EWM29828.1, cds810 (CDS) Nannochloropsis gaditana

Overview
NameEWM29828.1
Unique Namecds810
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:474468..475586 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29828.1
Productu6 snrna-associated sm-like protein lsm1
Orig transcript idgnl|cribi|Naga_100017g1.326.mrna
GeneLSm1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:474468..475586 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|585112409|gb|EWM29828.1| (u6 snrna-associated sm-like protein lsm1 [Nannochloropsis gaditana])

HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0
Query:    1 MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE 372
            MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE
Sbjct:    1 MPCFLVFRASSYSTGSQSNKNPMEPGPGKPRPLQGVWAQPRSRPSPPSSEPPSASANSGLTGTKIELSDLFGARPSVPQSTGTGQAPPFPVQPQYLQHHPPPQAQAPPHYPQTTPPIQYPPHQVQAHASAPHQLAFPASHPFHARPHPMPPGAMTMHGRPPPGLTGNGFASPSGSPPSAPPFHPNAPPPFPPQQAQPLHPSAHMHPPQSLASTSTAPGPRPPQLQQEQLQQLRMMMHAGGAPQPGPHYMLPPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILELLQGSGEAGAKLEWDFE 372          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|299472050|emb|CBN80133.1| (Sm-like protein LSm1 [Ectocarpus siliculosus])

HSP 1 Score: 134.035 bits (336), Expect = 9.988e-35
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 0
Query:  265 GAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK-SLEKVTTEEILELLQ-GSGEA--GAKLEWDFE 372
            G+ASL EQLD+RV+VVLRDGR+LVGVMRS+DQFSN+VLEDT+ERH V   +GD+ LGLYLVRGDA+VL+GE++  RE    L +V+ +EI+E  Q  S E    AKL+W F+
Sbjct:   24 GSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 135          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|676397267|ref|XP_009041911.1| (hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens] >gi|323447461|gb|EGB03380.1| hypothetical protein AURANDRAFT_72740 [Aureococcus anophagefferens])

HSP 1 Score: 129.798 bits (325), Expect = 2.696e-33
Identity = 70/124 (56.45%), Postives = 84/124 (67.74%), Query Frame = 0
Query:  263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVV--DGK-----YGDLPLGLYLVRGDAVVLLGEVEAEREGKS-------LEKVTTEEILELLQGSGEAGAKLEWDFE 372
            LP AASLV+QLD++VL++LRDGRNLVGVMRSFDQFSN+VLEDTYER VV  D +     YGD+PLGLY++RGD+VVLLGEV  E E          +E V        L+ SG     + WD E
Sbjct:   10 LPAAASLVDQLDKKVLIILRDGRNLVGVMRSFDQFSNVVLEDTYERRVVIPDDESQPAVYGDVPLGLYVIRGDSVVLLGEVAEELEASEDHPRQLPIEDVVA------LERSGAGTTAVVWDIE 127          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|673029628|ref|XP_008868775.1| (hypothetical protein H310_05739 [Aphanomyces invadans] >gi|574475170|gb|ETW02170.1| hypothetical protein H310_05739 [Aphanomyces invadans])

HSP 1 Score: 124.405 bits (311), Expect = 2.972e-31
Identity = 62/115 (53.91%), Postives = 87/115 (75.65%), Query Frame = 0
Query:  263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVE--AEREGKSLEKVTTEEIL--ELLQGS-GEAGAKLEWDFE 372
             PG +SLVEQLD+++LVVLRDGR+LVG++RSFDQFSN+VLE T ERH+V   Y D+PLGLY++RG+ +VL+GE++   E EG +L +   EE+L  E+ Q   G +  + EW+F+
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGMLRSFDQFSNIVLEGTCERHIVGNTYCDIPLGLYIIRGENIVLMGELDPVKEAEGVNLVQKDAEEVLTAEMEQNEQGVSTVRDEWNFD 121          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|698801648|ref|XP_009833853.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574111446|gb|ETV76942.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 122.865 bits (307), Expect = 9.980e-31
Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 0
Query:  263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILELLQGSGEAG---AKLEWDFE 372
             PG +SLVEQLD+++LVVLRDGR+LVG++RSFDQFSN+VLE T ERHVV   Y D+PLGLY++RG+ +VL+GE++  +E +  +L + + EE+L       E G    +  W+F+
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNFD 121          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|669157904|ref|XP_008614514.1| (hypothetical protein SDRG_10308 [Saprolegnia diclina VS20] >gi|530733870|gb|EQC32112.1| hypothetical protein SDRG_10308 [Saprolegnia diclina VS20])

HSP 1 Score: 121.324 bits (303), Expect = 3.118e-30
Identity = 58/115 (50.43%), Postives = 82/115 (71.30%), Query Frame = 0
Query:  263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILEL---LQGSGEAGAKLEWDFE 372
             PG  S+ E LD+++LVVLRDGR+LVGV RSFDQ+SN+VL+DT ERHVV   Y D+PLGLY++RG+ +V++GE++ E+E    +L K T EE+L     L  +G    +  W+F+
Sbjct:    4 FPGVTSMTELLDKQMLVVLRDGRHLVGVFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLIKKTPEEVLAAEADLHDTGAVTVRGTWNFD 118          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|1173950141|gb|OQR98120.1| (U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Achlya hypogyna])

HSP 1 Score: 119.783 bits (299), Expect = 1.403e-29
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 0
Query:  263 LPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGK--SLEKVTTEEILELLQGSGEAG---AKLEWDFE 372
             PG  S+ E LD+++LVVLRDGR+LVG+ RSFDQ+SN+VL+DT ERHVV   Y D+PLGLY++RG+ +V++GE++ E+E    +L K T EE+L       +AG    +  W+F+
Sbjct:    4 FPGVTSMTELLDKQMLVVLRDGRHLVGMFRSFDQYSNIVLQDTCERHVVGNTYCDIPLGLYIIRGENIVIMGELDQEKEASQVNLVKKTPEEVLAAEADQNDAGVATVRGTWNFD 118          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|1176064962|ref|XP_020602680.1| (U6 snRNA-associated Sm-like protein LSm1 [Orbicella faveolata])

HSP 1 Score: 120.168 bits (300), Expect = 1.868e-29
Identity = 54/95 (56.84%), Postives = 79/95 (83.16%), Query Frame = 0
Query:  262 YLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEILE 355
            +LPG ASLV+++D+R++VVLRDGR L+G +RS DQF+N++L+DT ER  V GKYGD+P G++LVRG+ +VL+GE++ E+E K  L++V+  EILE
Sbjct:    3 FLPGTASLVKEIDKRLMVVLRDGRTLIGYLRSIDQFANLLLQDTIERIHVGGKYGDIPRGIFLVRGENMVLVGEIDEEKEAKCELQEVSVAEILE 97          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|919031657|ref|XP_013399453.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Lingula anatina])

HSP 1 Score: 119.398 bits (298), Expect = 3.435e-29
Identity = 56/95 (58.95%), Postives = 77/95 (81.05%), Query Frame = 0
Query:  261 DYLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEIL 354
            +YLPG ASL+E++D+++LVVLRDGR L+G +RS DQF+N+VL  T ER  V  KYGD+P G+++VRG+ VVLLGE++ E+EG+  LE+V  EEIL
Sbjct:    2 NYLPGTASLIEEIDKKLLVVLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKKYGDIPRGIFVVRGENVVLLGEIDMEKEGQLPLEEVKIEEIL 96          
BLAST of EWM29828.1 vs. NCBI_GenBank
Match: gi|290987543|ref|XP_002676482.1| (predicted protein [Naegleria gruberi] >gi|284090084|gb|EFC43738.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 119.783 bits (299), Expect = 3.782e-29
Identity = 56/95 (58.95%), Postives = 76/95 (80.00%), Query Frame = 0
Query:  262 YLPGAASLVEQLDRRVLVVLRDGRNLVGVMRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKSLEKVTTEEILEL 356
            Y PGAASL +QLD++V+V+LRDG+ L+G++R +DQF NM LE T ER VV+ KYGDL +GLY+VRG+ VVL+GEV+  R+  SL++V  +EIL L
Sbjct:   18 YFPGAASLSDQLDKKVMVILRDGKKLIGILRCYDQFVNMTLEKTVERIVVEDKYGDLDVGLYIVRGENVVLMGEVDESRDL-SLKQVPVDEILML 111          
The following BLAST results are available for this feature:
BLAST of EWM29828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112409|gb|EWM29828.1|0.000e+0100.00u6 snrna-associated sm-like protein lsm1 [Nannochl... [more]
gi|299472050|emb|CBN80133.1|9.988e-3561.61Sm-like protein LSm1 [Ectocarpus siliculosus][more]
gi|676397267|ref|XP_009041911.1|2.696e-3356.45hypothetical protein AURANDRAFT_72740 [Aureococcus... [more]
gi|673029628|ref|XP_008868775.1|2.972e-3153.91hypothetical protein H310_05739 [Aphanomyces invad... [more]
gi|698801648|ref|XP_009833853.1|9.980e-3151.30hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|669157904|ref|XP_008614514.1|3.118e-3050.43hypothetical protein SDRG_10308 [Saprolegnia dicli... [more]
gi|1173950141|gb|OQR98120.1|1.403e-2949.57U6 snRNA-associated Sm-like protein LSm1-like isof... [more]
gi|1176064962|ref|XP_020602680.1|1.868e-2956.84U6 snRNA-associated Sm-like protein LSm1 [Orbicell... [more]
gi|919031657|ref|XP_013399453.1|3.435e-2958.95PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
gi|290987543|ref|XP_002676482.1|3.782e-2958.95predicted protein [Naegleria gruberi] >gi|28409008... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna810rna810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications