EWM22674.1, cds8018 (CDS) Nannochloropsis gaditana

Overview
NameEWM22674.1
Unique Namecds8018
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:418042..418044 -
Alignment locationKK037247.1:417194..417772 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22674.1
Product1-family small gtpase
Orig transcript idgnl|cribi|Naga_100023g28.3990.mrna
GeneARFRP1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:418042..418044 -
KK037247.1supercontigKK037247.1:417194..417772 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR006687Small_GTPase_SAR1
IPR024156Small_GTPase_ARF
IPR003579Small_GTPase_Rab_type
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|585103239|gb|EWM22674.1| (1-family small gtpase [Nannochloropsis gaditana])

HSP 1 Score: 391.734 bits (1005), Expect = 6.215e-138
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKLD 193
            MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKLD
Sbjct:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKLD 193          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|299472956|emb|CBN77357.1| (ARFRP1, ARF-like Ras superfamily GTPase [Ectocarpus siliculosus])

HSP 1 Score: 258.07 bits (658), Expect = 6.163e-85
Identity = 117/190 (61.58%), Postives = 155/190 (81.58%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190
            MFSL+AG I+YLFSKTE++VLILGLD+AGKTTLLEQ KGIF+KVQGIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA++AF ++ +  +L  VP+++ ANKQDLP A+S  D++  F++ ++ +    ++  CS LTC+G+  G+ W+V EAK  AR
Sbjct:    1 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITK-VAFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 189          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|673051317|ref|XP_008879619.1| (hypothetical protein H310_13763 [Aphanomyces invadans] >gi|574464648|gb|ETV91693.1| hypothetical protein H310_13763 [Aphanomyces invadans])

HSP 1 Score: 206.068 bits (523), Expect = 2.145e-64
Identity = 99/190 (52.11%), Postives = 128/190 (67.37%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190
            M SL  G  +YLFSK EVH+LI+GLD+AGKTTLLEQ K +F K  GIP +KI PTVGLN+ K+DI    VI WDLGGQ R+R+IW KYY ++HGVVFV+D++D  RF+EAK A AS+L H +L DVPVL+ ANK DL  ++   ++    E++R+       +   SALT +G+   V W V   K   R
Sbjct:    1 MISLFWGLWQYLFSKAEVHLLIIGLDYAGKTTLLEQLKTMFGKKAGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYNESHGVVFVVDSSDTARFDEAKAALASMLAHPELSDVPVLVLANKSDLDASMGTAELTARLELNRLAEAHPWTLRPISALTTDGIADAVTWFVSAVKQTGR 190          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|669157722|ref|XP_008614423.1| (hypothetical protein SDRG_10220 [Saprolegnia diclina VS20] >gi|530733779|gb|EQC32021.1| hypothetical protein SDRG_10220 [Saprolegnia diclina VS20])

HSP 1 Score: 204.142 bits (518), Expect = 1.083e-63
Identity = 102/190 (53.68%), Postives = 130/190 (68.42%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190
            MFSLL GF  YLFSK EVH+LI+GLD+AGKTTLLEQ KG F K  GIP +KI PTVGLN+ K+DI    VI WDLGGQ R+R+IW KYY+++HG+VFVLDAAD  RF+EA+ A  ++L + +L  +P+LL ANK DL  A     +AE   +  +  H   +  S SAL+ +G+E  V WL+   K   R
Sbjct:    1 MFSLLLGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKGRFGKKPGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEARFDEARSALDTMLANAELDGIPILLLANKNDLADAQDMGVIAECLGVASLPSHHEARAQSISALSMDGVEDAVHWLIGAVKNSDR 190          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|698814202|ref|XP_009840130.1| (hypothetical protein H257_14094 [Aphanomyces astaci] >gi|574104891|gb|ETV70418.1| hypothetical protein H257_14094 [Aphanomyces astaci])

