EWM22819.1, cds7851 (CDS) Nannochloropsis gaditana

Overview
NameEWM22819.1
Unique Namecds7851
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002475.1:38660..38760 +
Alignment locationCM002475.1:38969..39911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22819.1
ProductPoliketide cyclase/dehydrase
Orig transcript idgnl|cribi|Naga_100375g3.1523.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:38660..38760 +
CM002475.1supercontigCM002475.1:38969..39911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR005031Polyket_cyc
Homology
BLAST of EWM22819.1 vs. NCBI_GenBank
Match: gi|585103451|gb|EWM22819.1| (Poliketide cyclase/dehydrase [Nannochloropsis gaditana])

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query:    1 MASNRNTGCVICNTLRGKILGYRLRMMEDTSLPSSNDKRETGTSLCDIKIQRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYEDQENYTISSFLVENTPAFLKLYEGKWRLLEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEEGWEDRVEEEGAEEGADEGAEEGEVFWDCTDGVDEETTCESPSPSNALSSASGPSSPAACTPSSGQPSTGKQSGLARGWALSFFRRVDLRRMGKRGGRGTREGKPVR 347
            MASNRNTGCVICNTLRGKILGYRLRMMEDTSLPSSNDKRETGTSLCDIKIQRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYEDQENYTISSFLVENTPAFLKLYEGKWRLLEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEEGWEDRVEEEGAEEGADEGAEEGEVFWDCTDGVDEETTCESPSPSNALSSASGPSSPAACTPSSGQPSTGKQSGLARGWALSFFRRVDLRRMGKRGGRGTREGKPVR
Sbjct:    1 MASNRNTGCVICNTLRGKILGYRLRMMEDTSLPSSNDKRETGTSLCDIKIQRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYEDQENYTISSFLVENTPAFLKLYEGKWRLLEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEEGWEDRVEEEGAEEGADEGAEEGEVFWDCTDGVDEETTCESPSPSNALSSASGPSSPAACTPSSGQPSTGKQSGLARGWALSFFRRVDLRRMGKRGGRGTREGKPVR 347          
BLAST of EWM22819.1 vs. NCBI_GenBank
Match: gi|585109050|gb|EWM26918.1| (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 72.4034 bits (176), Expect = 2.402e-10
Identity = 58/198 (29.29%), Postives = 96/198 (48.48%), Query Frame = 0
Query:   59 ASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATA-----SVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYEDQE--NYTISSFLVENTPAFLKLYEGKWRL--------LEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEE 241
            A+ R I++S++V RP + V+++LT Y+ L+ Y+PN + S+ +  PPG  A      VR+ Q   +T      KA               SLT  ++ + +A       ED++     I   LV++  A    + G+WRL          E       T++ Y    +P+  VP+ A+EW++K DV  NL A+K A+E+
Sbjct:  221 ANVRRISSSIVVNRPLSDVWKILTDYNNLSEYVPNLTQSRLVATPPGWEARGKNKEVRLFQEGAQTIVGFNFKA---------------SLTMDMEEVFEA-------EDEKLGQRRIKFRLVDS--AMFSDFSGEWRLQCYSRMRTACENEEWTYSTKLFYMVNVKPKGPVPVGALEWRIKEDVPTNLRAVKVASEK 394          
BLAST of EWM22819.1 vs. NCBI_GenBank
Match: gi|1189388856|gb|OSX75863.1| (hypothetical protein BU14_0218s0029 [Porphyra umbilicalis])

HSP 1 Score: 63.1586 bits (152), Expect = 9.567e-8
Identity = 57/204 (27.94%), Postives = 95/204 (46.57%), Query Frame = 0
Query:   41 TGTSLCDIKIQRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYE----DQENYTISSFLVENTPAFLKLYEGKWRLLEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAE 240
            +GT   D+ I  APA ++   R I +++L+     +V+  LT Y RL+ ++PN ++S+    P G    +R+ Q  V+     + K                           A V+LD+ E    D +   I  F++ ++  F   + G WR+   E GG   T + Y+   +P+ LVP+ AVEW++K DV  NL A++   E
Sbjct:   94 SGTRRPDVAIS-APAWNK---RTIRSAILIRASLPTVWSALTDYSRLSTFIPNLAYSKQRFHPTGG---IRLEQWGVQRIVGFQFK---------------------------AAVVLDMTEVTATDSKERAI-DFVLASSRDFAAFF-GTWRMSAVEGGG---TWLEYDVNIQPKGLVPVKAVEWRIKEDVPSNLLAVRSYCE 258          
BLAST of EWM22819.1 vs. NCBI_GenBank
Match: gi|938301068|gb|KPQ34613.1| (Polyketide cyclase / dehydrase and lipid transport [Phormidesmis priestleyi Ana])

HSP 1 Score: 60.4622 bits (145), Expect = 2.999e-7
Identity = 51/222 (22.97%), Postives = 99/222 (44.59%), Query Frame = 0
Query:   22 YRLRMMEDTSLPSSNDKRETGTSLCDIKIQRAPAPHRASTRLITASLLVLRPRASVFRLLTAYDRLARYLPNCSHSQCIPLPPGATASVRITQTAVETFPFCEVKAKPTSAPPPSSSSFFSSLTSFVQPLLQATVILDVYEDQENYTISSFLVENTPAFLKLYEGKWRL--LEEEVGGQQVTRMCYEATFRPRVLVPLMAVEWKMKRDVAVNLHALKRAAEE 241
            + L  +ED+S  ++ + R    +  +I  ++ PA  R     I A++ + +P   V++++T Y+RLA ++PN + S+ +    G     +I       F FC                              A V+LD+ E+   Y +   + E      K +EG W+L    +E  GQ +T++ Y+ + +P   +P   +E  +  ++ +NL A+++ A E
Sbjct:    4 HTLSPIEDSSRQATANSRTNDNAYVEISTEKRPAKERR----ILATITIPQPIEQVWQVITDYERLADFVPNLTSSKLVSNSEGRIRLEQIGSQCFLKFKFC------------------------------ARVVLDMTENFP-YELGFAMKEGD---FKQFEGAWKLQSTTDEQSGQPITQLSYDLSVKPPRAMPATLIEHHICHNLTLNLLAIRQRALE 187          
The following BLAST results are available for this feature:
BLAST of EWM22819.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103451|gb|EWM22819.1|0.000e+0100.00Poliketide cyclase/dehydrase [Nannochloropsis gadi... [more]
gi|585109050|gb|EWM26918.1|2.402e-1029.29START-like domain protein [Nannochloropsis gaditan... [more]
gi|1189388856|gb|OSX75863.1|9.567e-827.94hypothetical protein BU14_0218s0029 [Porphyra umbi... [more]
gi|938301068|gb|KPQ34613.1|2.999e-722.97Polyketide cyclase / dehydrase and lipid transport... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7873rna7873Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications