EWM29828.1, cds810 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|585112409|gb|EWM29828.1| (u6 snrna-associated sm-like protein lsm1 [Nannochloropsis gaditana]) HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0 Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0
Query: 1 MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE 372
MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE
Sbjct: 1 MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE 372
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|299472050|emb|CBN80133.1| (Sm-like protein LSm1 [Ectocarpus siliculosus]) HSP 1 Score: 134.035 bits (336), Expect = 9.988e-35 Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 0
Query: 265 GAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK-SLEKVTTEEILELLQ-GSGEA--GAKLEWDFE 372
G+ASL EQLD+RV+VVLRDGR+LVGVMRS+DQFSN+VLEDT+ERH V +GD+ LGLYLVRGDA+VL+GE++ RE L +V+ +EI+E Q S E AKL+W F+
Sbjct: 24 GSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 135
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|676397267|ref|XP_009041911.1| (hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens] >gi|323447461|gb|EGB03380.1| hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens]) HSP 1 Score: 129.798 bits (325), Expect = 2.696e-33 Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 0
Query: 263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVV--DGK-----YGDLPLGLYLVRGDAVVLLGEVEAEREGKS-------LEKVTTEEILELLQGSGEAGAKLEWDFE 372
LP AASLV+QLD++VL++LRDGRNLVGVMRSFDQFSN+VLEDTYER VV D + YGD+PLGLY++RGD+VVLLGEV E E +E V L+ SG + WD E
Sbjct: 10 LPAAASLVDQLDKKVLIILRDGRNLVGVMRSFDQFSNVVLEDTYERRVVIPDDESQPAVYGDVPLGLYVIRGDSVVLLGEVAEELEASEDHPRQLPIEDVVA------LERSGAGTTAVVWDIE 127
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|673029628|ref|XP_008868775.1| (hypothetical protein H310_05739 [Aphanomyces invadans] >gi|574475170|gb|ETW02170.1| hypothetical protein H310_05739 [Aphanomyces invadans]) HSP 1 Score: 124.405 bits (311), Expect = 2.972e-31 Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVE--AEREGKSLEKVTTEEIL--ELLQGS-GEAGAKLEWDFE 372
PG +SLVEQLD+++LVVLRDGR+LVG++RSFDQFSN+VLE T ERH+V Y D+PLGLY++RG+ +VL+GE++ E EG +L + EE+L E+ Q G + + EW+F+
Sbjct: 7 FPGVSSLVEQLDKQLLVVLRDGRHLVGMLRSFDQFSNIVLEGTCERHIVGNTYCDIPLGLYIIRGENIVLMGELDPVKEAEGVNLVQKDAEEVLTAEMEQNEQGVSTVRDEWNFD 121
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|698801648|ref|XP_009833853.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574111446|gb|ETV76942.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 122.865 bits (307), Expect = 9.980e-31 Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 0
Query: 263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILELLQGSGEAG---AKLEWDFE 372
PG +SLVEQLD+++LVVLRDGR+LVG++RSFDQFSN+VLE T ERHVV Y D+PLGLY++RG+ +VL+GE++ +E + +L + + EE+L E G + W+F+
Sbjct: 7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNFD 121
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|669157904|ref|XP_008614514.1| (hypothetical protein SDRG_10308 [Saprolegnia diclina VS20] >gi|530733870|gb|EQC32112.1| hypothetical protein SDRG_10308 [Saprolegnia diclina VS20]) HSP 1 Score: 121.324 bits (303), Expect = 3.118e-30 Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 0
Query: 263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILEL---LQGSGEAGAKLEWDFE 372
PG S+ E LD+++LVVLRDGR+LVGV RSFDQ+SN+VL+DT ERHVV Y D+PLGLY++RG+ +V++GE++ E+E +L K T EE+L L +G + W+F+
Sbjct: 4 FPGVTSMTELLDKQMLVVLRDGRHLVGVFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLIKKTPEEVLAAEADLHDTGAVTVRGTWNFD 118
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|1173950141|gb|OQR98120.1| (U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Achlya hypogyna]) HSP 1 Score: 119.783 bits (299), Expect = 1.403e-29 Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 0
Query: 263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILELLQGSGEAG---AKLEWDFE 372
PG S+ E LD+++LVVLRDGR+LVG+ RSFDQ+SN+VL+DT ERHVV Y D+PLGLY++RG+ +V++GE++ E+E +L K T EE+L +AG + W+F+
Sbjct: 4 FPGVTSMTELLDKQMLVVLRDGRHLVGMFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLVKKTPEEVLAAEADQNDAGVATVRGTWNFD 118
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|1176064962|ref|XP_020602680.1| (U6 snRNA-associated Sm-like protein LSm1 [Orbicella faveolata]) HSP 1 Score: 120.168 bits (300), Expect = 1.868e-29 Identity = 54/95 (56.84%), Postives = 79/95 (83.16%), Query Frame = 0
Query: 262 YLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEILE 355
+LPG ASLV+++D+R++VVLRDGR L+G +RS DQF+N++L+DT ER V GKYGD+P G++LVRG+ +VL+GE++ E+E K L++V+ EILE
Sbjct: 3 FLPGTASLVKEIDKRLMVVLRDGRTLIGYLRSIDQFANLLLQDTIERIHVGGKYGDIPRGIFLVRGENMVLVGEIDEEKEAKCELQEVSVAEILE 97
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|919031657|ref|XP_013399453.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Lingula anatina]) HSP 1 Score: 119.398 bits (298), Expect = 3.435e-29 Identity = 56/95 (58.95%), Postives = 77/95 (81.05%), Query Frame = 0
Query: 261 DYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEIL 354
+YLPG ASL+E++D+++LVVLRDGR L+G +RS DQF+N+VL T ER V KYGD+P G+++VRG+ VVLLGE++ E+EG+ LE+V EEIL
Sbjct: 2 NYLPGTASLIEEIDKKLLVVLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKKYGDIPRGIFVVRGENVVLLGEIDMEKEGQLPLEEVKIEEIL 96
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|290987543|ref|XP_002676482.1| (predicted protein [Naegleria gruberi] >gi|284090084|gb|EFC43738.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 119.783 bits (299), Expect = 3.782e-29 Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 0
Query: 262 YLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILEL 356
Y PGAASL +QLD++V+V+LRDG+ L+G++R +DQF NM LE T ER VV+ KYGDL +GLY+VRG+ VVL+GEV+ R+ SL++V +EIL L
Sbjct: 18 YFPGAASLSDQLDKKVMVILRDGKKLIGILRCYDQFVNMTLEKTVERIVVEDKYGDLDVGLYIVRGENVVLMGEVDESRDL-SLKQVPVDEILML 111 The following BLAST results are available for this feature:
BLAST of EWM29828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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