HSP 1 Score: 204.142 bits (518), Expect = 1.373e-63
Identity = 99/190 (52.11%), Postives = 127/190 (66.84%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190
            M SL  G  +YLFSK EVH+LI+GLD+AGKTTLLEQ K +F K  GIP +KI PTVGLN+ K+DI    VI WDLGGQ R+R+IW KYY+++HGVVFV+D++D  RF+EA+ A AS+L H +L DVP+L+ ANK DL  A +  ++    E+DR+           SALT  G+   V W V   K   R
Sbjct:    1 MISLFWGLWQYLFSKAEVHLLIIGLDYAGKTTLLEQLKTMFGKKAGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGVVFVVDSSDPARFDEARAALASMLAHPELSDVPLLVLANKSDLDTAQTSAELTARLELDRLAESHQWTQRPISALTTSGIADAVTWFVSAVKQTDR 190          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|1173943435|gb|OQR92288.1| (ADP-ribosylation factor-related protein [Achlya hypogyna])

HSP 1 Score: 202.986 bits (515), Expect = 3.194e-63
Identity = 101/192 (52.60%), Postives = 132/192 (68.75%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLARKL 192
            MFSLL GF  YLFSK EVH+LI+GLD+AGKTTLLEQ K  F K  GIP +KI PTVGLN+ K+DI+   VI WDLGGQ R+R+IW KYY+++HG+VFVLDAAD  RF EAK+A  ++L + +L  +P+L+ +NK DL  A     V+E+  +  + R     V + SAL+  G+E  V WL++  K   R L
Sbjct:    1 MFSLLMGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKSRFGKKPGIPLDKIPPTVGLNIAKVDIKRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEDRFAEAKVALDTMLANAELEGIPILILSNKTDLAKAKDLPTVSEALGVGAIPRSHETLVQAISALSMTGVEDAVNWLIEAVKNSDRFL 192          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|813149533|ref|XP_012200413.1| (hypothetical protein SPRG_05739 [Saprolegnia parasitica CBS 223.65] >gi|641534938|gb|KDO28868.1| hypothetical protein SPRG_05739 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 202.216 bits (513), Expect = 5.951e-63
Identity = 100/190 (52.63%), Postives = 130/190 (68.42%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190
            MFSLL GF  YLFSK EVH+LI+GLD+AGKTTLLEQ KG F K  GIP +KI PTVGLN+ K+DI    VI WDLGGQ R+R+IW KYY+++HG+VFVLDAAD  RF+EA+ A  ++L + +L  +P+LL ANK DL  A     ++E   +  +  H    + + SAL+ +G+E  V WL+   K   R
Sbjct:    1 MFSLLMGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKGRFGKKPGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEARFDEARSALDTMLANAELDGIPILLLANKNDLADAKDVAVISERLGVGSIPDHHETLLRAISALSMDGVEDAVHWLIGAVKNSDR 190          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|1044597169|ref|XP_017436133.1| (PREDICTED: ADP-ribosylation factor-related protein 1 [Vigna angularis] >gi|1044597171|ref|XP_017436134.1| PREDICTED: ADP-ribosylation factor-related protein 1 [Vigna angularis] >gi|920712214|gb|KOM53463.1| hypothetical protein LR48_Vigan09g212200 [Vigna angularis] >gi|965600243|dbj|BAT87421.1| hypothetical protein VIGAN_05078400 [Vigna angularis var. angularis])

