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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF1517 |
| Orig transcript id | gnl|cribi|Naga_100017g48.339.mrna |
| Orig protein id | gnl|cribi|Naga_100017g48.339 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:585420..587223 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna857 ID=rna857|Name=rna857|organism=Nannochloropsis gaditana|type=mRNA|length=3246bp
CACACCTGTGCACCCGCACGATCGAGTTATTCTCATAAGGACGTAACTCA
TTGAATGAAAGCTATGTAATACGCGCTTTACCCGATGAGGCGTTTCTTCC
CTTGTCTTGACATCAAATTAGAAAGTTGCATCATCGCGTAAGCCCATCGT
CTGCTCACGATGTCGTTCATCACTACACCTCATGGCCACACAGAGACGTC
GACGCTTCCAGTCGTGGGTAACATGTTTTTGAGAATACGGACGGTTCTCG
CCTATATTCGCGTCTGGTACTTTTCGCAGTCGTCCTGATCCGGACGCCAC
TTGGAAAGGAGGGCCAATTGATTCACCCAGGGCTCCTCGTGCATCCCAGA
GCGCGGTTCTTGGGAACTAATAATCAAAGCATTGGAGATCATGGATGAGG
AGCTTAATGTTCTTTCGCCTTTCTTAGTGAAGGCAGAGGTTTTGCTCGTC
CTTGTGGTGGTCCTCGTTGCATCAGTGGTGTGGTTATTTTGGGAAATTGT
CAGCTTCATGATGGACCGTGGGAAGGAGGAAACAAATCCCGACTGGTGGG
AGGTCCTCCGCAATTGTCAACACCGGCGGCTTATAATACCTCCATACTGC
GTGCAAGAGGTACCGGAGCTGGGGACGTTCTCGCGGCTGACCACGGCCAC
CACGAATGCGATGAAGAACATGTCCGGGGTGATCCAACGGACAAGTCACC
TGATCTCGGGTGGCAGCGGCAAATCTGCGGCAGCGATCAAAAAGGGCGCG
CGGCAAGATTTACCTAGTACCCAACAGGAAGGCGATGAGAATATGAAAGG
ATATACTGTGGACGGTAACGCGCGTGGGGTCAAGCTGCGGCGGCGTGGCT
CGAAACAGAGCATTGTCGGATTGAGCAATCACGGCACAAGTGCTGGAGGT
AAACCAGCTTTGCAGCCGACTGCGAACCCGACGCCACTTACTCTAAGTGA
AAATGGGGCCAATCCCGATGCCAGCGCGGCCAGTGACGCTCGACCCAAAC
CGCATCGCTTGGATTTGAACGGCGAGGAGGGCAACATGGTTCCATGTAAC
GGCAGCCTTTCCAGCCGTGCCGGCGACGGGAAGAGGGTGGTGGGCATGTC
AGGCTTGGCGAGTACCAGCGCCGCGGCAGGGTCGGACGCATCCTCCGCAA
ATGTCAAATCTATGGAGATTTCCCCAGCCGACACCCCCTGTCGGGGTCGA
ATCCGCTTTCTGCCACACCAGCGGGAGCGCCAGCAAATTGAAAATCACGA
AAAGTCACACGAAGGTAAACCGACGCGAAGCGGTCTCCCCCTTCGAGCGC
TTGACTCTCAGCCACCTCTCACGCCGTACGCACTGCCTGACGCCGAGGGG
GTCTTGGCGTCATCCGCCCAGTCCTCCCGACACGCCCCGGACGCGATCGC
CGCAACGCCCCGTCTTTCTTCGAGCCACGCGGCCAATGGAGAGCCGATCA
CTACACCCGCCCAACCCGTCCGCCTGCCGAGCATGGAGCACGCGCACAGC
GGGACCGGCGTCGCCTTGTCGGGAGGGAGCTCCGGCGTTGCCGGCAGAGG
CTTCATCTTTTCCCCCTTACCCGAAGATTGCACCCCGCTATTGGCCTTTG
TCAATAGCCGCTCAGGAGTCAGTCAAGGTGCCTATCTAATCCACCAGCTC
CGCCGCCTGCTAAATCCCATCCAAGTCATCGATCTAGCCAACGAGGATCC
CGCCCGCGCTCTCCGGCTCTATCTTGAGCTGCCCCGGCTGCGCGTTCTTG
TGTGTGGGGGCGACGGGACTGCGAAATGGATCATGAATGTCCTGGAGGAC
CTGAATCCCGAGTGTTGGCCTCCGATCGCCATACTGCCTCTGGGCACTGG
CAACGACATGGCGCGGGTTTTGGGATGGGGCGGGGGCTACAACAACCAGA
GCATCGTCGAGTTTCTCGCACAGGTGCAGCGGGCGCACGTGGTGGTGGTG
GATAGATGGGAAATGAAGCTGACACCGGCCGGAAAAGGGTCAAGTCGCGC
CAAGACCGTGACGTTCAACAACTATTTCGGCATCGGGGTGGACGCGCAGG
CGGCGTTAAAATTTCACCATTTGCGAGAACAGAAACCTCAATTATTCTTT
TCAAGATTAGTCAACAAGCTTTGGTATGGGATGCTTGGAGCGCAAGACTT
GTTCCGACGAACGTGCGTCTCGCTACCTGAACGACTGAAAATTGTAGCAG
ACGGTAAAGAGCTTACCCTTCCGGCGCACGTTCAAGGTGTCATTTTTCTG
AACATTGAGTCGTACGGGGGCGGTGTCAAGCTTTGGAATGTAGAGGAAGA
TGACGAAAGTGCGGGCAACGGTCTTTTCGATGCTTCTTCCTCTTCCTGTT
CCTCAGAGGAGGGAGACAGGAGTGAGGACGAAAGCAGGCGTCAGCGGCGC
CGACGACGACGGCGGGAGAGGCAGAGACGACAGCAGTCGCAGGCGGAAGA
GGAAGCCCACCGTCAGAGAGAGCAGCAGGAGAAGCCGTCGTCAATGGCTT
TGACCTCGTCTTCGATGCAGGACGGCCTAATGGAGGTGGTGGCGATCAAT
GGAGTGGTGCACCTGGGGCAGCTCCAGGTCGGTTTGAGCAAAGCCGTGAA
GATCTGCCAGTGCCGGGAGGCGGTCATCACTACTACTCGGGACTTGCCCA
TGCAAGTTGATGGAGAGCCTTGGCCACAGGCGAAAAGTACCATAAAAATC
ACACGAAAGAAAGATCCAGCTTATCTCTTGAGGAGGACCATGGACAGCGG
GGGAGCTGTGGTCGGAGAAGTGGTGGAGTTGCTGGAGAGTGCGGTGAAGG
ACGGTGTGATAAGCTTGCCACAAAAGAAGAGCTTGCTGACGGAGCTGTCA
AGGCGGGTCGAGATGAAGCGTAAGGTGTTTGAACAGGAGCTGAGCCAAAA
TGATGGTGTTCCATCCTTTTCCAAAGGTTTCGATGTTTCCCGGCTGCGCC
TTGCCGCTGACTCCAACTCCAAGGATTGTGTGCTCATGTAGGGCACTTGA
AAGAGGTCGTGTGTAATCGCTGGGTGTTGAGGCTCAACTCGCACACATCT
TTGTGTCATCGGTTGTATCATAGTCTTCACCCATACTCGCTACCATGTAA
AGGATTTGGAATCAAGTTATTCGATTTCCCGATCTCATTCCATTTTTGGC
TGTGCATGATGACTTCCTTGCGAGCATTTGTAGAGTCTTTTAGCTCTCAT
TCAAAGGACATGTTCAAAGAAATCAGTACCATTGCTTTTCGAAAGA back to topprotein sequence of rna857 >rna857-protein ID=rna857-protein|Name=rna857|organism=Nannochloropsis gaditana|type=polypeptide|length=413bp
MCPSSERKGLSTMTVFRPCSRRRTSRARPIIVFVMTAAACCSTLQYTSGL
RVFTPQLSRIRGRRSDGTFTFCMDDENLPERRVIHPKANLPAVLGGLSLP
FLSQSAQALAAPGAGRIAGRATDIPPPPPPSNSRIERSVTPSSSSDSRFS
FEFGRAIPKDGDLLSNDRVLVHGRPIRKTDVAVFGGFMGVAIAQAEMARR
RERLGQGGVEGDVYLVTYQIALYDRDQRGLMQALQRLAERAETTTSAGLA
SLASSVSLELLRSYEGWVAAQATSGRFKDMAAAERAFNEASMRERKKWAF
ENTPEDRAAMVLAARRKGNESKESSAASSMAGKQLLVLTLMVACRNIGGK
HILPRRSGSAEALEGSLERFAAALLEKNGKNVLAVDVSWTPDGDGEILSR
LDVTRKWPELIDL back to topmRNA from alignment at CM002456.1:585420..587223- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna857 ID=rna857|Name=rna857|organism=Nannochloropsis gaditana|type=mRNA|length=1804bp|location=Sequence derived from alignment at CM002456.1:585420..587223- (Nannochloropsis gaditana)
CGAGGAACCTGCGATCAACACGCAGGGCGGGGCGACTGCACAGCCGCGTG
CCCAGGCTGGTGATTTGGTTGGTGCATTGTGCGCGAGAAGGCATCGGAGG
CCTGTGCGAGGGTCTTCCAGGAATTGTGTTCCCTGTCTTGAATATAATCT
ATGCCCCAGGGCTACCTGCGACAGGATACGATTCTTGGCGCGCAGACTGC
CAGAGTAGCAGTGCTCACTCCTTTCGGAGAACAAGCACTATTAATTTCCA
CGCTCATTCGAATGTTATGACTGCGTTACAAACATTATTTTTTATTATTC
ACTTCATTGACACCAAAGGTTGTCCTCGCCTTCATGTGTCCTTCAAGCGA
GCGGAAAGGGCTCTCCACCATGACGGTCTTCCGCCCATGTTCTAGGCGCC
GTACCTCTAGAGCTCGTCCTATCATCGTATTTGTCATGACAGCAGCAGCG
TGTTGCAGCACCCTGCAGTACACTTCGGGGCTCAGAGTATTTACCCCACA
ACTATCCAGAATACGTGGAAGACGGTCGGACGGCACTTTTACCTTCTGCA
TGGATGACGAGAACCTCCCAGAACGGCGTGTCATACATCCAAAGGCAAAT
CTACCAGCAGTACTCGGTGGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGC
ACAAGCACTGGCTGCTCCCGGAGCCGGGCGAATAGCGGGCCGTGCTACAG
ATATTCCCCCTCCGCCCCCCCCCTCCAACTCCCGCATCGAACGGAGCGTC
ACGCCTTCGTCGTCCTCAGACTCGCGCTTCTCTTTCGAGTTTGGTCGGGC
CATTCCGAAGGTAAGGGTCATTTTTTGAAAGTTCACTCTAGAGTCGCATT
CGGTCGCGGCATAGCCGACTCCAGTGGATCCAGGCAGTCCTCGTCTCTCG
TATTCTTCTCACAAGCTCTCCTTTTTACATGCAAGATACGCATTCAGGAC
GGAGATCTTTTAAGCAATGACCGCGTTTTGGTGCATGGACGTCCCATTCG
CAAGACGGACGTGGCAGTCTTCGGGGGCTTTATGGGGGTTGCGATCGCGC
AAGCAGAGATGGCACGGCGGAGGGAGAGGTTAGGTCAAGGGGGGGTAGAG
GGGGACGTATATTTGGTCACATACCAAATAGCCTTGTACGATCGGGACCA
ACGCGGCCTTATGCAGGCGTTGCAGCGGCTGGCCGAGCGTGCGGAGACGA
CGACGAGCGCAGGGCTGGCGTCCTTGGCCTCTAGCGTATCTCTGGAGCTC
CTCCGATCCTACGAAGGCTGGGTAGCGGCGCAGGCCACGAGCGGGAGGTT
CAAAGATATGGCGGCCGCAGAGCGAGCCTTCAATGAGGCTTCCATGAGGG
AGCGGAAGAAATGGGCCTTCGAGAACACGCCTGAGGACAGGGCTGCGATG
GTCTTGGCGGCGAGGCGGAAGGGCAACGAGAGCAAGGAGAGTTCGGCAGC
TTCTTCTATGGCAGGAAAACAATTACTTGTCTTGACGTTGATGGTGGCAT
GCCGAAATATAGGTGGAAAGCATATTCTACCGCGTAGGTCGGGATCAGCC
GAGGCTCTGGAAGGGTCGTTGGAGCGCTTCGCGGCGGCTCTTCTGGAAAA
GAATGGGAAGAACGTACTTGCGGTGGACGTAAGTTGGACTCCTGATGGTG
ATGGGGAGATATTAAGTCGCTTGGATGTCACGCGGAAATGGCCAGAGCTG
ATAGATTTGTAGATTTTCCTTATGTAGAGGGCCCTAACAAGACTCGCAAT
CAGTCACTGAATTTAGGCAATGAAACAACATGGACGCATTAACAAAGGCA
GTAC back to topCoding sequence (CDS) from alignment at CM002456.1:585420..587223- >rna857 ID=rna857|Name=rna857|organism=Nannochloropsis gaditana|type=CDS|length=2484bp|location=Sequence derived from alignment at CM002456.1:585420..587223- (Nannochloropsis gaditana)
GACGGAGATCTTTTAAGCAATGACCGCGTTTTGGTGCATGGACGTCCCAT
TCGCAAGACGGACGTGGCAGTCTTCGGGGGCTTTATGGGGGTTGCGATCG
CGCAAGCAGAGATGGCACGGCGGAGGGAGAGGTTAGGTCAAGGGGGGGTA
GAGGGGGACGTATATTTGGTCACATACCAAATAGCCTTGTACGATCGGGA
CCAACGCGGCCTTATGCAGGCGTTGCAGCGGCTGGCCGAGCGTGCGGAGA
CGACGACGAGCGCAGGGCTGGCGTCCTTGGCCTCTAGCGTATCTCTGGAG
CTCCTCCGATCCTACGAAGGCTGGGTAGCGGCGCAGGCCACGAGCGGGAG
GTTCAAAGATATGGCGGCCGCAGAGCGAGCCTTCAATGAGGCTTCCATGA
GGGAGCGGAAGAAATGGGCCTTCGAGAACACGCCTGAGGACAGGGCTGCG
ATGGTCTTGGCGGCGAGGCGGAAGGGCAACGAGAGCAAGGAGAGTTCGGC
AGCTTCTTCTATGGCAGGAAAACAATTACTTGTCTTGACGTTGATGGTGG
CATGCCGAAATATAGGTGGAAAGCATATTCTACCGCGTAGGTCGGGATCA
GCCGAGGCTCTGGAAGGGTCGTTGGAGCGCTTCGCGGCGGCTCTTCTGGA
AAAGAATGGGAAGAACGTACTTGCGGTGGACGTAAGTTGGACTCCTGATG
GTGATGGGGAGATATTAAGTCGCTTGGATGTCACGCGGAAATGGCCAGAG
CTGATAGATTTGTAGATGTGTCCTTCAAGCGAGCGGAAAGGGCTCTCCAC
CATGACGGTCTTCCGCCCATGTTCTAGGCGCCGTACCTCTAGAGCTCGTC
CTATCATCGTATTTGTCATGACAGCAGCAGCGTGTTGCAGCACCCTGCAG
TACACTTCGGGGCTCAGAGTATTTACCCCACAACTATCCAGAATACGTGG
AAGACGGTCGGACGGCACTTTTACCTTCTGCATGGATGACGAGAACCTCC
CAGAACGGCGTGTCATACATCCAAAGGCAAATCTACCAGCAGTACTCGGT
GGCCTTTCTTTGCCTTTCCTGTCTCAGAGCGCACAAGCACTGGCTGCTCC
CGGAGCCGGGCGAATAGCGGGCCGTGCTACAGATATTCCCCCTCCGCCCC
CCCCCTCCAACTCCCGCATCGAACGGAGCGTCACGCCTTCGTCGTCCTCA
GACTCGCGCTTCTCTTTCGAGTTTGGTCGGGCCATTCCGAAGGACGGAGA
TCTTTTAAGCAATGACCGCGTTTTGGTGCATGGACGTCCCATTCGCAAGA
CGGACGTGGCAGTCTTCGGGGGCTTTATGGGGGTTGCGATCGCGCAAGCA
GAGATGGCACGGCGGAGGGAGAGGTTAGGTCAAGGGGGGGTAGAGGGGGA
CGTATATTTGGTCACATACCAAATAGCCTTGTACGATCGGGACCAACGCG
GCCTTATGCAGGCGTTGCAGCGGCTGGCCGAGCGTGCGGAGACGACGACG
AGCGCAGGGCTGGCGTCCTTGGCCTCTAGCGTATCTCTGGAGCTCCTCCG
ATCCTACGAAGGCTGGGTAGCGGCGCAGGCCACGAGCGGGAGGTTCAAAG
ATATGGCGGCCGCAGAGCGAGCCTTCAATGAGGCTTCCATGAGGGAGCGG
AAGAAATGGGCCTTCGAGAACACGCCTGAGGACAGGGCTGCGATGGTCTT
GGCGGCGAGGCGGAAGGGCAACGAGAGCAAGGAGAGTTCGGCAGCTTCTT
CTATGGCAGGAAAACAATTACTTGTCTTGACGTTGATGGTGGCATGCCGA
AATATAGGTGGAAAGCATATTCTACCGCGTAGGTCGGGATCAGCCGAGGC
TCTGGAAGGGTCGTTGGAGCGCTTCGCGGCGGCTCTTCTGGAAAAGAATG
GGAAGAACGTACTTGCGGTGGACGTAAGTTGGACTCCTGATGGTGATGGG
GAGATATTAAGTCGCTTGGATGTCACGCGGAAATGGCCAGAGCTGATAGA
TTTGTAGATGTGTCCTTCAAGCGAGCGGAAAGGGCTCTCCACCATGACGG
TCTTCCGCCCATGTTCTAGGCGCCGTACCTCTAGAGCTCGTCCTATCATC
GTATTTGTCATGACAGCAGCAGCGTGTTGCAGCACCCTGCAGTACACTTC
GGGGCTCAGAGTATTTACCCCACAACTATCCAGAATACGTGGAAGACGGT
CGGACGGCACTTTTACCTTCTGCATGGATGACGAGAACCTCCCAGAACGG
CGTGTCATACATCCAAAGGCAAATCTACCAGCAGTACTCGGTGGCCTTTC
TTTGCCTTTCCTGTCTCAGAGCGCACAAGCACTGGCTGCTCCCGGAGCCG
GGCGAATAGCGGGCCGTGCTACAGATATTCCCCCTCCGCCCCCCCCCTCC
AACTCCCGCATCGAACGGAGCGTCACGCCTTCGTCGTCCTCAGACTCGCG
CTTCTCTTTCGAGTTTGGTCGGGCCATTCCGAAG back to top
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