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Properties
| Property Name | Value |
|---|
| Product | gpn-loop gtpase 2 |
| Orig transcript id | gnl|cribi|Naga_100064g28.4114.mrna |
| Orig protein id | gnl|cribi|Naga_100064g28.4114 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037249.1 | supercontig | KK037249.1:211539..213923 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8540 ID=rna8540|Name=rna8540|organism=Nannochloropsis gaditana|type=mRNA|length=740bp
ATGTCTCCGTGCGTATACCATAGAAACAGGCAGTCTACCAAAATTAGTAT
GAAGCGGATGCTGGCACACGTGAGATATCCCGCCTGCACACATCGTATAT
CGTGTCCTTGCACGTCATTTTCCACGTCTTCTTCTTCACCAGCGCCCGGT
TCGGAGGACGCCTATCTTGATGAATGGATGCGCAAGCAAATTAAATCTTT
TGCCTTTTACGAGGAGGAGGGTTTGCAACGACGTTATTTTTACACTGTCG
ATTTGCAGGGGCGGTTATACTTGGAGGAAAGTCCCGTCAAGAATATGACA
TCTTGTTTGAAGGATGACAAGTTCCTCAATTTCTTTTTCCGGCAAATCCG
ACGGAACGACACGGGCCTTCATCCCTCCTACCCTTTCGTCTCTCCATGCG
GCAAAGAAATGAACTACCTTCTCCCCGCCGACATGCCCGTCGTTTTCCAC
GACCTGCTCCCTGCCCTGTCAGGCAACGAGAAGTCGGGAGACAGAGGAGA
TTGTTTGGTCTTCGGGGGGGGGTTGCAACAACGCTTTGACCCAAGCCGGG
TGCACTTACGAAGAGGAGCCGGTGTGGGGAATGCCACCTGCTCGACTGGC
GTAGCCTTTCATGTTAAAATCCCATGGAATGTGCTATAGGGTAAACAAAA
GAGGAGTTGGACTGAGGGTGAAAATTCCCCGGTTCCACCCCTGCCCCCGG
TCAAGAGCGGCAGGGAGACTAATCGACATAATGCGTGGGG back to topprotein sequence of rna8540 >rna8540-protein ID=rna8540-protein|Name=rna8540|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
METHNLGPNGGLVYCMDYLEQNFDWLLERLEALQGRRYVLFDFPGQVELY
THGEAVQRLLQRLEKWGCRLTAVHLVDAHHCSDAGKFISAVLISLTTMVR
LELPHVNVLSKVDLVESYGRLAFDLNFYTDVVDVQRLLPYVGTRSTYKDP
GREGEEGGGREDENGWEEEVREGSIEDGGEGKRDGREAGTSGGGRFARRY
RKLNEALCELIEDFSLVAFHPLNIQDADCIERVLAVVDKCNGYLLGAEER
ALVGREGEAALLSTLSGLAFRAQPDADRVKDVQDRYMDIEDRDENSLSKN
KAR back to topmRNA from alignment at KK037249.1:211539..213923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8540 ID=rna8540|Name=rna8540|organism=Nannochloropsis gaditana|type=mRNA|length=2385bp|location=Sequence derived from alignment at KK037249.1:211539..213923+ (Nannochloropsis gaditana)
AAACGACAAGAAATCATGTACCTCACGTGTGCCAGCATCCGCTTCATACT
AATTTTGGTAGACTGCCTGTTTCTATGGTATACGCACGGAGACATTGATT
CAAACAGAAAAATGACGCAAAGAAAATATCGGCGGGTGCCCGTTGCTCTG
AGCGAGACggccctcctcttttgaGAGCGACAAATATCCCGTAGGAGTGA
ATTCTACTGCATGGCAGCCGGACAGTAAAATTTGGGAGTTGTACTGTGCG
ACATAGAGAGTTGGATGTTTCTTTTAACAATATCCTTTATCTATCACGAA
GTCAGAAgcacggagaaggaggggaggttgaagcaGCGTGTACTGCGTTT
TTAAAGCAGCCATGTGATTTATCTggttccttcttttctccacCAACTTT
CTAAAGATATCAAACAAATGAAGAGAAATCTCATCCATGGACCACGGTTT
GGACAAGCTGTCATCGGCCCTCCCGGTGCTGGGAAGACAACGTATTGCCA
CGGCATAGCCCGTTTCCTGAGTGCGCGGGGTCGACCTGTGGCGGTCGTCA
ACTTGGACCCTGCCAACGATAaacttccttttcctgtcgaCATAGACGTC
TCAGAACTCGTGAATTTGGCGGTAAGGCTTGGACAGGAAAAGGGTGAGAG
GGATCGAGCGCaaagcttcctccgtccGGTGCTGGGAACGGACCCTGAAG
AGGGATGCCACAACGCAATGTGGGTCTAGACGACAGCCGAAAGGATGTGC
ATGGCTTTTGGCTTATGTATGCTGTAAAATCGTTATTTTGGGGGGGTGGT
CTGTTCCCctgttctccctctctttggTCGATCGCTTCCTGTCTGCCCTT
CCTGTCCACGCACTTTTGAGCACAAGTTGCTCTCCCACTCCGGCGTCGAT
GTCGCACAAATATTCCCTCGCCATTCAAACGTCTCTTTCATTGGTACTAC
CCAGGATGTCATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGT
ACTGCATGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTG
GAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGT
ATGCGCGGGGCAATAGTGGTAATGTCCGCGTGTAGAATGCGGGGTTTAGG
GGGGCGTGCTTGATCCACCTGGGAAGGAAAACTGGAGGGGGCTGTCAAGC
AGGGAGGCCTCTTGGACACAGGCAGGGGCTGGTCTCAGGGCCTGTAGTAT
TGTGAGCAAACGCAGGCTATGAAGGTTTTATGAAATGTCGTTCGTGACTC
CTGGTTACTAtcgtatatatatatatacatcgTCCCCTCCCATGGGCCCG
GGCGCCGGTGGtatcccttcctgccctctctctACGCCCGGGGCTCCACG
TGCTCAAACGGTCCTGCACCTtgaccctctttccttctgcACGCGGCGCG
CACCCGAACAGGTCGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCTG
TTGCAACGTCTGGAGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGGT
AGACGCCCACCACTGCAGGTAGGTGGCGTCGCCGATCTGGGGCCGGTAGC
GTTGATTTGAAATGGTGTGATCGTGGTTGACACATGCAAATGGCGGGTAT
AAacatctcctttccccccctaccctgtccttcccttcttagCGATGCCG
GCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAACCATGGTGCGGCTG
GAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATTTGGTCGAATCCTA
TGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGATGTGGTTGATGTGC
AACGTCTTTTGCCCTATGTGGGGACACGATCCACCTACAAAGAcccaggg
cgggaaggggaggagggcggaggcagggaggacgaaaacggatgggaaga
ggaagttaGGGAAGGCTCTATCGAGGATGGGggtgagggaaaaagagacg
gacgggaagcaggaacgtcggggggggggaggttcgCCAGACGGTATCGC
AAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACTTTTCATTGGTCGC
ATTCCATCCCTTGAATATTCAAGATGCCGATTGTATCGAAAGAGTGCTGG
CGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGCAGAAGAAAGAGCa
ctggtgggaagggagggagaagcagctTTGTTGTCAACACTGTCGGGCTT
GGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAGGATGTGCAAGATA
GATACATGGATATCGAAGACAGGGACGAAAATTCCCTGTCAAAAAACAAA
GCGAGATAAAGTAAATATAGCAAGGGGAAAGCATA back to topCoding sequence (CDS) from alignment at KK037249.1:211539..213923+ >rna8540 ID=rna8540|Name=rna8540|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at KK037249.1:211539..213923+ (Nannochloropsis gaditana)
ATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGTGTACTGCATGGA
TTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGACTGGAAGCTTTGC
AAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAGGTCGAGCTCTAC
ACGCATGGCGAGGCGGTTCAACGTCTGTTGCAACGTCTGGAGAAGTGGGG
CTGTCGGTTGACCGCCGTGCATCTGGTAGACGCCCACCACTGCAGCGATG
CCGGCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACAACCATGGTGCGG
CTGGAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGATTTGGTCGAATC
CTATGGGCGCTTGGCTTTTGACTTGAACTTCTACACAGATGTGGTTGATG
TGCAACGTCTTTTGCCCTATGTGGGGACACGATCCACCTACAAAGAccca
gggcgggaaggggaggagggcggaggcagggaggacgaaaacggatggga
agaggaagttaGGGAAGGCTCTATCGAGGATGGGggtgagggaaaaagag
acggacgggaagcaggaacgtcggggggggggaggttcgCCAGACGGTAT
CGCAAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGACTTTTCATTGGT
CGCATTCCATCCCTTGAATATTCAAGATGCCGATTGTATCGAAAGAGTGC
TGGCGGTAGTGGATAAGTGCAATGGATACCTTTTAGGGGCAGAAGAAAGA
GCactggtgggaagggagggagaagcagctTTGTTGTCAACACTGTCGGG
CTTGGCATTCAGAGCACAACCTGACGCGGATCGTGTAAAGGATGTGCAAG
ATAGATACATGGATATCGAAGACAGGGACGAAAATTCCCTGTCAAAAAAC
AAAGCGAGATAAATGGAGACACATAACCTGGGACCCAACGGCGGCCTCGT
GTACTGCATGGATTATTTGGAGCAAAACTTTGACTGGCTGCTTGAACGAC
TGGAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGATTTCCCCGGACAG
GTCGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCTGTTGCAACGTCT
GGAGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGGTAGACGCCCACC
ACTGCAGCGATGCCGGCAAGTTCATTTCGGCCGTGCTCATTTCGTTGACA
ACCATGGTGCGGCTGGAACTCCCCCATGTCAACGTTTTGAGTAAGGTAGA
TTTGGTCGAATCCTATGGGCGCTTGGCTTTTGACTTGAACTTCTACACAG
ATGTGGTTGATGTGCAACGTCTTTTGCCCTATGTGGGGACACGATCCACC
TACAAAGAcccagggcgggaaggggaggagggcggaggcagggaggacga
aaacggatgggaagaggaagttaGGGAAGGCTCTATCGAGGATGGGggtg
agggaaaaagagacggacgggaagcaggaacgtcggggggggggaggttc
gCCAGACGGTATCGCAAGCTAAACGAGGCGTTATGTGAGCTAATAGAGGA
CTTTTCATTGGTCGCATTCCATCCCTTGAATATTCAAGATGCCGATTGTA
TCGAAAGAGTGCTGGCGGTAGTGGATAAGTGCAATGGATACCTTTTAGGG
GCAGAAGAAAGAGCactggtgggaagggagggagaagcagctTTGTTGTC
AACACTGTCGGGCTTGGCATTCAGAGCACAACCTGACGCGGATCGTGTAA
AGGATGTGCAAGATAGATACATGGATATCGAAGACAGGGACGAAAATTCC
CTGTCAAAAAACAAAGCGAGATAAATGGAGACACATAACCTGGGACCCAA
CGGCGGCCTCGTGTACTGCATGGATTATTTGGAGCAAAACTTTGACTGGC
TGCTTGAACGACTGGAAGCTTTGCAAGGACGGCGCTACGTCCTCTTCGAT
TTCCCCGGACAGGTCGAGCTCTACACGCATGGCGAGGCGGTTCAACGTCT
GTTGCAACGTCTGGAGAAGTGGGGCTGTCGGTTGACCGCCGTGCATCTGG
TAGACGCCCACCACTGCAGCGATGCCGGCAAGTTCATTTCGGCCGTGCTC
ATTTCGTTGACAACCATGGTGCGGCTGGAACTCCCCCATGTCAACGTTTT
GAGTAAGGTAGATTTGGTCGAATCCTATGGGCGCTTGGCTTTTGACTTGA
ACTTCTACACAGATGTGGTTGATGTGCAACGTCTTTTGCCCTATGTGGGG
ACACGATCCACCTACAAAGAcccagggcgggaaggggaggagggcggagg
cagggaggacgaaaacggatgggaagaggaagttaGGGAAGGCTCTATCG
AGGATGGGggtgagggaaaaagagacggacgggaagcaggaacgtcgggg
ggggggaggttcgCCAGACGGTATCGCAAGCTAAACGAGGCGTTATGTGA
GCTAATAGAGGACTTTTCATTGGTCGCATTCCATCCCTTGAATATTCAAG
ATGCCGATTGTATCGAAAGAGTGCTGGCGGTAGTGGATAAGTGCAATGGA
TACCTTTTAGGGGCAGAAGAAAGAGCactggtgggaagggagggagaagc
agctTTGTTGTCAACACTGTCGGGCTTGGCATTCAGAGCACAACCTGACG
CGGATCGTGTAAAGGATGTGCAAGATAGATACATGGATATCGAAGACAGG
GACGAAAATTCCCTGTCAAAAAACAAAGCGAGATAA back to top
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