HSP 1 Score: 202.216 bits (513), Expect = 8.872e-63
Identity = 94/183 (51.37%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQ 183
            MFSL  G  KYLFSK E+HVLILG+D AGKTTLLE+ K ++  ++GIPP++I PTVGLN+G++++    ++ WDLGGQ  +RSIW+KYY +AH V+FV+DAA   RFE+AK A   +L HEDL   P+L+ ANKQDLP A+S E++A   ++ + L  RV    + SA    G+     WLV+
Sbjct:    1 MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNIGRIEVTNSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAASPSRFEDAKSALEKVLRHEDLQGAPLLILANKQDLPEAVSAEELARYLDLKK-LDERVYMFEAVSAYDGIGIRESAEWLVE 182          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|951043184|ref|XP_014518312.1| (PREDICTED: ADP-ribosylation factor-related protein 1 [Vigna radiata var. radiata] >gi|951043189|ref|XP_014518313.1| PREDICTED: ADP-ribosylation factor-related protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 201.83 bits (512), Expect = 1.388e-62
Identity = 94/183 (51.37%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQ 183
            MFSL  G  KYLFSK E+HVLILG+D AGKTTLLE+ K ++  ++GIPP++I PTVGLN+G++++    ++ WDLGGQ  +RSIW+KYY +AH V+FV+DAA   RFE+AK A   +L HEDL   P+L+ ANKQDLP A+S E++A   ++ + L  RV    + SA    G+     WLV+
Sbjct:    1 MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSMYSNIEGIPPDRIIPTVGLNIGRIEVTNSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAASPSRFEDAKSALEKVLRHEDLQGAPLLILANKQDLPEAVSAEELARYLDLKK-LDERVYMFEAVSAYDGIGIRESAEWLVE 182          
BLAST of EWM22674.1 vs. NCBI_GenBank
Match: gi|1029005898|ref|XP_016666824.1| (PREDICTED: ADP-ribosylation factor-related protein 1-like [Gossypium hirsutum] >gi|1050575710|ref|XP_017608764.1| PREDICTED: ADP-ribosylation factor-related protein 1-like [Gossypium arboreum] >gi|1050575712|ref|XP_017608765.1| PREDICTED: ADP-ribosylation factor-related protein 1-like [Gossypium arboreum] >gi|728830340|gb|KHG09783.1| ADP-ribosylation factor-related 1 [Gossypium arboreum])

HSP 1 Score: 201.445 bits (511), Expect = 1.927e-62
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = 0
Query:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQ 183
            MFSL  G  KYLFSKTE HVLILG+D AGKTTLLE+ K ++  + G+PP++I PTVGLN+G++ +     + WDLGGQ  +RSIW+KYY +AH V+FV+DAA   RFE++K A   +L HEDL   P+L+ ANKQDL  ALS E++AE  ++ + L  RV    + SA    G++ GV WLV+
Sbjct:    1 MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSVYSNLAGVPPDRIVPTVGLNIGRIGVSNTKFVFWDLGGQPGLRSIWEKYYEEAHAVIFVIDAACPSRFEDSKSALEKVLRHEDLQGAPLLILANKQDLSEALSAEELAEYLDLKK-LDERVYMFEAASAFDGMGIKEGVEWLVE 182          
The following BLAST results are available for this feature:
BLAST of EWM22674.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103239|gb|EWM22674.1|6.215e-138100.001-family small gtpase [Nannochloropsis gaditana][more]
gi|299472956|emb|CBN77357.1|6.163e-8561.58ARFRP1, ARF-like Ras superfamily GTPase [Ectocarpu... [more]
gi|673051317|ref|XP_008879619.1|2.145e-6452.11hypothetical protein H310_13763 [Aphanomyces invad... [more]
gi|669157722|ref|XP_008614423.1|1.083e-6353.68hypothetical protein SDRG_10220 [Saprolegnia dicli... [more]
gi|698814202|ref|XP_009840130.1|1.373e-6352.11hypothetical protein H257_14094 [Aphanomyces astac... [more]
gi|1173943435|gb|OQR92288.1|3.194e-6352.60ADP-ribosylation factor-related protein [Achlya hy... [more]
gi|813149533|ref|XP_012200413.1|5.951e-6352.63hypothetical protein SPRG_05739 [Saprolegnia paras... [more]
gi|1044597169|ref|XP_017436133.1|8.872e-6351.37PREDICTED: ADP-ribosylation factor-related protein... [more]
gi|951043184|ref|XP_014518312.1|1.388e-6251.37PREDICTED: ADP-ribosylation factor-related protein... [more]
gi|1029005898|ref|XP_016666824.1|1.927e-6252.46PREDICTED: ADP-ribosylation factor-related protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8040rna8040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications