rna858, rna858 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna858
Unique Name	rna858
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1667
Alignment location	CM002456.1:585420..587116 -

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Properties


Property Name	Value
Product	Protein of unknown function DUF1517
Orig transcript id	gnl\|cribi\|Naga_100017g48.340.mrna
Orig protein id	gnl\|cribi\|Naga_100017g48.340
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:585420..587116 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g48	gene821	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna858	rna858-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29842.1	cds858	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:585420..587116-
coding sequence from alignment at CM002456.1:585420..587116-

mRNA sequence

>rna858 ID=rna858|Name=rna858|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp
CGAGGAACCTGCGATCAACACGCAGGGCGGGGCGACTGCACAGCCGCGTG
CCCAGGCTGGTGATTTGGTTGGTGCATTGTGCGCGAGAAGGCATCGGAGG
CCTGTGCGAGGGTCTTCCAGGAATTGTGTTCCCTGTCTTGAATATAATCT
ATGCCCCAGGGCTACCTGCGACAGGATACGATTCTTGGCGCGCAGACTGC
CAGAGTAGCAGTGCTCACTCCTTTCGGAGAACAAGCACTATTAATTTCCA
CGCTCATTCGAATGTTATGACTGCGTTACAAACATTATTTTTTATTATTC
ACTTCATTGACACCAAAGGTTGTCCTCGCCTTCATGTGTCCTTCAAGCGA
GCGGAAAGGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCC
GTACCTCTAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCG
TGTTGCAGCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACA
ACTATCCAGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCA
TGGATGACGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAAT
CTACCAGCAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGC
ACAAGCACTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAG
ATATTCCCCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTC
ACGCCTTCGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGC
CATTCCGAAGGACGGAGATCTTTTAAGCAATGACCGCGTTTTGGTGCATG
GACGTCCCATTCGCAAGACGGACGTGGCAGTCTTCGGGGGCTTTATGGGG
GTTGCGATCGCGCAAGCAGAGATGGCACGGCGGAGGGAGAGGTTAGGTCA
AGGGGGGGTAGAGGGGGACGTATATTTGGTCACATACCAAATAGCCTTGT
ACGATCGGGACCAACGCGGCCTTATGCAGGCGTTGCAGCGGCTGGCCGAG
CGTGCGGAGACGACGACGAGCGCAGGGCTGGCGTCCTTGGCCTCTAGCGT
ATCTCTGGAGCTCCTCCGATCCTACGAAGGCTGGGTAGCGGCGCAGGCCA
CGAGCGGGAGGTTCAAAGATATGGCGGCCGCAGAGCGAGCCTTCAATGAG
GCTTCCATGAGGGAGCGGAAGAAATGGGCCTTCGAGAACACGCCTGAGGA
CAGGGCTGCGATGGTCTTGGCGGCGAGGCGGAAGGGCAACGAGAGCAAGG
AGAGTTCGGCAGCTTCTTCTATGGCAGGAAAACAATTACTTGTCTTGACG
TTGATGGTGGCATGCCGAAATATAGGTGGAAAGCATATTCTACCGCGTAG
GTCGGGATCAGCCGAGGCTCTGGAAGGGTCGTTGGAGCGCTTCGCGGCGG
CTCTTCTGGAAAAGAATGGGAAGAACGTACTTGCGGTGGACGTAAGTTGG
ACTCCTGATGGTGATGGGGAGATATTAAGTCGCTTGGATGTCACGCGGAA
ATGGCCAGAGCTGATAGATTTGTAGATTTTCCTTATGTAGAGGGCCCTAA
CAAGACTCGCAATCAGTCACTGAATTTAGGCAATGAAACAACATGGACGC
ATTAACAAAGGCAGTAC

protein sequence of rna858

>rna858-protein ID=rna858-protein|Name=rna858|organism=Nannochloropsis gaditana|type=polypeptide|length=417bp
MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGL
RVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLP
FLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFS
FEFGRAIPKIRIQDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAE
MARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTS
AGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERK
KWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRN
IGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGE
ILSRLDVTRKWPELIDL

mRNA from alignment at CM002456.1:585420..587116-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna858 ID=rna858|Name=rna858|organism=Nannochloropsis gaditana|type=mRNA|length=1697bp|location=Sequence derived from alignment at CM002456.1:585420..587116- (Nannochloropsis gaditana)
GAGGGTCTTCCAGGAATTGTGTTCCCTGTCTTGAATATAATCTATGCCCC
AGGGCTACCTGCGACAGGATACGATTCTTGGCGCGCAGACTGCCAGAGTA
GCAGTGCTCACTCCTTTCGGAGAACAAGCACTATTAATTTCCACGCTCAT
TCGAATGTTATGACTGCGTTACAAACATTATTTTTTATTATTCACTTCAT
TGACACCAAAGGTTGTCCTCGCCTTCATGTGTCCTTCAAGCGAGCGGAAA
GGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCCGTACCTC
TAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCGTGTTGCA
GCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACAACTATCC
AGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCATGGATGA
CGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAATCTACCAG
CAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGCACAAGCA
CTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAGATATTCC
CCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTCACGCCTT
CGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGCCATTCCG
AAGGTAAGGGTCATTTTTTGAAAGTTCACTCTAGAGTCGCATTCGGTCGC
GGCATAGCCGACTCCAGTGGATCCAGGCAGTCCTCGTCTCTCGTATTCTT
CTCACAAGCTCTCCTTTTTACATGCAAGATACGCATTCAGGACGGAGATC
TTTTAAGCAATGACCGCGTTTTGGTGCATGGACGTCCCATTCGCAAGACG
GACGTGGCAGTCTTCGGGGGCTTTATGGGGGTTGCGATCGCGCAAGCAGA
GATGGCACGGCGGAGGGAGAGGTTAGGTCAAGGGGGGGTAGAGGGGGACG
TATATTTGGTCACATACCAAATAGCCTTGTACGATCGGGACCAACGCGGC
CTTATGCAGGCGTTGCAGCGGCTGGCCGAGCGTGCGGAGACGACGACGAG
CGCAGGGCTGGCGTCCTTGGCCTCTAGCGTATCTCTGGAGCTCCTCCGAT
CCTACGAAGGCTGGGTAGCGGCGCAGGCCACGAGCGGGAGGTTCAAAGAT
ATGGCGGCCGCAGAGCGAGCCTTCAATGAGGCTTCCATGAGGGAGCGGAA
GAAATGGGCCTTCGAGAACACGCCTGAGGACAGGGCTGCGATGGTCTTGG
CGGCGAGGCGGAAGGGCAACGAGAGCAAGGAGAGTTCGGCAGCTTCTTCT
ATGGCAGGAAAACAATTACTTGTCTTGACGTTGATGGTGGCATGCCGAAA
TATAGGTGGAAAGCATATTCTACCGCGTAGGTCGGGATCAGCCGAGGCTC
TGGAAGGGTCGTTGGAGCGCTTCGCGGCGGCTCTTCTGGAAAAGAATGGG
AAGAACGTACTTGCGGTGGACGTAAGTTGGACTCCTGATGGTGATGGGGA
GATATTAAGTCGCTTGGATGTCACGCGGAAATGGCCAGAGCTGATAGATT
TGTAGATTTTCCTTATGTAGAGGGCCCTAACAAGACTCGCAATCAGTCAC
TGAATTTAGGCAATGAAACAACATGGACGCATTAACAAAGGCAGTAC

Coding sequence (CDS) from alignment at CM002456.1:585420..587116-

>rna858 ID=rna858|Name=rna858|organism=Nannochloropsis gaditana|type=CDS|length=2508bp|location=Sequence derived from alignment at CM002456.1:585420..587116- (Nannochloropsis gaditana)
ATACGCATTCAGGACGGAGATCTTTTAAGCAATGACCGCGTTTTGGTGCA
TGGACGTCCCATTCGCAAGACGGACGTGGCAGTCTTCGGGGGCTTTATGG
GGGTTGCGATCGCGCAAGCAGAGATGGCACGGCGGAGGGAGAGGTTAGGT
CAAGGGGGGGTAGAGGGGGACGTATATTTGGTCACATACCAAATAGCCTT
GTACGATCGGGACCAACGCGGCCTTATGCAGGCGTTGCAGCGGCTGGCCG
AGCGTGCGGAGACGACGACGAGCGCAGGGCTGGCGTCCTTGGCCTCTAGC
GTATCTCTGGAGCTCCTCCGATCCTACGAAGGCTGGGTAGCGGCGCAGGC
CACGAGCGGGAGGTTCAAAGATATGGCGGCCGCAGAGCGAGCCTTCAATG
AGGCTTCCATGAGGGAGCGGAAGAAATGGGCCTTCGAGAACACGCCTGAG
GACAGGGCTGCGATGGTCTTGGCGGCGAGGCGGAAGGGCAACGAGAGCAA
GGAGAGTTCGGCAGCTTCTTCTATGGCAGGAAAACAATTACTTGTCTTGA
CGTTGATGGTGGCATGCCGAAATATAGGTGGAAAGCATATTCTACCGCGT
AGGTCGGGATCAGCCGAGGCTCTGGAAGGGTCGTTGGAGCGCTTCGCGGC
GGCTCTTCTGGAAAAGAATGGGAAGAACGTACTTGCGGTGGACGTAAGTT
GGACTCCTGATGGTGATGGGGAGATATTAAGTCGCTTGGATGTCACGCGG
AAATGGCCAGAGCTGATAGATTTGTAGATGTGTCCTTCAAGCGAGCGGAA
AGGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCCGTACCT
CTAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCGTGTTGC
AGCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACAACTATC
CAGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCATGGATG
ACGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAATCTACCA
GCAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGCACAAGC
ACTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAGATATTC
CCCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTCACGCCT
TCGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGCCATTCC
GAAGATACGCATTCAGGACGGAGATCTTTTAAGCAATGACCGCGTTTTGG
TGCATGGACGTCCCATTCGCAAGACGGACGTGGCAGTCTTCGGGGGCTTT
ATGGGGGTTGCGATCGCGCAAGCAGAGATGGCACGGCGGAGGGAGAGGTT
AGGTCAAGGGGGGGTAGAGGGGGACGTATATTTGGTCACATACCAAATAG
CCTTGTACGATCGGGACCAACGCGGCCTTATGCAGGCGTTGCAGCGGCTG
GCCGAGCGTGCGGAGACGACGACGAGCGCAGGGCTGGCGTCCTTGGCCTC
TAGCGTATCTCTGGAGCTCCTCCGATCCTACGAAGGCTGGGTAGCGGCGC
AGGCCACGAGCGGGAGGTTCAAAGATATGGCGGCCGCAGAGCGAGCCTTC
AATGAGGCTTCCATGAGGGAGCGGAAGAAATGGGCCTTCGAGAACACGCC
TGAGGACAGGGCTGCGATGGTCTTGGCGGCGAGGCGGAAGGGCAACGAGA
GCAAGGAGAGTTCGGCAGCTTCTTCTATGGCAGGAAAACAATTACTTGTC
TTGACGTTGATGGTGGCATGCCGAAATATAGGTGGAAAGCATATTCTACC
GCGTAGGTCGGGATCAGCCGAGGCTCTGGAAGGGTCGTTGGAGCGCTTCG
CGGCGGCTCTTCTGGAAAAGAATGGGAAGAACGTACTTGCGGTGGACGTA
AGTTGGACTCCTGATGGTGATGGGGAGATATTAAGTCGCTTGGATGTCAC
GCGGAAATGGCCAGAGCTGATAGATTTGTAGATGTGTCCTTCAAGCGAGC
GGAAAGGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCCGT
ACCTCTAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCGTG
TTGCAGCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACAAC
TATCCAGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCATG
GATGACGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAATCT
ACCAGCAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGCAC
AAGCACTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAGAT
ATTCCCCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTCAC
GCCTTCGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGCCA
TTCCGAAG

Synonyms

Publications