|
|
Properties
| Property Name | Value |
|---|
| Product | u6 snrna-associated sm-like protein lsm1 |
| Orig transcript id | gnl|cribi|Naga_100017g1.326.mrna |
| Orig protein id | gnl|cribi|Naga_100017g1.326 |
| Gene | LSm1 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:474457..475802 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna810 ID=rna810|Name=rna810|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
CGACGTATGCTTTTCCCGGTCTACATCTCATTGCTTTTCTTCGAGTACGC
CACGATTGATGGAGAGCGTAGAGTTTGTGCCAAAGATATCGTAAAACAAC
CTCTTTTCGTACGCACCCAGTTCTTGATTTCGTCCTCTCCCTTCCACAGC
CCCCACCGTCACTCCTCCCTCTTGAACCTTCCTCTGACCTCAACGCACCC
ATGGACCAACTTCTGGAGCCACCCGATGAGGACACGTTGCGTGTCATGAT
TGCGACGGACAACCACGTGGGCTTTCTGGAGCGTGACCCTGTGCGGGGGC
TGGATTCCTTCGCCGCTTTGGAGGAGATCTTCCTCCGGGCGAAAGAGTAC
CACGTGGACTTCGTCCTCCTTGGGGGCGACCTCTTCCACGAAAACAAGCC
CTCGCGCAAGACGCTGCACTCCACGATGGCCATCCTCCGCCGGCACTGTC
TGGGGAGCACGCCCGTCTCCTTCCAGGTCATCTCCGACCCGGCGCCGCAA
GGAGAGGGCCAGGAGGCCTCCCCGCCCGCCTTCTCCCACGTGAACTACGA
GGACCCGAACTACGCCGTGGGCCTGCCCGTCTTCTCCATCCACGGGAACC
ACGACGACCCCACGCGGGACGGGCCCTCGGAGCCCCTGTCGGCCATGGAC
CTGCTGGGGATGACGAACCTGGTCAACTACTTCGGGAAGGCATCCGCCAC
GGACGCCGTGGAGGTGGCGCCTCTCCTTTTGCAGAAGGGCCGGACCTGCA
TGGCCCTGTACGGCCTCGGGAACATGCGGGACGAGCGCCTGAACCGGATG
TGGCAGAAAAAGAAAATCAAGTTCCTTCGGCACGCGCCTCGGGAAAGAGG
GGCGGCGCCGGACTTCTTCTCCTTGTTCGCGCTGCACCAGAACCGAGACA
CGGGCCGCGGGCAGAAGAACTGCGTGCAGGAAAGCATGATCCCGGAGTGG
ATGGACTTGGTGGTGTGGGGGCACGAGCACGAATGCTTGGTCCGCCCGAC
GCGCTCCCTGGCCGGGGGCTTCTACATCTCCCAGCCGGGCTCCTCGGTCG
CCACCTCCCTCGTGGAGGGAGAGGCCACGCCCAAGCAAGTGGGCGTCCTG
GACGTGCGAGAGGGGAACTTCCGGCTCTTTCCCGTGCCGCTCCGACAGGT
GCGCGCCTTCATCCTCAAAGAAGTCCGGCTCTCGGCCCTGGCAGGCCTCG
ATCCGCACCATCCCCGCGCCGAGGAGCAGGTCCAGGCGGCCTTGGAAAGG
GAGGTTCGGGCCCTGATTCACGAGGCCCGCGAGGACCACCCCCCCCCCGC
CCCTCCCTGGGCAGTGCTTGCGCCTCCGGCACCCGGAGCAGGTCTTGGTG
CGCCTGAAGGTGGAGTACTCGGGTTTCTTCACCCTCAACAACCAACGCTT
TGGGCAGCGTTTCCTGGGCCAGGTCGCGAACCCTTCCGACATCCTCCTCT
TCTACCGGGCGCGGAAGGGGGAGCGCGGGGACGGGGGGAGCCGGGGACGG
GGGGGCGGGGGGCCGAGTGGCGAGGGAGGGTCGGGCGGGGGTGTGGGGGG
AGCGGGAGGAGGTGAAGGTGGAGGACTTGGTCCGGCTGGAGGTGGAGGAG
TCGGAGAAGAAGTTGAAGCTGATGACGGAGCCGGAGCTGCACGAGGCGCT
GGAGGACTTTGTGAGCAAGAACACGGC back to topprotein sequence of rna810 >rna810-protein ID=rna810-protein|Name=rna810|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSE
PPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHP
PPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMP
PGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHP
SAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYML
PPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNM
VLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTT
EEILELLQGSGEAGAKLEWDFE back to topmRNA from alignment at CM002456.1:474457..475802- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna810 ID=rna810|Name=rna810|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp|location=Sequence derived from alignment at CM002456.1:474457..475802- (Nannochloropsis gaditana)
