EWM29842.1, cds858 (CDS) Nannochloropsis gaditana

Overview
NameEWM29842.1
Unique Namecds858
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:586414..586890 -
Alignment locationCM002456.1:585512..586288 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29842.1
ProductProtein of unknown function DUF1517
Orig transcript idgnl|cribi|Naga_100017g48.340.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:586414..586890 -
CM002456.1supercontigCM002456.1:585512..586288 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010903DUF1517
Homology
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|585112423|gb|EWM29842.1| (Protein of unknown function DUF1517 [Nannochloropsis gaditana])

HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0
Query:    1 MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPKIRIQDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPKIRIQDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL
Sbjct:    1 MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPKIRIQDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|585112422|gb|EWM29841.1| (Protein of unknown function DUF1517 [Nannochloropsis gaditana])

HSP 1 Score: 831.247 bits (2146), Expect = 0.000e+0
Identity = 413/417 (99.04%), Postives = 413/417 (99.04%), Query Frame = 0
Query:    1 MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPKIRIQDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPK    DGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL
Sbjct:    1 MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGLRVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLPFLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFSFEFGRAIPK----DGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 413          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|553195590|ref|XP_005856177.1| (membrane protein [Nannochloropsis gaditana CCMP526] >gi|422292880|gb|EKU20181.1| membrane protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 491.886 bits (1265), Expect = 6.507e-173
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 0
Query:  174 LVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            +VHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL
Sbjct:    1 MVHGRPIRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 244          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|656720236|gb|KEF42941.1| (hypothetical protein ER33_03485 [Cyanobium sp. CACIAM 14])

HSP 1 Score: 87.8113 bits (216), Expect = 1.177e-15
Identity = 69/204 (33.82%), Postives = 102/204 (50.00%), Query Frame = 0
Query:  214 EGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            +G V +   Q+ L     R L   L+RLA  A+T+TS+GL  +    SL LLR  + WV A    G+     +AE  FN  SM+ER K   E T        +A RR    +  +  AS  A    +V+TL+VA RN     +  + +G+AE L  SL++  A        ++LA++V W P+G GE+LS   +   +P+L  L
Sbjct:  129 DGPVSIAQIQVGLL-ASARDLQDDLRRLAASADTSTSSGLQRVLQETSLSLLRHPDLWVYANGEVGQVP-FTSAESTFNRLSMQERSKLERELTAN------VAGRRFSAPAAVAPGASD-AASDFIVVTLLVASRN----RLAIKGAGTAEDLRESLQKLGAV----GADDLLALEVIWQPEGAGEVLSTEQLITAYPDLQHL 315          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|949108659|gb|KRO93606.1| (hypothetical protein ABR96_08565 [cyanobacterium BACL30 MAG-120619-bin27])

HSP 1 Score: 85.5001 bits (210), Expect = 7.082e-15
Identity = 69/214 (32.24%), Postives = 109/214 (50.93%), Query Frame = 0
Query:  204 RRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            R + +G G  +G V +   Q+ L     R L   L+RLA  A+T+ +AGL +L    +L LLR  + WV A +  G+    A+AE  FN  SM ER K   E T        +  +R  ++S   +A  S A    + +TL+VA R+     +  + SGSA+ +  SL++  A        ++LA++V W P+G GE+LS  ++   +P+L  L
Sbjct:  128 RSDLVGGGRPDGPVTISQLQVGLL-ASARQLQTDLRRLAGSADTSHAAGLQALLQETTLALLRHPDLWVYANSEVGQVP-FASAESTFNRLSMTERSKLQREVTTN------VGGKRFSDDSV--AAGDSDASSDFIAVTLLVASRS----RLALKGSGSADQVRDSLQQLGAV----GAADLLAIEVIWQPEGAGEVLSTEELLTAYPQLQHL 323          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|1200347588|gb|OUU67506.1| (hypothetical protein CBC26_06095 [Synechococcus sp. TMED66])

HSP 1 Score: 85.5001 bits (210), Expect = 8.279e-15
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 0
Query:  215 GDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            G V L+  QI L     + L   L++LA  A+T+TS+GL  +    +L LLR  E WV A   SG      A+E  FN  SM ER K   E T        +   R GN ++ SS+  + A  + +V+T++VA R    + +  +++ S EAL  +L    +     +  +++A++V W PDG G++LS  ++   +P L  L
Sbjct:  139 GPVSLLQMQIGLL-ASAKSLQTDLRQLAASADTSTSSGLQRVLQETTLALLRQPELWVYANVESGSVP-FNASESTFNRLSMTERSKLRAEITTN------VGGVRNGNTAELSSSGDADATNEFIVVTVLVASR----QSVKLKQADSGEALRETLRILGS----TSSSDLMALEVIWQPDGSGDVLSADELVMAYPNLQHL 325          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|351675446|gb|EHA58607.1| (hypothetical protein Syn8016DRAFT_2923 [Synechococcus sp. WH 8016])

HSP 1 Score: 83.5741 bits (205), Expect = 2.412e-14
Identity = 63/203 (31.03%), Postives = 102/203 (50.25%), Query Frame = 0
Query:  215 GDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            G V ++  QI L     + L   L++LA  A+T+TS+GL  +    +L LLR  E WV A   SG      A+E  FN  SM ER K   E T        +   R GN ++ SS+  + A  + +V+T++VA R    + +  +++ S E L  +L    +     +  +++A++V W PDG G++LS  ++   +P L  L
Sbjct:  114 GPVSMLQMQIGLL-ASAKALQTDLRQLAASADTSTSSGLQRVLQETTLALLRQPELWVYANVESGSVP-FNASESTFNRLSMTERSKLRAEITTN------VGGVRNGNAAELSSSGDADATNEFIVVTVLVASR----QSVKLKQANSGEDLRETLRILGS----TSSSDLMALEVIWQPDGSGDVLSADELVMAYPNLQHL 300          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|1137233961|gb|OMO96457.1| (hypothetical protein COLO4_15279 [Corchorus olitorius])

HSP 1 Score: 84.3445 bits (207), Expect = 3.808e-14
Identity = 60/183 (32.79%), Postives = 99/183 (54.10%), Query Frame = 0
Query:  232 RGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPEL 414
            R L + L R+AE A+T+TS GL+ + +  ++ LLR  E  ++A ++      M   E+ FN+ S+ ER K+      E+    V   RRK   S++ S  S+    + LV+T++VA     G+H LP  +GS + L+ +L++ A+    K     LAV+V WTP  + + LS  ++   +PEL
Sbjct:  238 RSLQRELNRIAEDADTSTSKGLSYVLTETAVALLRHPEYCISAYSSVNVKYSMDGGEKHFNQLSIEERAKF-----DEETLVNVDNVRRKNKASQKPSGFSN----EYLVVTILVAAE---GEHKLPPINGSKD-LKEALQKLASITTSK----TLAVEVLWTPQDENDTLSEKELLEDYPEL 403          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|740172171|ref|WP_038015021.1| (DUF1517 domain-containing protein [Synechococcus sp. WH 8016])

HSP 1 Score: 82.8037 bits (203), Expect = 5.006e-14
Identity = 63/203 (31.03%), Postives = 102/203 (50.25%), Query Frame = 0
Query:  215 GDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPELIDL 417
            G V ++  QI L     + L   L++LA  A+T+TS+GL  +    +L LLR  E WV A   SG      A+E  FN  SM ER K   E T        +   R GN ++ SS+  + A  + +V+T++VA R    + +  +++ S E L  +L    +     +  +++A++V W PDG G++LS  ++   +P L  L
Sbjct:  135 GPVSMLQMQIGLL-ASAKALQTDLRQLAASADTSTSSGLQRVLQETTLALLRQPELWVYANVESGSVP-FNASESTFNRLSMTERSKLRAEITTN------VGGVRNGNAAELSSSGDADATNEFIVVTVLVASR----QSVKLKQANSGEDLRETLRILGST----SSSDLMALEVIWQPDGSGDVLSADELVMAYPNLQHL 321          
BLAST of EWM29842.1 vs. NCBI_GenBank
Match: gi|1137188191|gb|OMO62272.1| (hypothetical protein CCACVL1_22923 [Corchorus capsularis])

HSP 1 Score: 83.5741 bits (205), Expect = 5.628e-14
Identity = 72/235 (30.64%), Postives = 117/235 (49.79%), Query Frame = 0
Query:  180 IRKTDVAVFGGFMGVAIAQAEMARRRERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLASLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAFENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGKHILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSRLDVTRKWPEL 414
            I K  + VFGG +G+    A +      L +  V      +  Q+ L     R L + L R+AE A+T+TS GL+ + +  ++ LLR  E  ++A ++        A E+ FN+ S+ ER K+      E+    V   RRKG  S++ S  S+    + LV+T++VA     G H LP  +GS + L+ +L++ A+    K     L V+V WTP  + + LS  ++   +PEL
Sbjct:  165 IGKFFLVVFGGLLGLFFV-ATLVDMLSSLQRTSV------IKLQVGLSGM-ARSLQRELNRIAEVADTSTSKGLSYVLTETAVALLRHPEYCISAYSSVDVKYSTDAGEKHFNKLSIEERAKF-----DEETLVNVDNLRRKGKASQKPSGFSN----EYLVVTILVAAE---GVHKLPPINGSKD-LKEALQKLASITTSK----TLGVEVLWTPQVENDTLSEKELLEDYPEL 374          
The following BLAST results are available for this feature:
BLAST of EWM29842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112423|gb|EWM29842.1|0.000e+0100.00Protein of unknown function DUF1517 [Nannochlorops... [more]
gi|585112422|gb|EWM29841.1|0.000e+099.04Protein of unknown function DUF1517 [Nannochlorops... [more]
gi|553195590|ref|XP_005856177.1|6.507e-17399.59membrane protein [Nannochloropsis gaditana CCMP526... [more]
gi|656720236|gb|KEF42941.1|1.177e-1533.82hypothetical protein ER33_03485 [Cyanobium sp. CAC... [more]
gi|949108659|gb|KRO93606.1|7.082e-1532.24hypothetical protein ABR96_08565 [cyanobacterium B... [more]
gi|1200347588|gb|OUU67506.1|8.279e-1532.02hypothetical protein CBC26_06095 [Synechococcus sp... [more]
gi|351675446|gb|EHA58607.1|2.412e-1431.03hypothetical protein Syn8016DRAFT_2923 [Synechococ... [more]
gi|1137233961|gb|OMO96457.1|3.808e-1432.79hypothetical protein COLO4_15279 [Corchorus olitor... [more]
gi|740172171|ref|WP_038015021.1|5.006e-1431.03DUF1517 domain-containing protein [Synechococcus s... [more]
gi|1137188191|gb|OMO62272.1|5.628e-1430.64hypothetical protein CCACVL1_22923 [Corchorus caps... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna858rna858Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications