rna8040, rna8040 (mRNA) Nannochloropsis gaditana

Overview
Namerna8040
Unique Namerna8040
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2541
Alignment locationKK037247.1:417047..418168 -

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Properties
Property NameValue
Product1-family small gtpase
Orig transcript idgnl|cribi|Naga_100023g28.3990.mrna
Orig protein idgnl|cribi|Naga_100023g28.3990
GeneARFRP1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:417047..418168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ARFRP1gene7784Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8040rna8040-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22674.1cds8018Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8040 ID=rna8040|Name=rna8040|organism=Nannochloropsis gaditana|type=mRNA|length=2541bp
TCGAAAGCAATATGACACAGGACCCATAGCGGGGGCTGGGATGGGATGCG
CAGAGACTATGGATCGTTTATCACCCCCAAACGCCAGAGAGGTCCAAATT
TGTCGTCGTGGGCTCTTCGCGGCAGAGATGTTTTCTTTTGGTGCGCGTTA
TTAGCGGCTACTTGCCTGCTAAGCTGTTGGAGAGGCACCCAAACAGACGA
ATTGAATCGTAAGCCGGGCATTGCATCTCGTCTTCGAAGACGCGTAGCAT
CTCTGCCGCTAAGGCACCAGGTCCTTGCGGAGGGGAAGGCCGACCTACGA
CGTGGTGACAGACAACTTGGGGCCGCGAGCAGCTCTAGGGTAGGGTCATG
GGTCTGGCAGCGCCGGAAGCGCGCCTTCGACAGCCCTGCAGAAAGAGCTT
GTAAAGTCTTCTGCGAGGGCGAGCTGTTGAGGGCAGTCCAGACGGCCGGA
ATCTTCCAAGACTCGAAGGAGTTTGTAGACATGTCCATGCGTATGGATCC
CGAGGTGGTCCTTGAAAAGTTCTATGCCCTCAGACCTGAGGAAAGAAAAG
ACCCGAAAATCCTCGCTGCTTTCGTAAGTGAGCACTTCTCGACCCCAGGC
TCGGAGCTAGTGGCCATACAGCCCCAAGACTTCACCGACTCGCCCTCCGT
TTTGCAGAGCCTGACACCCGGCTCCTCCTACTACGCATGGGCCCAAACCT
TGAACCAGGCCTTCGCCTCTTTGACACGCAAGGTCTCCGACGACGTCTTC
CTGAACCCGCAGCGGTACTCGATCCTGCGGCGCACGCACCCAGTGGTAAT
CCCTGGCGGGCGTTTCCGGGAAAGCTACTACTGGGACTCGTACTGGATCG
TCTTGGGGCTCTTGGCCTGCGACATGAAGGACACTGCCCGGGGCCTGGTG
CAGAACTTGTTGGACGACGTGGCCAACTTTGGCTTCGTGCCCAATGGCGG
CCGTATCTACTACCTGAACCGCTCCCAGCCCCCTTTGCTCTCGGAGATGG
TGCTGGCCTTACTGGAGGCTGACGCTGGTCTTATGGAAGACGCAGATTTT
GTAGCCTCCGCAACCACCCTTCTGGACGCTGAGTATACCTTCTGGATGGA
AGAGGGCAATCACGCCGTAGCGTTGGAGGACAAAGAAGGCCACGCTCATG
TGCTCAACCGGTATTGGACTTCGACGAGCTACCCGCGGCCAGAATCGTTC
AAGGAGGATCTCGCAAGCAAGTCGGAGGCTAACGGAACATGGGAAATGCA
CGGAGGCTTGTTCGCCAACATAGCCGCGGGCGCCGAGTCGGGCTGGGATT
TCTCCTCGCGATGGATCCCCCCCGGTCCCAATGGCACCTTTTCCATGAGC
GCAATTGAAACGAGCAACGTGCTTCCCGTGGAGCTGAACGCATACCTCTA
