rna7741, rna7741 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7741
Unique Name	rna7741
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1952
Alignment location	CM002473.1:224914..227492 +

Link to JBrowse

Properties


Property Name	Value
Product	myb-like protein
Orig transcript id	gnl\|cribi\|Naga_100396g1.7450.mrna
Orig protein id	gnl\|cribi\|Naga_100396g1.7450
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:224914..227492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100396g1	gene7496	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7741	rna7741-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22952.1	cds7720	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:224914..227492+
coding sequence from alignment at CM002473.1:224914..227492+

mRNA sequence

>rna7741 ID=rna7741|Name=rna7741|organism=Nannochloropsis gaditana|type=mRNA|length=1952bp
CCCAGGAGTCACCGCAACTAAAAACTGAGTTCTCGAAGTCTAAATATTCT
TATCAATGTTCTTCTCAGGTGATATAGGCCAGTGGACTAGGATAAACAAC
GGGGCGTGTGTATCGCAGGGGCGTCTCATTAAACCCACAATTGACTTGCT
CATCACGCTGAGGGATCGCACCGGGAGCGGCCGGGAGAGCTCTCGGTAAG
ATTACGCAAAGGGTATTTCCTCATCATCTGGGCATTGACTCTTCATTAAA
GTGTAGACTTAGATAAGAATGCTTGGAATATGGTCTTCCTAAAAAGGGGG
ATACGCCAAGTTTTTAGAAAGTAATGTTCAGGGTTTTTGTCTCACGGTTA
CGCAGGTCTTTCACCTCTGGAAACGTCTTCAAGTTTGGTCGGCACTCTTT
CCACCGGAACATCCAACCATATTTTCATTACAATAAACAGGTTGTTAGCG
GCATTGTCTCCATGTCTCTAGACGCTGGAGGCTGCGGACGAAAGGCTCGG
ACTCCATCACCGCACGAGCATCACTTCAAGGACCTGCGCATCGATACAAC
CTGCCTTTTCCCGGACCAATTCGACGCATTTCTATCCACTTCTGATCAGT
ACCAAAGCGCTGAAGTATCAACTCCTACAACGCCCAACGCTACGGGTGCT
GGCCGGGTAAACTTCGACGAAACAGGCGCAACGACCAATCCGAGCTTCGC
GTCGACGAGCTCGGGGCAACAATACAAGACAGCCTGCCATGTGGTGGGAT
ACGCCCCAGAGGGAACAGCTAGCCGGTGCCGGGTCTGTGGAAGTGGCTTT
GAGCCTCACGGGCTGCGGTTTGGTACGTTTTTTTCCCACGCCCAGGGCTT
CATTTTCCTACGCTGGCATCATTTGCCTTGCCTTCGTCCGCCCTCCAGCC
TAGAGGACATTACGACCCTCTCCGGCCACTGTAATTTGTCGCAAGATGAT
GTTAAGGTGGTGCAAGGCTGGATAGATGGCAATGGTGTCGCACCGGCCTC
CTTGCCTCTGTCCCCTTTTTCCGCTTTTCGAAGTAGCCCATCCTTCGCCG
ACTCGGATCGAGAGAACAAAATACCGGAGTGGCAGACATTAGGGAGTATC
AACGATGATCTGTGCAGCAGCGACACAAGCATCAATAGTAATATGAATGG
AAATGAGTGGGAGAGCCGTCCTCGGGGCATACGGCCCGGCCAAGCCTCGC
CTCTCTCGCCTCCGCTGGTCTGGCCACTTCAAGACCGAATCGTGGAATTA
GCTGACACTTCAACGCTGTCGACACCATCACATTCGAGTGGATGCCTAGG
TGTTATCGCTAATCAAAGTACTAGTTCTTTCATACCCATCTCGTCTCCTG
TTGAAAGTCTATTGATCAGAAAAAACAGCGAGAGAGAAAGAGGGGCACAG
GAATTATCCCATGCCGGGCTTTTCTCTACGTCCCCACCGCGAAGTGACTA
CATGATCGACCGCAACCTTCCCTCCCCACGTGAGATGAGTCGAAGCCGTG
GCACGAAGTTCCGGGCGGAAACTCCCATCTTCAGCCTGACTGGCAAAAAT
AACCTGAAAGTGGGCGAGAGCGTGGAACTGACGGCACAAGAGGAAATGGC
GAAAGCGGAGTCCGAAATGCTTCGACAAACTGCCAAAATCGAAAGGCACC
GAAGGCAGAGCAGAACGATTTGAGAAATCCTCTATCTTGCATGTACTCGA
TGGAAATGAAAGTTTGAATTCGTGCCTAATGTGCCAAATGCGGTACACAT
AAATACAGGAGAGAAATAACACGTGCTTTTGAGAAGCCAGGATATGTTTA
CTGCAAGCTTTCATTGTTCATGCAGCTGAAATGATTAAAATTGCAATAGA
AAAAATTACAAACGAAACAACAAACAACAAACGGAATACTTGCATGGTGT
AAGAAAACGGTAAAATTCAGCTTCCTAGACAAAACGTGCGAATCCCTCCT
CT

protein sequence of rna7741

>rna7741-protein ID=rna7741-protein|Name=rna7741|organism=Nannochloropsis gaditana|type=polypeptide|length=457bp
MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSAD
LQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAI
QCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLG
KQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRP
ENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDD
ILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL
RQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSS
TSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRE
LLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAV
RRGLFVS

mRNA from alignment at CM002473.1:224914..227492+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7741 ID=rna7741|Name=rna7741|organism=Nannochloropsis gaditana|type=mRNA|length=2579bp|location=Sequence derived from alignment at CM002473.1:224914..227492+ (Nannochloropsis gaditana)
AGTGCTAGATGCGTCCACATATCCATTTTGTAAACTACAACTTCTTATGA
ACTCATGTACAAATCTGCAACCACTGCGTTTGTGGCAAATCTGTTTTGAT
CATAAGGTGCGGCCTTCCATGTGCGACTCCACTTCTACTACCAAAGCTTC
GTCAGCGTCCTCCATTATAGTCTCAATGAACGATGAAGACGACTACCTTT
CAGACAACAGCAGCTGCGACAGTCGCATGGAAAAAGAAATGGATGCAGCC
AACATGCTATCCTCCCTTAGAATGGTAAGTACTTAGATGAAATGTAACTT
TTTCTTTGTCCATCGACGGCGAGCCTCATCGCAATTCCGTTGTACATTCC
TCACCAAGAGAAGGACCTCCATCTATAGTTTAAAGTGAATATCAATTGTT
TGTTTCTTCGCTCAGCGACTTTACTAGCATCTCTGTCCCAAGATGTATCC
TGTGTTCGCACGCTGTTGCTGAAGCTCACAAAGTCCAACGAGCAGAGCCC
CTTTTACTCATAAGTTATCTTCCTGCGCCGATTCTGGAGCCCGTTCCTCA
TCATTAAATACCTATACTCTTTCCTTCAATACTTAATCAGCTCACTCCGC
GCAAGCTGAATGAAGAGTCGCtccgccctgctccctctgGGGCTGGTGAT
AGGCAGAGCAAATGGCCCGCGGCGCACAGGCCTCCCGCATCTTCGACTGC
GACCCTCTGCCCGGCGGCGACGCTCAAGCGAGAAATGAGTATGGCAAGTA
CAACTAGTGCCAGTAGTCTAaatagcagcagcagcaataaCAGTGACAGC
AACAACGTGAAGGCTGGGCTCTGCAGCACCATTGAGAGCATGGGCCCGGG
GTCGGGGAGCGACATGGAGACTAAATCAGCGGATCTTCAGTCCATTCACC
CCACTGCCTTCAAACCTGGCGGAAAATGGACAAGCAAAGAAGACGAGCAA
CTTCGAAAGGGAGTGACAGCGGTTGGAGAGTGCAACTGGGACACAATATC
GACGCAGTTTCTGCACTCGCAACGCTCGGCCATCCAATGCTCGCATCGGT
GGCAAAAAGTTTTGCGTCCAGGCCTTGTCAAAGGGCCCTGGAcacaagaa
gaggacgatatCATAGTCGTATGTCGGCAGAACGGGGTGACCGAGTGGAA
AGAGATCGCCCTCCGCTTAGAAGGGAGGCTAGGGAAGCAGTGCCGAGACC
GGTGGTTGAACCACTTGGACCCGGCCATCAGCAAGCACTActggacggag
gaagaggacaaggtcCTTGCCGAAGGCCGCAGGCTTTACGGGAACGCCTG
GGCGAAAATAGCCAAGCTTCTTCCAGGAAGGTACGTGTGCTCCTCAAGGT
CTGGGTAGAGGGGGATCATCAAGTCCTGGCGACTTGGCATGGTAGTATGC
ATGACTGTCTTACCCCAAAGAAAGATCCGTCACTTTCCAGACTCACATGG
TTTTTTAATATCTCAGGCCGGAGAATTCTATCAAAAATCGCTGGTATAGC
GCACGCCGGGCTCAAGAGCGCTCCTTCGTTGCCCCGCCACGCTGGGACCT
GAAATTTGAAAAGAAAGTTATCAGCGATTTTTGCGCTTCGTTtcgcaagg
aggaggttaacgTGGACGACATTCTCGCCCATATCATCGCCGTCCTCCGT
GTCCGGGACCCAGTGGCTTACTCTCCGTCCCTCGCGCACATCAACCGCCA
GAAGCTCCACCGACGCCTCACCGCGGGGCTGAAAAGAGAGGCGGCCAAGT
ATCAACCGGACTCCGACCTCCGGCAGGCCCTGAGGCGCGCCAAGTTGGTA
CAGCAGAAAGGAGGCTCCTGGGAGGGGTTGGCGGCTCGCAGGTTGGCTGC
GGCACCCAATGGGCCCGTGCTTGCCTCCGACACCTCGCAAGGCCcggcca
tcccctcctcgtcctcctccacctcacatcccgccctgcccctttcgGCG
TCgccctgctcttcctctttccacccgcctccccccccgggcgcCGATAC
CCATATGAGCCAGGTCatgatcctcctccaggatgCCTTGCGCGCGGAGA
CAGACTCCGGCCGAAGAGAGCTGCTGCAGCAAGCAGTCTCGGCGACCGTA
CAGTCCAACCGAGCCGCCGTCAACTACGTGGAAGGGATCCTGGGCGGAGG
CTTTGCCAAGCTGGACTTGCAGGACGCGGGGGACAGGGCCAGCCTGGTAG
AGGCTCTGACCTCGGCGGTGCGGCGGGGCTTGTTTGTCTCGTAAGGGAAT
GATGAAAGGGAAACTCTCTGGAGTGGAGCGCAGGAAAGGATTATTGCata
caggaaggggaaggtctTTTCTGGGTGTTCAGAACTCGATGTGGAGCCTT
ATCTCTCTATATGAAATGGCAAATCGATTTATTGGTGCATATTTTGTTGG
GGAATAGCTCCATTTTCCCATCATCGTTTCATGTCACACATCTAAAATAA
AAATTGAAGGCGACAACGCGATGTTAGCCTGTAATTAACTTTACTTTCTG
TACTTCGCACATATGAGAGGATTGCATTAGGACGAGTGCGCTCCATTGTT
TTCCAAAACCCATTCCAAGCATTAAGCCC

