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Properties
| Property Name | Value |
|---|
| Product | Poliketide cyclase/dehydrase |
| Orig transcript id | gnl|cribi|Naga_100375g3.1523.mrna |
| Orig protein id | gnl|cribi|Naga_100375g3.1523 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002475.1 | supercontig | CM002475.1:38646..40357 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7873 ID=rna7873|Name=rna7873|organism=Nannochloropsis gaditana|type=mRNA|length=1813bp
AGGCACATAAAAAAGTGCGGCCCGTGTCACGTCCGGCATCACATCCCAAT
TTGACGGCGCTCAAGGTATACAAGGGGCCTCGATTGTGCGCGGAACGAGG
ATTATTACCACTCCATTTCACGGCTTGCGCATGGGCTTTCGTTCGTAACC
CTTGCATCACAGTGATGTTCACCTGATTCTTGACAGACAGCTTGAAGCTT
TCAGAACACCTCGTGATTGCTCCTCACCTGTTCTCACCAACAACAGTTCA
TAAGGTATTTTAAAATCGCGATGATTAATGCTCTCATCTTCCGACTGCGT
GGCCGCTTGTCGCTCGTCCTGACAACTACGACGTCTCGTATAGAGCGGCG
GCGCCTATGCTTTCCTGTACGAGGTTACCCCCGCACGCTCACGACTCTGG
GGAGTCCAGACGACCGGAAAATATATCCACCTTCTACTTCTAGTGTTCCT
CCTACACCAGGGCGCCCTACCGGTGGTGATCCGCTAAAAGACCTGAAGAA
AGTCCACGGCTCCTTTATATCTTCACCTTCAACTATCTCTCATCGAGAAG
AGGTCATGCGGGCTGAAGCCTCTTCTTTCCTCCACGTTTTGGAAGAACAC
GACCCCTCGGCGCCTTGTCCCATGTGTATAAATGGAGACGCGGGCACGTG
CTCCAGCCTTGAGACGCGTGATGAGGCGGTGGACGAGGCGTACGAGCAGG
CGGAAGGTCCTGAGGGCTCCGAGATAGACCGGGAGGAGCGGAAGAGCATA
GTCCAGGCCCGGGCTCGCGACATGGACGACGAAAGGACTCCTTGTGTCAT
TCAAGAGCAGCACCGATTGCAAGAGCAACTCGAGGACGAATCGCAGAGCG
TCAAGGAAGACGAATCGACGTGTTTGGTTGAATCTAAGGAGGTGCGCACT
TCTCAAGCAGGGGGCCACTTCCGACGTGCGGGGCAGCTGCGTGTGACGCG
AGAACCCGGTCCTAGCGATGATACAGAGATGCTGAAAACGGCTGGCTATG
GGTCGCAGGGGGCGCGTGAGAGTGGGAAAGGTTATGGAGACGTCTTTTGG
GAGGGAGGAACTCCAATGTTTTTGACGGAAGACAAAGCCAGAGACATGTT
TGAACACGGAGTAGCGGGGCCGACGGATGCGGCAAAAATCAGGGAGGGTG
AGATTGGTAGGCTAGCCGAGCTCACATGCGATGAGACGCAGGGCTCTCTT
GACCAAAAAGAAGTGCACAGCAAAATTCTGCGCGCATTGAAAGAGGAGGG
AGAGATGGATTCCTTGCGACGTACCAATCACCCCGGAGGACAGCTTGCAA
ACGAGCGTTTCACGCGGTCCAAAGCGAATAGAGTAAGCGACAAGGACACG
GAGAAGCAGGCGATGGATAAGGGTGGCCTAGCAAAAGGCAGAACGGATGA
AGAACCCAGATCGTCGTGAATGTGGAGGAAAAAGTACACGACACGGTGAA
GCTGTGAGGTACTCGGGCGAGGCAGGAATGATTGATTTAAAGATAATGAC
CTGATGAGGCTCATGAATATAATGTGTCCAGCTGCGAAAGAATGCAATAT
CGGCGTTTAGAGAGGCGACCAAAAATTGGTTGACTATTACAAAATCGATA
CATCCTGCGCATGTCTTTTTACTCTGTGTTGAAAGAAACAATCTGAGGCG
AATCGCTAAAAATCATCTAGAGCACGAATGAAGTATCTGCGACCCTGCAC
GATGCAATCCACGAAAGCTACAGCGCACAAGTTGGACAAGCACCTAAAGT
TCTCAAGCCCAGCGCACTTTCAAGAAACGTAAAAGCAACGCAGTGTAGCA
GGCAGGTAATAAT back to topprotein sequence of rna7873 >rna7873-protein ID=rna7873-protein|Name=rna7873|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MASNRNTGCVICNTLRGKILGYRLRMMEDTSLPSSNDKRETGTSLCDIKI
QRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCI
PLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQP
LLQATVILDVYEDQENYTISSFLVENTPAFLKLYEGKWRLLEEEVGGQQV
TRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEEGWEDRVEEE
GAEEGADEGAEEGEVFWDCTDGVDEETTCESPSPSNALSSASGPSSPAAC
TPSSGQPSTGKQSGLARGWALSFFRRVDLRRMGKRGGRGTREGKPVR back to topmRNA from alignment at CM002475.1:38646..40357+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7873 ID=rna7873|Name=rna7873|organism=Nannochloropsis gaditana|type=mRNA|length=1712bp|location=Sequence derived from alignment at CM002475.1:38646..40357+ (Nannochloropsis gaditana)
TAATAATAATTCGAATGGCATCAAACAGAAATACAGGGTGTGTCATCTGT
AATACGCTACGAGGCAAGATTTTAGGGTACCGCCTACGGATGATGGAAGA
TACTTCTCTTCCGAGGTAAGTTATTCTACTTGCCTGGAAAGCTCTTGAGG
ATATTTGGGGGCTGCATTGGGAAAACCTTTCAAATTAATTTTTACATCTA
TGTTATCATATACGTCACCAAAGCGCTTACTGCATTTAAGAGCACGAAAT
ATTGCAAGGCAATAGTTAAAACTTCCGGTTCGCGGTCTTCTAACATttcg
ctctcttttcctGTCACCTCCAGTAGCAATGACAAGCGCGAAACTGGCAC
ATCATTATGCGACATCAAGATTCAACGTGCACCTGCACCTCACAGAGCAT
CGACCCGCTTAATCACCGCCTCTCTGCTCGTCCTCCGACCTCGGGCATCC
GTTTTCCGTCTCCTCACCGCTTACGATCGCCTCGCCCGTTACCTCCCCAA
TTGCTCTCACAGCCAGTGcatcccgctccctcctggcGCAACGGCATCGG
TGCGCATCACCCAAACCGCTGTTGAGACGTTCCCGTTCTGCGAAGTCAAA
GCCAAGCCCACCTCTGCACCaccgccttcgtcctcctccttcttctcctc
cctcacctctttTGTTCAACCTTTGCTCCAAGCAACCGTCATTCTCGACG
TTTACGAGGATCAAGAGAACTACACTATCAGCTCCTTCCTTGTGGAAAAC
ACCCCAGCCTTCCTGAAGCTTTATGAAGGGAAATGGCGtctgctggaaga
ggaagtgggcgGGCAGCAGGTGACCCGGATGTGCTACGAAGCGACTTTCA
GGCCGAGGGTGCTGGTACCATTGATGGCGGTGGAGtggaagatgaagaga
gaTGTCGCCGTAAACTTGCACGCCTTGAAAcgagcggcggaggaagggtg
ggaggaccgggtggaggaggagggagcggaggagggagcggatgagggag
cagaggagggggaggtcttCTGGGATTGCACAGacggcgtggacgaggaa
acGACTTGTGAGAGCCCTTCCCCATCGAATGCGCTGTCGTCGGCATCAGG
ACCGTCATCACCCGCGGCATGTACCCCCTCCTCGGGACAACCCAGCACCG
GAAAGCAGTCAGGGCTCGCGAGAGGGTgggccctttccttcttccgaCGC
GTCGACCTTCGTCggatggggaagagaggaggacgtgggacgagagaggg
gaaaccGGTCCGATGAAGGAGCACGCAAGATGCGCCGGAATGTGGATAGA
AGATAATTCATGACGTTTCGACCGAGCTTGTCTCGAAGTGCCGCTCCGTT
CGGGCTCGTggaaaggagagcaaggagtATGCTGTGAGGATAAGGACGTC
GAGAgagacgagaaagaggaaagggctCACAAAACCGATGAGTTTCATTT
GTAGCTCAAGATAAGGTGCGGACAGGTACGCCACCGGTGGCTTCGTATCA
AAGAAGAAAGCCTCGAGAAAGTCGATGCATACGCCTATCGCGGTGGTCCC
ACACCTGCGGGTGGAAGTAAGGACAGCGATTGCTTCCCTCACAGCGattg
cttccctcctcgtcatggACAAAGGAAAGCATTAAATGAAATATAAGTGC
GCGATAACCGCCACGCCGTGACATCGCTCGGCGGAGAAGCAAAGCAACAA
ACGAGACAAAGC back to topCoding sequence (CDS) from alignment at CM002475.1:38646..40357+ >rna7873 ID=rna7873|Name=rna7873|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002475.1:38646..40357+ (Nannochloropsis gaditana)
ATGGCATCAAACAGAAATACAGGGTGTGTCATCTGTAATACGCTACGAGG
CAAGATTTTAGGGTACCGCCTACGGATGATGGAAGATACTTCTCTTCCGA
GTAGCAATGACAAGCGCGAAACTGGCACATCATTATGCGACATCAAGATT
CAACGTGCACCTGCACCTCACAGAGCATCGACCCGCTTAATCACCGCCTC
TCTGCTCGTCCTCCGACCTCGGGCATCCGTTTTCCGTCTCCTCACCGCTT
ACGATCGCCTCGCCCGTTACCTCCCCAATTGCTCTCACAGCCAGTGcatc
ccgctccctcctggcGCAACGGCATCGGTGCGCATCACCCAAACCGCTGT
TGAGACGTTCCCGTTCTGCGAAGTCAAAGCCAAGCCCACCTCTGCACCac
cgccttcgtcctcctccttcttctcctccctcacctctttTGTTCAACCT
TTGCTCCAAGCAACCGTCATTCTCGACGTTTACGAGGATCAAGAGAACTA
CACTATCAGCTCCTTCCTTGTGGAAAACACCCCAGCCTTCCTGAAGCTTT
ATGAAGGGAAATGGCGtctgctggaagaggaagtgggcgGGCAGCAGGTG
ACCCGGATGTGCTACGAAGCGACTTTCAGGCCGAGGGTGCTGGTACCATT
GATGGCGGTGGAGtggaagatgaagagagaTGTCGCCGTAAACTTGCACG
CCTTGAAAcgagcggcggaggaagggtgggaggaccgggtggaggaggag
ggagcggaggagggagcggatgagggagcagaggagggggaggtcttCTG
GGATTGCACAGacggcgtggacgaggaaacGACTTGTGAGAGCCCTTCCC
CATCGAATGCGCTGTCGTCGGCATCAGGACCGTCATCACCCGCGGCATGT
ACCCCCTCCTCGGGACAACCCAGCACCGGAAAGCAGTCAGGGCTCGCGAG
AGGGTgggccctttccttcttccgaCGCGTCGACCTTCGTCggatgggga
agagaggaggacgtgggacgagagaggggaaaccGGTCCGATGAATGGCA
TCAAACAGAAATACAGGGTGTGTCATCTGTAATACGCTACGAGGCAAGAT
TTTAGGGTACCGCCTACGGATGATGGAAGATACTTCTCTTCCGAGTAGCA
ATGACAAGCGCGAAACTGGCACATCATTATGCGACATCAAGATTCAACGT
GCACCTGCACCTCACAGAGCATCGACCCGCTTAATCACCGCCTCTCTGCT
CGTCCTCCGACCTCGGGCATCCGTTTTCCGTCTCCTCACCGCTTACGATC
GCCTCGCCCGTTACCTCCCCAATTGCTCTCACAGCCAGTGcatcccgctc
cctcctggcGCAACGGCATCGGTGCGCATCACCCAAACCGCTGTTGAGAC
GTTCCCGTTCTGCGAAGTCAAAGCCAAGCCCACCTCTGCACCaccgcctt
cgtcctcctccttcttctcctccctcacctctttTGTTCAACCTTTGCTC
CAAGCAACCGTCATTCTCGACGTTTACGAGGATCAAGAGAACTACACTAT
CAGCTCCTTCCTTGTGGAAAACACCCCAGCCTTCCTGAAGCTTTATGAAG
GGAAATGGCGtctgctggaagaggaagtgggcgGGCAGCAGGTGACCCGG
ATGTGCTACGAAGCGACTTTCAGGCCGAGGGTGCTGGTACCATTGATGGC
GGTGGAGtggaagatgaagagagaTGTCGCCGTAAACTTGCACGCCTTGA
AAcgagcggcggaggaagggtgggaggaccgggtggaggaggagggagcg
gaggagggagcggatgagggagcagaggagggggaggtcttCTGGGATTG
CACAGacggcgtggacgaggaaacGACTTGTGAGAGCCCTTCCCCATCGA
ATGCGCTGTCGTCGGCATCAGGACCGTCATCACCCGCGGCATGTACCCCC
TCCTCGGGACAACCCAGCACCGGAAAGCAGTCAGGGCTCGCGAGAGGGTg
ggccctttccttcttccgaCGCGTCGACCTTCGTCggatggggaagagag
gaggacgtgggacgagagaggggaaaccGGTCCGATGA back to top
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