|
Properties
Property Name | Value |
Product | rna-binding protein nova-2 |
Orig transcript id | gnl|cribi|Naga_100471g1.2042.mrna |
Orig protein id | gnl|cribi|Naga_100471g1.2042 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002475.1 | supercontig | CM002475.1:14914..17375 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7864 ID=rna7864|Name=rna7864|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp TCGTGTCCCAAGGGCGTACACCACCACACCGCGCACCCGTGCATTTACAC ATTTCTGACCACAAACAGCCAGCCGTGACAGAAGAGGACATGTAGCGGCG TAGTGGACAACTCCGCAGTGCGAATGGGGCCAGAAAGAGAGAATGCTGCC CGGAGACTCTCTTCACGCGCTCCGCCTCCTCTTACGTTCATGTTGCCGTC ACCTCCCGCCTTCGTCTGGCCACCCTCGCAGCATTTTTCACTCCTGAAGT CGCCCTGGCGTCCACCTGCCTCATTAATATCACTTTTGCCACTCATTCTC GGCACGCTTATCCAGTGTCCATTGGACGTTGACTTGTGCTTCTCGTCCCG AGCAAACGCCGTCCCCGTCAGCACTGCATCGACCACGGAAACACTTTTAT CGGGTCGTCTCTTTCACAGCGGCACCGATGAGAAAGGGAGCGGTAGGACG GATTTTAAGACATCTTTATCAATAAGAGATGTCGCAATCGGCAGTGCGGG CTCACCTGGAACACCGCATTTTGCTGCTTCATCCTCACTCTCGTCCCTGC CAAGCATCGTGGTTAAAGGAACCTCGTCACCTGTCACTCGCCCAGCACAG TCTGGAATTCCAGCTCTACAGTCCCTTTGCGGCAGTACTGGCGCTTCTTC GGCTACAAGGTCGTCGTTGCTATATTCCTCGTTGCGTGTCATAGGTCAGG GAGCCTCGGGCATCACGTACGTCCTTCCTGCCGACAGCTACGACTCCGAT ATCACGCTCCCGGGACTTGACATGCAAGAACTGGGTAATAATAAGGATGT GGTGCTCAAAATAGGCACAGGAGATGCGGCTGTGAAGGCTCTGCGGAACG AGGCCTCTCTGCTCCAACGGCTGGCAGACCGCGGCGTCGGGAAGGGGGTA GAGCAGCTGGTAGGATTCGCTGAGTGCCAGATCTCTGCGGACGGGGAGCC ATTGCATGCTCGCTATGAGAACGATGCAGACAAGGGTAGCGGCGAGAGCA GCATCCTTCGCCCTGGCAGACAGGCGCGGAGCATGCCTGGGAAGGTCGAG CAGAGGGCTGTGTTAGCAATGCAACCGTACTGGCCCCAGGCCGAGCAAGT GGATCGGATTCAGGGTACGGAGGGTGTAAGGGAGCTTGTTCGCTTGCTGA TCAGGGATGTCGCAGTGCAAGGTGGCGTCGTTGTGAGTGATGTACAGGTG CTGGAGTCCGGGGTGGGGGAGGAACCGGCAGCAGATGGGAACCATGGCAC TTTCTTATTGATAGATCTCACAGAGGGGATGGTGTTGGTGGAAAACATCG AAGAGAGTCCAGCCGAAAAGAGCCCTGTTGCCAATGCAGCCCTCCGATCA TTTCTTGGGGAGGTTGCTTCTTTGGTCGCATACACAGCCGAGGCTCACAC AGCGGCTGTTGAGGAGTCGAAAACATGGGGTATGCCTGTCCTGTGCGAGC TTGTCAGAGAGGCGTTTCCAATGGCAGCGGAAGAACTTTAAAGGGGTAGG ACAGCAACGCACGAGGCTTGAATATGCCCTTTGCTAGGCCGTTCAGGTCC ACAGAATGTGCTTCAAAGCCAAGATGGAGGTATAAAAATGCTCAACACAA GGGTGTCTTATGGTGAGAACTCCGGCTCATGATCTCAGCATTCTTCAGGC AAAGTAATGCACACGCTGACCGACATCTGTCACGAGAAGC back to topprotein sequence of rna7864 >rna7864-protein ID=rna7864-protein|Name=rna7864|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp MCDAAKSQKKEGEEKEMIAGEEEKVMAEEEQEETEEEKREEEKKEEPGTE QDRKAEKEESSRHASSRWSSRPAEAETPGAKRPLGEPDLREERRRRRFSG QGEQDESSYTLTILVPNEAMGLLIGRAGATRQEIVSRADNVRLKVQDYKD MGEGCYDRGITLSGSWEKVAKAQVLILQKLIDRRNSIIREGNLEDTLFAG PDPRVTVKWCIPLELGGALIGKRGATLAHISSESGARIRLGHEEELPPSR HQKRAVYVTGRKAERDKALALIREKVGGHYFGLLGQGFSPDAVVVKVPVR AVGMLMGPKGARMRELRETTGARVMLAKVGGQ back to topmRNA from alignment at CM002475.1:14914..17375+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7864 ID=rna7864|Name=rna7864|organism=Nannochloropsis gaditana|type=mRNA|length=2462bp|location=Sequence derived from alignment at CM002475.1:14914..17375+ (Nannochloropsis gaditana) ATGTGCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagat
gatcgcgggggaggaagagaaggtaatggcggaggaggaacaggaggaga
cggaggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAA
CAGGATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCG
GTGGTCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTC
TGGGGGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGA
CAGGGGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAA
TGAGGCCATGGGCTTGCTGATTGGGCGAGGtacgtgcaggagggaggggg
aaagaagcggtGGAGTAACCCTAACCGAGGCACGGTCTGATGGTGGCCTA
TGGGAGTTGTGGGGTCGGGGGCGCGCAGTCGGGCcccgggcagggaggcc
gcGTGACGCCTGTTAGAGCACGCCTGATCacgctctgcctccctccctcc
ctccctccttcctctgatCCGTCCATGCGTCctttgccccccgcccccga
caGCCGGGGCCACGCGTCAGGAGATTGTGAGCCGCGCGGACAACGTGCGG
CTGAAGGTGCAGGACTACAAGGACATGGGCGAAGGCTGTTACGACAGAGG
CATCACCCTGAGCGGGTCCTGGGAGGTAGGCGGGGgcaggtggacgaggg
agggggggggggagcggtgGTACATGGGGATACGACGCTTGAGCGGCGGG
GCTGGCCTTCGCACCcggtggaggccctggcgcccCGAGCTCGGGCGGTT
CACCGCCGTGTCTGCCCCCTCCAGCATGTCTCCACCCTCTTATATATACA
TCTATCCCATGCTTACTTTTATCAAAATGTGTGGATCTGAGACTCCACGC
CCATTCACGGATCACTCCCGCACTTCTCCTCTTCGGTTCTCAAACCCATT
GCCCCGCGGCgtttccatccctctcctcctcctctcccgtccaCTCCCTG
CGTGCGACACCATCCTCATCCCCGTtatgccttcccccccccttgtgaac
cccatccccccccctacgCTCTTCCTTGGGCGGTATGGCTCGCGTAGAAG
GTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACGAAA
CAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGGTACGC
TACGCACTCATTCAcgtccccaccttccttgaCCAACCCCCCCTGCGCTC
TCTCCCACTCGCAGCCCCTTCACCCATGcccgccgcctctcctctGACCT
AAATTCCCGATACACCCCTCGACtgtcccctctctctccctcgctccctc
ccctcctgaaGCCTGGGGCTAGGCTgccattcctttcccccttgtcctcc
gctcTATTCCGCCTGCTTTCGCTGCACACGAGGGCGTCACGCGTCTTTCC
CCACAGTCTCACACACCCTCGatcccctctccacgctcATGCCatatccc
tcctccgcgcgtCATGCGCACCTCaagacctctccctccaacaaccctct
ccctcccccccgccccttccactctctctcaccctcctccaggcccagAT
CCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGTGCCCT
CATCGGTAGGGATGACCGgagtggggggaggcgagggtaggagggacaGC
GCGAGGTAGATTGAAGGGTGGTGTAGACAGTCTTGCCGGTGCGGGGACTT
GTGTCGCTTTCTGAGCAGTACCAGGCGAGTGTTCACTCGGCTAGGTTTTG
GCAAGCATTGACacatctctctccctcgttcctttctctttccctctttc
cctctctccctccctccctccctcccttgcttgcTTCCAGGCAAACGGGG
TGCCACCCTTGCGCACATCAGCAGCGAGTCGGGCGCTCGCATTCGCCTCG
gccacgaggaggagcttcctcccagccgcCATCAGAAGCGAGCAGTCTAC
GTAACGGGCCGGAAGGCCGAGCGAGACAAGGCTCTGGCCCTCATTCGAGA
GAAGGTGCGCGTCTTGCTCGATCATTATTTAGACCGTTCTCGTGATACTT
TGACCCAAAATAAGAGGCTGCACGACGCGGCGCGTGCTTGAAAAGTTCCC
TCACTgcctgctctccctcgtAACTCCACCGTCCTCttacctttcctccc
ccccctctctcccgccctcccccccgccttcactCTAGGTGGGCGGGCAC
TACTTCGGCCTGCTCGGCCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAA
GGTGCCGGTGCGCGCTGTGGGGATGCTCATGGGCCCCAAAGGCGCGCGGA
TGCGGGAACTGCGGGAGACGACGGGCGCTCGCGTCATGTTGGCCAAGGTA
GGGGGACagtaa back to topCoding sequence (CDS) from alignment at CM002475.1:14914..17375+ >rna7864 ID=rna7864|Name=rna7864|organism=Nannochloropsis gaditana|type=CDS|length=5994bp|location=Sequence derived from alignment at CM002475.1:14914..17375+ (Nannochloropsis gaditana) ATGTGCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagat gatcgcgggggaggaagagaaggtaatggcggaggaggaacaggaggaga cggaggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAA CAGGATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCG GTGGTCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTC TGGGGGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGA CAGGGGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAA TGAGGCCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGA TTGTGAGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGAC ATGGGCGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGA GAAGGTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGAC GAAACAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgc ccagATCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGG TGCCCTCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGT CGGGCGCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgc CATCAGAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAA GGCTCTGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGC TCGGCCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGC GCTGTGGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCG GGAGACGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaaA TGTGCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagatg atcgcgggggaggaagagaaggtaatggcggaggaggaacaggaggagac ggaggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAAC AGGATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCGG TGGTCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTCT GGGGGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGAC AGGGGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAAT GAGGCCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGAT TGTGAGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGACA TGGGCGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGAG AAGGTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACG AAACAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgcc cagATCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGT GCCCTCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGTC GGGCGCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgcC ATCAGAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAAG GCTCTGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGCT CGGCCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGCG CTGTGGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCGG GAGACGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaaAT GTGCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagatga tcgcgggggaggaagagaaggtaatggcggaggaggaacaggaggagacg gaggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAACA GGATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCGGT GGTCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTCTG GGGGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGACA GGGGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAATG AGGCCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGATT GTGAGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGACAT GGGCGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGAGA AGGTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACGA AACAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgccc agATCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGTG CCCTCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGTCG GGCGCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgcCA TCAGAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAAGG CTCTGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGCTC GGCCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGCGC TGTGGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCGGG AGACGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaaATG TGCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagatgat cgcgggggaggaagagaaggtaatggcggaggaggaacaggaggagacgg aggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAACAG GATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCGGTG GTCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTCTGG GGGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGACAG GGGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAATGA GGCCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGATTG TGAGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGACATG GGCGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGAGAA GGTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACGAA ACAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgccca gATCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGTGC CCTCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGTCGG GCGCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgcCAT CAGAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAAGGC TCTGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGCTCG GCCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGCGCT GTGGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCGGGA GACGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaaATGT GCGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagatgatc gcgggggaggaagagaaggtaatggcggaggaggaacaggaggagacgga ggaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAACAGG ATCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCGGTGG TCCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTCTGGG GGAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGACAGG GGGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAATGAG GCCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGATTGT GAGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGACATGG GCGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGAGAAG GTGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACGAAA CAGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgcccag ATCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGTGCC CTCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGTCGGG CGCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgcCATC AGAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAAGGCT CTGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGCTCGG CCAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGCGCTG TGGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCGGGAG ACGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaaATGTG CGATGCGGCGAAGAGccaaaagaaggaaggagaagagaaggagatgatcg cgggggaggaagagaaggtaatggcggaggaggaacaggaggagacggag gaggagaaaagagaggaggagaaaaaggaggagccggGTACTGAACAGGA TCGGAAGgctgaaaaagaggaaagttCCCGTCATGCCTCGTCGCGGTGGT CCTCGAGGCCTGCCGAGGCGGAGACACCGGGCGCTAAGCGGCCTCTGGGG GAGCCGGACTTGCGCGAGGAGCGGCGTCGGAGGCGCTTCTCGGGACAGGG GGAACAGGACGAGAGCTCCTACACGCTGACGATCTTGGTCCCGAATGAGG CCATGGGCTTGCTGATTGGGCGAGCCGGGGCCACGCGTCAGGAGATTGTG AGCCGCGCGGACAACGTGCGGCTGAAGGTGCAGGACTACAAGGACATGGG CGAAGGCTGTTACGACAGAGGCATCACCCTGAGCGGGTCCTGGGAGAAGG TGGCCAAGGCTCAAGTTCTCATCCTGCAGAAGCTAATTGACCGACGAAAC AGCATCATTCGGGAGGGCAATCTGGAAGACACTCTTTTCGCCGgcccagA TCCTCGCGTCACGGTCAAATGGTGCATTCCGCTCGAGCTGGGCGGTGCCC TCATCGGCAAACGGGGTGCCACCCTTGCGCACATCAGCAGCGAGTCGGGC GCTCGCATTCGCCTCGgccacgaggaggagcttcctcccagccgcCATCA GAAGCGAGCAGTCTACGTAACGGGCCGGAAGGCCGAGCGAGACAAGGCTC TGGCCCTCATTCGAGAGAAGGTGGGCGGGCACTACTTCGGCCTGCTCGGC CAGGGCTTCAGTCCGGACGCAGTAGTGGTAAAGGTGCCGGTGCGCGCTGT GGGGATGCTCATGGGCCCCAAAGGCGCGCGGATGCGGGAACTGCGGGAGA CGACGGGCGCTCGCGTCATGTTGGCCAAGGTAGGGGGACagtaa back to top
|