Coding sequence (CDS) from alignment at CM002473.1:224914..227492+

>rna7741 ID=rna7741|Name=rna7741|organism=Nannochloropsis gaditana|type=CDS|length=2748bp|location=Sequence derived from alignment at CM002473.1:224914..227492+ (Nannochloropsis gaditana)
ATGAGTATGGCAAGTACAACTAGTGCCAGTAGTCTAaatagcagcagcag
caataaCAGTGACAGCAACAACGTGAAGGCTGGGCTCTGCAGCACCATTG
AGAGCATGGGCCCGGGGTCGGGGAGCGACATGGAGACTAAATCAGCGGAT
CTTCAGTCCATTCACCCCACTGCCTTCAAACCTGGCGGAAAATGGACAAG
CAAAGAAGACGAGCAACTTCGAAAGGGAGTGACAGCGGTTGGAGAGTGCA
ACTGGGACACAATATCGACGCAGTTTCTGCACTCGCAACGCTCGGCCATC
CAATGCTCGCATCGGTGGCAAAAAGTTTTGCGTCCAGGCCTTGTCAAAGG
GCCCTGGAcacaagaagaggacgatatCATAGTCGTATGTCGGCAGAACG
GGGTGACCGAGTGGAAAGAGATCGCCCTCCGCTTAGAAGGGAGGCTAGGG
AAGCAGTGCCGAGACCGGTGGTTGAACCACTTGGACCCGGCCATCAGCAA
GCACTActggacggaggaagaggacaaggtcCTTGCCGAAGGCCGCAGGC
TTTACGGGAACGCCTGGGCGAAAATAGCCAAGCTTCTTCCAGGAAGGCCG
GAGAATTCTATCAAAAATCGCTGGTATAGCGCACGCCGGGCTCAAGAGCG
CTCCTTCGTTGCCCCGCCACGCTGGGACCTGAAATTTGAAAAGAAAGTTA
TCAGCGATTTTTGCGCTTCGTTtcgcaaggaggaggttaacgTGGACGAC
ATTCTCGCCCATATCATCGCCGTCCTCCGTGTCCGGGACCCAGTGGCTTA
CTCTCCGTCCCTCGCGCACATCAACCGCCAGAAGCTCCACCGACGCCTCA
CCGCGGGGCTGAAAAGAGAGGCGGCCAAGTATCAACCGGACTCCGACCTC
CGGCAGGCCCTGAGGCGCGCCAAGTTGGTACAGCAGAAAGGAGGCTCCTG
GGAGGGGTTGGCGGCTCGCAGGTTGGCTGCGGCACCCAATGGGCCCGTGC
TTGCCTCCGACACCTCGCAAGGCCcggccatcccctcctcgtcctcctcc
acctcacatcccgccctgcccctttcgGCGTCgccctgctcttcctcttt
ccacccgcctccccccccgggcgcCGATACCCATATGAGCCAGGTCatga
tcctcctccaggatgCCTTGCGCGCGGAGACAGACTCCGGCCGAAGAGAG
CTGCTGCAGCAAGCAGTCTCGGCGACCGTACAGTCCAACCGAGCCGCCGT
CAACTACGTGGAAGGGATCCTGGGCGGAGGCTTTGCCAAGCTGGACTTGC
AGGACGCGGGGGACAGGGCCAGCCTGGTAGAGGCTCTGACCTCGGCGGTG
CGGCGGGGCTTGTTTGTCTCGTAAATGAGTATGGCAAGTACAACTAGTGC
CAGTAGTCTAaatagcagcagcagcaataaCAGTGACAGCAACAACGTGA
AGGCTGGGCTCTGCAGCACCATTGAGAGCATGGGCCCGGGGTCGGGGAGC
GACATGGAGACTAAATCAGCGGATCTTCAGTCCATTCACCCCACTGCCTT
CAAACCTGGCGGAAAATGGACAAGCAAAGAAGACGAGCAACTTCGAAAGG
GAGTGACAGCGGTTGGAGAGTGCAACTGGGACACAATATCGACGCAGTTT
CTGCACTCGCAACGCTCGGCCATCCAATGCTCGCATCGGTGGCAAAAAGT
TTTGCGTCCAGGCCTTGTCAAAGGGCCCTGGAcacaagaagaggacgata
tCATAGTCGTATGTCGGCAGAACGGGGTGACCGAGTGGAAAGAGATCGCC
CTCCGCTTAGAAGGGAGGCTAGGGAAGCAGTGCCGAGACCGGTGGTTGAA
CCACTTGGACCCGGCCATCAGCAAGCACTActggacggaggaagaggaca
aggtcCTTGCCGAAGGCCGCAGGCTTTACGGGAACGCCTGGGCGAAAATA
GCCAAGCTTCTTCCAGGAAGGCCGGAGAATTCTATCAAAAATCGCTGGTA
TAGCGCACGCCGGGCTCAAGAGCGCTCCTTCGTTGCCCCGCCACGCTGGG
ACCTGAAATTTGAAAAGAAAGTTATCAGCGATTTTTGCGCTTCGTTtcgc
aaggaggaggttaacgTGGACGACATTCTCGCCCATATCATCGCCGTCCT
CCGTGTCCGGGACCCAGTGGCTTACTCTCCGTCCCTCGCGCACATCAACC
GCCAGAAGCTCCACCGACGCCTCACCGCGGGGCTGAAAAGAGAGGCGGCC
AAGTATCAACCGGACTCCGACCTCCGGCAGGCCCTGAGGCGCGCCAAGTT
GGTACAGCAGAAAGGAGGCTCCTGGGAGGGGTTGGCGGCTCGCAGGTTGG
CTGCGGCACCCAATGGGCCCGTGCTTGCCTCCGACACCTCGCAAGGCCcg
gccatcccctcctcgtcctcctccacctcacatcccgccctgcccctttc
gGCGTCgccctgctcttcctctttccacccgcctccccccccgggcgcCG
ATACCCATATGAGCCAGGTCatgatcctcctccaggatgCCTTGCGCGCG
GAGACAGACTCCGGCCGAAGAGAGCTGCTGCAGCAAGCAGTCTCGGCGAC
CGTACAGTCCAACCGAGCCGCCGTCAACTACGTGGAAGGGATCCTGGGCG
GAGGCTTTGCCAAGCTGGACTTGCAGGACGCGGGGGACAGGGCCAGCCTG
GTAGAGGCTCTGACCTCGGCGGTGCGGCGGGGCTTGTTTGTCTCGTAA

Synonyms

Publications