ARFRP1, gene7784 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	ARFRP1
Unique Name	gene7784
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:417047..418168 -

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100023g28
Gene biotype	protein_coding
Gene	ARFRP1
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:417047..418168 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
GO annotation for N. gaditana B31	2020-04-08
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005794	Golgi apparatus

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL062	ngnoL062	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region
ngnoL060	ngnoL060	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G01490	NO21G01490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna8040	rna8040-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna8040	rna8040	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna8040

>rna8040-protein ID=rna8040-protein|Name=rna8040|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPE
KITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLD
AADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESF
EIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKLD

Synonyms

Publications