AAACGAGGTCACCAACCCGCGCAACAACGTGCACCAAGAAAACAAAGGGA
GCATACTATGCCCGGGTCAAGAGATAACGACTGCCATTTTAAAATTGACA
AAGGGCTTTGATATTTCCGTAGGATTAGTTTTTCGTTCCAGCCACCCTAC
CTTTCGACATAGGATATCTTCTTTCCATACCCTGATACCAGCTCCTCTCT
CACCATTGCTTTCTGAATGCCCTGTTTTCTCGTTTTCCGCGCTTCCTCGT
ACAGTACGGGATCTCAATCCAATAAAAATCCCATGGAGCCTGGCCCTGGT
AAGCCGAGGCCTCTGCAAGGGGTTTGGGCCCAGCCACGGTCCAGACCCTC
GCCTCCGTCGTCAGAGCCCCCCTCCGCCTCTGCAAACAGTGGGCTAACCG
GCACCAAAATCGAGCTAAGCGATTTGTTTGGGGCTAGACCCAGCGTTCCT
CAATCGACTGGGACTGGCCAGGCCCCTCCGTTTCCTGTGCAGCCGCAGTA
TCTCCAGCATCACCCACCACCACAGGCGCAAGCCCCACCACACTATCCAC
AGACGACTCCCCCAATACAGTACCCTCCGCACCAAGTCCAAGCGCATGCG
TCTGCGCCCCATCAACTGGCCTTCCCGGCCTCGCACCCTTTTCACGCCCG
CCCCCACCCCATGCCGCCGGGCGCCATGACTATGCACGGCCGCCCACCCC
CGGGCCTCACGGGCAACGGCTTCGCCTCCCCCTCCGGCTCCCCCCCATCG
GCACCTCCCTTCCATCCCAACGCCCCTCCGCCCTTCCCACCGCAGCAAGC
GCAGCCCCTCCATCCATCAGCGCACATGCACCCTCCTCAATCCCTCGCGT
CCACGTCCACGGCTCCCGGTCCGCGTCCTCCGCAGCTCCAGCAGGAGCAA
CTGCAACAACTCCGTATGATGATGCACGCAGGTGGGGCACCGCAACCGGG
GCCTCACTACATGCTTCCTCCGCGGCCGTTCGTGGCGGTCCTCCCCGACT
ACCTCCCCGGGGCGGCCTCTCTGGTCGAGCAGTTGGACCGGCGGGTGCTG
GTGGTGTTGCGGGACGGTCGCAACCTCGTCGGGGTCATGCGGTCTTTCGA
CCAGTTCTCGAACATGGTCTTGGAGGACACCTACGAGCGGCACGTGGTGG
ACGGCAAGTATGGCGACTTGCCCCTGGGCCTGTATCTGGTCCGGGGGGAC
GCCGTGGTGCTCTTGGGAGAGGTGGAGGCGGAGCGGGAGGGGAAGAGCCT
GGAGAAGGTGACGACGGAGGAGATCCTCGAGCTCTTGCAGGGGTCGGGGG
AGGCGGGGGCCAAGTTAGAGTGGGATTTTGAATGAGGCGGGGAGGG back to topCoding sequence (CDS) from alignment at CM002456.1:474457..475802- >rna810 ID=rna810|Name=rna810|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002456.1:474457..475802- (Nannochloropsis gaditana)
ATGCCCTGTTTTCTCGTTTTCCGCGCTTCCTCGTACAGTACGGGATCTCA
ATCCAATAAAAATCCCATGGAGCCTGGCCCTGGTAAGCCGAGGCCTCTGC
AAGGGGTTTGGGCCCAGCCACGGTCCAGACCCTCGCCTCCGTCGTCAGAG
CCCCCCTCCGCCTCTGCAAACAGTGGGCTAACCGGCACCAAAATCGAGCT
AAGCGATTTGTTTGGGGCTAGACCCAGCGTTCCTCAATCGACTGGGACTG
GCCAGGCCCCTCCGTTTCCTGTGCAGCCGCAGTATCTCCAGCATCACCCA
CCACCACAGGCGCAAGCCCCACCACACTATCCACAGACGACTCCCCCAAT
ACAGTACCCTCCGCACCAAGTCCAAGCGCATGCGTCTGCGCCCCATCAAC
TGGCCTTCCCGGCCTCGCACCCTTTTCACGCCCGCCCCCACCCCATGCCG
CCGGGCGCCATGACTATGCACGGCCGCCCACCCCCGGGCCTCACGGGCAA
CGGCTTCGCCTCCCCCTCCGGCTCCCCCCCATCGGCACCTCCCTTCCATC
CCAACGCCCCTCCGCCCTTCCCACCGCAGCAAGCGCAGCCCCTCCATCCA
TCAGCGCACATGCACCCTCCTCAATCCCTCGCGTCCACGTCCACGGCTCC
CGGTCCGCGTCCTCCGCAGCTCCAGCAGGAGCAACTGCAACAACTCCGTA
TGATGATGCACGCAGGTGGGGCACCGCAACCGGGGCCTCACTACATGCTT
CCTCCGCGGCCGTTCGTGGCGGTCCTCCCCGACTACCTCCCCGGGGCGGC
CTCTCTGGTCGAGCAGTTGGACCGGCGGGTGCTGGTGGTGTTGCGGGACG
GTCGCAACCTCGTCGGGGTCATGCGGTCTTTCGACCAGTTCTCGAACATG
GTCTTGGAGGACACCTACGAGCGGCACGTGGTGGACGGCAAGTATGGCGA
CTTGCCCCTGGGCCTGTATCTGGTCCGGGGGGACGCCGTGGTGCTCTTGG
GAGAGGTGGAGGCGGAGCGGGAGGGGAAGAGCCTGGAGAAGGTGACGACG
GAGGAGATCCTCGAGCTCTTGCAGGGGTCGGGGGAGGCGGGGGCCAAGTT
AGAGTGGGATTTTGAATGA back to top
|