TCGCATGGAGCGCAATTTGGCCCGTCTTCACGAGCTTCAAAGCTCAGCAA
CGCTCCCGAAATTCCCATTCAGGGCAACTAATCTGCGACCCAGCGAAAGA
AAGGCGGCCGACATCCTGACGTCGCCCACAGCAATCAAGTACAGTTTAAG
CGCAGATAAAAGAGCAGTAGCCATGGACAAGTTCATGTGGGACGGAGAGT
CAGGGATGTGGCGAGACTATGTGATCCATTCACACGCGGGCCGGCCGTCT
CCAGGAGGCGGCGCCACGTCGGTATCGAATTTTATTCCGTTGTGGGCGGG
GTTGACCGCAAATCCGCTCGTGACGGACGGCTCCATCAAGGTGGCCCAGG
CCATTGCGACGCTGAAAGCAAGCGCGCTTGTACAGGTCGGCGGACTGCAG
ACGACGGTGAAAAGTACGAGAGAGCAGTGGGATCGACCCAACGCCTGGCC
GCCATTACAGCAGCTAATGATCGAGGGCTTGGTCCGCACCAATATCTCCG
AAGGCATTCAACTGGCAGAGGAGCTGGCTAAGGCATGGCTGGAGAGCAAT
TACTTGGGCTTCGCCAACAGCGGCTACATGCACGAGAAGTACAACGCCTT
TATACCAGGAGCGCGGGGGGAAGGCGGTGAATACTACCCTCAGGTAGGCT
TTGGCTGGACGAACGGAGTCGTATTGCACTTGCTAAAATTCTACGGGGAC
AGCTGGGCTGTGCTTGGAGATAACGCCATGCTCAGTGAAGCAGATGAGGA
ACCAAGCTCACGACCAGCCGCTTCGGCATTCGATGTTTCCGACGTGGGAA
GTGTTGAGGTGGAGCACACAAGTATAACGACACGAGAAGAAGGGGACAGA
GCCGTACGGGAGCGGCGAGAGAGGGTGATGGAGATCGAAGGTGGAGGCAT
TTGACTGTTCGCCTTGTCTCCTCTTGTAGATGATTCTGAGGGCCGGGAGG
CGCGCGCCTGTCTTCCTTCGTGTAATTTATGTAAGGATGGAGTGGAATAT
CTGGGACTCAAAGTAGAGCACATAGTCGTACGGAATCATCCAGGAAATAA
AAAGAATTCGCCTCCTTCGATGCCCTGGTCTCGTACACTACCGGGCATAG
GTCACGGAGTGTGGAAAGTACTGAGCTGACCGCGATTTCAA
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protein sequence of rna8040

>rna8040-protein ID=rna8040-protein|Name=rna8040|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPE
KITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLD
AADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESF
EIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKLD
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mRNA from alignment at KK037247.1:417047..418168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8040 ID=rna8040|Name=rna8040|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp|location=Sequence derived from alignment at KK037247.1:417047..418168- (Nannochloropsis gaditana)
AACGGCAGCAGGCCCCAAACTACAGGAGTATAGGTCGCGGTACAGGCTGC
GAATTCCGTAACCAAGACTCGTTTGCGCGCCCTTGCGTCGATTATTGTCT
CCCTCCCCGCGGTGGGGCAAAAAAATGGTAGGTTGATAGTCATGTTACGG
CCCCAGCCATGCCTTTAAATTGGTGACGTTGCCTTTACATGAATTGGACG
CACGATCGGATATTCGGCGGATGCGATTATTTGCTTTCGCAAGATCGGGT
TGAGTCCTCAAACCTTGCTCATCTTGAACCGCTCTTACTCTCATCACGTA
CATGTGATGGACTAGTGTGCAGCTTTCTCTTATGTGTTGACGCCCCAGTG
GCACAAATATTCAACTTACCAACACACGCTTGACGTGCACCCGCAGTTCT
CACTTCTCGCGGGCTTCATCAAGTACCTTTTCTCCAAAACGGAAGTGCAT
GTTCTAATCCTTGGGCTGGACCACGCGGGAAAGACCACGCTGTTGGAGCA
GTCGAAGGGAATTTTTCGAAAAGTGCAAGGCATTCCTCCAGAGAAAATAA
CGCCGACAGTCGGTCTAAATGTTGGAAAGATGGACATCGAGGGCTGCTTT
GTGATCCTGTGGGATCTGGGAGGCCAAGTGCGAATGCGTTCCATCTGGGA
CAAATACTACGCGGACGCTCACGGTGTGGTCTTTGTGCTCGATGCTGCTG
ATGTAGGCCGTTTTGAGGAGGCGAAGCTTGCGTTCGCCAGCATTTTGGAC
CATGAGGACCTCGGAGACGTCCCCGTCTTGCTTTTTGCGAACAAACAGGA
CCTGCCGGGGGCACTTTCAGAGGAAGACGTGGCGGAGTCCTTTGAGATAG
ACAGGGTGCTGCGACACAGGGTGATACAGGTACATTCTTGCAGTGCGCTG
ACTTGTGAAGGCCTAGAAAGTGGGGTCCGGTGGCTGGTGCAGGAGGCCAA
GGGGCTGGCAAGGAAATTGGATTGAGATCTCACATGAACGACGGAATGTT
GAGAGGGACTGACAGCTACAAAATGGCCGGAGCCCCGAAAATAACTTGTA
CCATGGGCGCGTTCAAAATTCCGCAAATAAAAGTATCAGGAAGAAGTAAA
GAGAATTGAAATCGCGGTCAGC
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Coding sequence (CDS) from alignment at KK037247.1:417047..418168-

>rna8040 ID=rna8040|Name=rna8040|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at KK037247.1:417047..418168- (Nannochloropsis gaditana)
TTCTCACTTCTCGCGGGCTTCATCAAGTACCTTTTCTCCAAAACGGAAGT
GCATGTTCTAATCCTTGGGCTGGACCACGCGGGAAAGACCACGCTGTTGG
AGCAGTCGAAGGGAATTTTTCGAAAAGTGCAAGGCATTCCTCCAGAGAAA
ATAACGCCGACAGTCGGTCTAAATGTTGGAAAGATGGACATCGAGGGCTG
CTTTGTGATCCTGTGGGATCTGGGAGGCCAAGTGCGAATGCGTTCCATCT
GGGACAAATACTACGCGGACGCTCACGGTGTGGTCTTTGTGCTCGATGCT
GCTGATGTAGGCCGTTTTGAGGAGGCGAAGCTTGCGTTCGCCAGCATTTT
GGACCATGAGGACCTCGGAGACGTCCCCGTCTTGCTTTTTGCGAACAAAC
AGGACCTGCCGGGGGCACTTTCAGAGGAAGACGTGGCGGAGTCCTTTGAG
ATAGACAGGGTGCTGCGACACAGGGTGATACAGGTACATTCTTGCAGTGC
GCTGACTTGTGAAGGCCTAGAAAGTGGGGTCCGGTGGCTGGTGCAGGAGG
CCAAGGGGCTGGCAAGGAAATTGGATTGAATGTTCTCACTTCTCGCGGGC
TTCATCAAGTACCTTTTCTCCAAAACGGAAGTGCATGTTCTAATCCTTGG
GCTGGACCACGCGGGAAAGACCACGCTGTTGGAGCAGTCGAAGGGAATTT
TTCGAAAAGTGCAAGGCATTCCTCCAGAGAAAATAACGCCGACAGTCGGT
CTAAATGTTGGAAAGATGGACATCGAGGGCTGCTTTGTGATCCTGTGGGA
TCTGGGAGGCCAAGTGCGAATGCGTTCCATCTGGGACAAATACTACGCGG
ACGCTCACGGTGTGGTCTTTGTGCTCGATGCTGCTGATGTAGGCCGTTTT
GAGGAGGCGAAGCTTGCGTTCGCCAGCATTTTGGACCATGAGGACCTCGG
AGACGTCCCCGTCTTGCTTTTTGCGAACAAACAGGACCTGCCGGGGGCAC
TTTCAGAGGAAGACGTGGCGGAGTCCTTTGAGATAGACAGGGTGCTGCGA
CACAGGGTGATACAGGTACATTCTTGCAGTGCGCTGACTTGTGAAGGCCT
AGAAAGTGGGGTCCGGTGGCTGGTGCAGGAGGCCAAGGGGCTGGCAAGGA
AATTGGATTGAATG
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Synonyms
Publications