706|ref|XP_003063641.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226454709|gb|EEH52014.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 233.032 bits (593), Expect = 2.105e-74
Identity = 116/200 (58.00%), Postives = 151/200 (75.50%), Query Frame = 0
Query:   18 AADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGY-QAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLI-QQAEEVRLRSVNTKVHKVDTMVAYR 215
            A  NS ITL+GST+IV EFF +A+  IL+QRGIYPPE FERK KYGLA+ V+ +E L  YL NVL+Q+  WL    +QKLV+VVT + S+ VLERWVF+++T  +A+       +A+KS+KEI  EI+AIIRQIT SV+F+PLL E C+FDLLVYT+ D  VP  WE+SDPR I + AE+V+LRS +T +HKVD MV+Y+
Sbjct:    7 ATKNS-ITLKGSTEIVSEFFGYAVNSILFQRGIYPPESFERKHKYGLAMLVSTDESLKAYLVNVLQQINDWLMEKKLQKLVLVVTAVGSKEVLERWVFNIETDADASGASGAATRAEKSEKEINQEISAIIRQITASVTFLPLLEEACTFDLLVYTNADSSVPEAWEESDPRYIAENAEQVKLRSFSTSIHKVDGMVSYK 205          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|698776308|ref|XP_009821198.1| (hypothetical protein H257_00293 [Aphanomyces astaci] >gi|574123323|gb|ETV88798.1| hypothetical protein H257_00293 [Aphanomyces astaci])

HSP 1 Score: 230.72 bits (587), Expect = 1.677e-73
Identity = 115/192 (59.90%), Postives = 136/192 (70.83%), Query Frame = 0
Query:   24 ITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            ITLRGS +IV EFF  +I  ILYQRGIYPPE F R +KYGLA+ V  +E L  YLKNVL+QL  WL  S VQKLVVVV    +  +LERW+F V     +A         K  K + SEI AI+RQIT SVSF+PLL + C+FDLLVYTD+DV VP TWE+SDPRL++ + EVRLRS  TKVHKVD MVAY+
Sbjct:   15 ITLRGSAEIVTEFFGFSINNILYQRGIYPPESFTRVSKYGLAMVVTADEKLSAYLKNVLDQLAGWLVESQVQKLVVVVANANTDDILERWMFDVYADPPSAHGVNSAAELKPAKVVMSEIQAIMRQITASVSFLPLLNDPCTFDLLVYTDRDVHVPQTWEESDPRLVENSVEVRLRSFTTKVHKVDAMVAYK 206          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|1126203824|ref|XP_019635367.1| (PREDICTED: mitotic spindle assembly checkpoint protein MAD2A-like [Branchiostoma belcheri])

HSP 1 Score: 229.565 bits (584), Expect = 3.886e-73
Identity = 114/198 (57.58%), Postives = 140/198 (70.71%), Query Frame = 0
Query:   18 AADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            AA NS ITL+GS +IV EFF + I  ILYQRGIYPPE F R  KYGL L V  +  L TYL NVL QL+ WL    V+KLVVVVT +++Q VLERW F ++  +  A + +    +K  KEI  EI A+IRQIT SV+F+PLL E CSFDLL+YTDKD+ VP TWE+S P  I ++EEVRLRS +T +HKVD MV Y+
Sbjct:    7 AAKNS-ITLKGSAEIVAEFFSYGINSILYQRGIYPPETFSRVQKYGLTLLVTTDNELKTYLNNVLMQLKDWLLDKTVEKLVVVVTSIDTQEVLERWQFDIECDKTMAEDSK--PREKPLKEINDEIKAVIRQITASVTFLPLLEENCSFDLLIYTDKDLEVPETWEESGPHFIAKSEEVRLRSFSTSIHKVDAMVCYK 201          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|1160570633|ref|XP_020435224.1| (DNA-binding HORMA domain-containing protein [Polysphondylium pallidum PN500] >gi|281208932|gb|EFA83107.1| DNA-binding HORMA domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 229.565 bits (584), Expect = 4.103e-73
Identity = 111/198 (56.06%), Postives = 143/198 (72.22%), Query Frame = 0
Query:   19 ADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYRM 216
            A  + ITL+GSTDIV EFF ++I  IL+QRG+YPPE F R  KYGL++ V  ++GL  YL NVL+QL QWL + +VQKLV+V+T + ++ VLERWVF V   Q    N       K +KEI +EI AIIRQIT SV+F+PLL   C+FDLLVYT+KD+ VP  WE+SDP+ I  ++ VRLRS  T +HKVDTMVAY++
Sbjct:    6 ATKNNITLKGSTDIVTEFFSYSINSILFQRGVYPPETFSRVAKYGLSILVTTDQGLKDYLDNVLKQLSQWLMTGDVQKLVLVITDVVTKDVLERWVFDV---QTDLPNQSEAPRVKPEKEIMNEIQAIIRQITASVTFLPLLPSACTFDLLVYTNKDISVPQKWEESDPQYITNSQHVRLRSFTTTIHKVDTMVAYKL 200          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|675163181|ref|XP_008890475.1| (hypothetical protein PPTG_00751 [Phytophthora parasitica INRA-310] >gi|566033728|gb|ETI56639.1| hypothetical protein F443_00886 [Phytophthora parasitica P1569] >gi|567971463|gb|ETK96471.1| hypothetical protein L915_00827 [Phytophthora parasitica] >gi|567999793|gb|ETL49827.1| hypothetical protein L916_00817 [Phytophthora parasitica] >gi|568028962|gb|ETM02896.1| hypothetical protein L917_00785 [Phytophthora parasitica] >gi|568109803|gb|ETN24410.1| hypothetical protein PPTG_00751 [Phytophthora parasitica INRA-310] >gi|570337437|gb|ETO85385.1| hypothetical protein F444_00894 [Phytophthora parasitica P1976] >gi|570961498|gb|ETP26477.1| hypothetical protein F441_00862 [Phytophthora parasitica CJ01A1] >gi|570998219|gb|ETP54474.1| hypothetical protein F442_00840 [Phytophthora parasitica P10297])

HSP 1 Score: 229.565 bits (584), Expect = 4.383e-73
Identity = 112/194 (57.73%), Postives = 139/194 (71.65%), Query Frame = 0
Query:   22 SVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            +VITL+GST+IV EFF ++I  ILYQRGIYP E F++  KYGL + V  ++ L  +    L QL  WL    VQKLV+V+TG+E+Q VLERW F V  A           A KS+KEI +EI AIIRQIT SVSF+P+L E+C+FDLLVYTDK+  VPA WE+SDPR I+ + EVRLRS +TKVHKVD MVAY+
Sbjct:    9 NVITLKGSTEIVTEFFSYSINTILYQRGIYPAESFKQVQKYGLNMLVTDDDKLNDFFTKFLHQLSNWLLKGEVQKLVLVITGIETQEVLERWAFEVH-ADNGTGESGNAPASKSKKEIMAEIQAIIRQITASVSFLPILEEQCAFDLLVYTDKNSEVPALWEESDPRYIKDSAEVRLRSFSTKVHKVDAMVAYK 201          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|568059550|gb|ETM56125.1| (hypothetical protein L914_00815 [Phytophthora parasitica])

HSP 1 Score: 229.18 bits (583), Expect = 6.785e-73
Identity = 112/194 (57.73%), Postives = 139/194 (71.65%), Query Frame = 0
Query:   22 SVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            +VITL+GST+IV EFF ++I  ILYQRGIYP E F++  KYGL + V  ++ L  +    L QL  WL    VQKLV+V+TG+E+Q VLERW F V  A           A KS+KEI +EI AIIRQIT SVSF+P+L E+C+FDLLVYTDK+  VPA WE+SDPR I+ + EVRLRS +TKVHKVD MVAY+
Sbjct:    9 NVITLKGSTEIVTEFFSYSINTILYQRGIYPAESFKQVQKYGLNMLVTDDDKLNDFFTKFLHQLSNWLLKGEVQKLVLVITGIETQEVLERWAFEVH-ADNGTGESGNAPASKSKKEIMAEIQAIIRQITASVSFLPILEEQCAFDLLVYTDKNSEVPALWEESDPRYIRDSAEVRLRSFSTKVHKVDAMVAYK 201          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|301120988|ref|XP_002908221.1| (mitotic spindle checkpoint component mad2 [Phytophthora infestans T30-4] >gi|262103252|gb|EEY61304.1| mitotic spindle checkpoint component mad2 [Phytophthora infestans T30-4])

HSP 1 Score: 228.794 bits (582), Expect = 9.212e-73
Identity = 115/200 (57.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query:   16 APAADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSVDTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            A  A+N +ITL+GST+IV EFF  +I  ILYQRGIYP E F++  KYGL + V  ++ L  +    L QL  WL    VQKLV+V+TG+E+Q VLERWVF V  A           A K +KEI +EI AIIRQIT SVSF+P+L ERC+FDLLVYTDK+  VPA WE+SDPR I+ + EVRLRS +TKVHKVD MVAY+
Sbjct:    4 AQVAEN-IITLKGSTEIVTEFFSCSINTILYQRGIYPAESFKQIQKYGLNMLVTDDDKLSDFFTKFLHQLSNWLLKGEVQKLVLVITGIETQEVLERWVFEVH-ADNGTGESDSTPASKPKKEIMAEIQAIIRQITASVSFLPILEERCAFDLLVYTDKNSEVPALWEESDPRYIKDSAEVRLRSFSTKVHKVDAMVAYK 201          
BLAST of EWM29857.1 vs. NCBI_GenBank
Match: gi|260802726|ref|XP_002596243.1| (hypothetical protein BRAFLDRAFT_260671 [Branchiostoma floridae] >gi|229281497|gb|EEN52255.1| hypothetical protein BRAFLDRAFT_260671 [Branchiostoma floridae])

HSP 1 Score: 227.639 bits (579), Expect = 2.112e-72
Identity = 115/200 (57.50%), Postives = 139/200 (69.50%), Query Frame = 0
Query:   18 AADNSVITLRGSTDIVVEFFEHAITCILYQRGIYPPEDFERKTKYGLALHVAREEGLVTYLKNVLEQLRQWLTSSNVQKLVVVVTGMESQAVLERWVFSV--DTAQEAATNPQGYQAQKSQKEITSEIAAIIRQITCSVSFMPLLAERCSFDLLVYTDKDVLVPATWEDSDPRLIQQAEEVRLRSVNTKVHKVDTMVAYR 215
            AA NS ITL+GS +IV EFF + I  ILYQRGIYPPE F R  KYGL L V  +  L TYL NVL QL+ WL    V+KLVVVVT +++Q VLERW F +  D      + P+    +K  KEI  EI A+IRQIT SV+F+PLL E CSFDLL+YTDKD+ VP TWE+S P  I ++EEVRLRS +T +HKVD MV Y+
Sbjct:    7 AAKNS-ITLKGSAEIVSEFFSYGINSILYQRGIYPPETFSRVQKYGLTLLVTTDNELKTYLNNVLMQLKDWLLDKTVEKLVVVVTSIDTQEVLERWQFDIECDKTMTEDSKPR----EKPLKEINDEIKAVIRQITASVTFLPLLEENCSFDLLIYTDKDLQVPETWEESGPHFIAKSEEVRLRSFSTSIHKVDAMVCYK 201          
The following BLAST results are available for this feature:
BLAST of EWM29857.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112438|gb|EWM29857.1|4.376e-164100.00dna-binding horma domain-containing protein [Nanno... [more]
gi|551669998|ref|XP_005837757.1|9.461e-7958.00hypothetical protein GUITHDRAFT_151073 [Guillardia... [more]
gi|303288706|ref|XP_003063641.1|2.105e-7458.00predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|698776308|ref|XP_009821198.1|1.677e-7359.90hypothetical protein H257_00293 [Aphanomyces astac... [more]
gi|1126203824|ref|XP_019635367.1|3.886e-7357.58PREDICTED: mitotic spindle assembly checkpoint pro... [more]
gi|1160570633|ref|XP_020435224.1|4.103e-7356.06DNA-binding HORMA domain-containing protein [Polys... [more]
gi|675163181|ref|XP_008890475.1|4.383e-7357.73hypothetical protein PPTG_00751 [Phytophthora para... [more]
gi|568059550|gb|ETM56125.1|6.785e-7357.73hypothetical protein L914_00815 [Phytophthora para... [more]
gi|301120988|ref|XP_002908221.1|9.212e-7357.50mitotic spindle checkpoint component mad2 [Phytoph... [more]
gi|260802726|ref|XP_002596243.1|2.112e-7257.50hypothetical protein BRAFLDRAFT_260671 [Branchiost... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna864rna864Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications