EWM22952.1, cds7720 (CDS) Nannochloropsis gaditana

Overview
NameEWM22952.1
Unique Namecds7720
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:225648..226243 +
Alignment locationCM002473.1:226380..227157 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22952.1
Productmyb-like protein
Orig transcript idgnl|cribi|Naga_100396g1.7450.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:225648..226243 +
CM002473.1supercontigCM002473.1:226380..227157 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457
            MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS
Sbjct:  101 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 557          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query:    1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457
            MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS
Sbjct:    1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 232.646 bits (592), Expect = 4.057e-65
Identity = 126/296 (42.57%), Postives = 166/296 (56.08%), Query Frame = 0
Query:   45 ETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 308
            E +   L S+      PG  WT ++D +LRK V + G  NW  IS +      +  QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK  W+ EEDK L  G+  +GNAWAKIA LLPGR ENS+KNRW SA  A+ R  V    PP WD   E++ + ++C                            +S RK    + D +  ++  L   +P  Y   L   + + LH RL   L+REA KY P   L R  LRRA+
Sbjct:  113 EGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana])

HSP 1 Score: 198.364 bits (503), Expect = 3.205e-52
Identity = 92/160 (57.50%), Postives = 116/160 (72.50%), Query Frame = 0
Query:   61 PGG--KWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERS 218
            PGG  +W+ +ED  LR  V + G   W  IS +FL  +RS +QC HRWQKVL+PGLVKGPWT EED II+ C Q G  +W  IA  + GRLGKQCR+RW N+LDPA+ K  WTEEED+VLAE +  +GNAW KIA+ LPGR EN++KNRW S+ R +E++
Sbjct:  160 PGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKA 319          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|1002266211|ref|XP_015637435.1| (PREDICTED: uncharacterized protein LOC4339005 [Oryza sativa Japonica Group])

HSP 1 Score: 186.808 bits (473), Expect = 3.212e-49
Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query:   63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
            G WT +EDE+LRK V      NW  I+  F  S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G  +W  IA  L GR+GKQCR+RW NHLDP I K  WT EE++VLA    +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct:   59 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 210          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|222631846|gb|EEE63978.1| (hypothetical protein OsJ_18804 [Oryza sativa Japonica Group])

HSP 1 Score: 186.808 bits (473), Expect = 3.360e-49
Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query:   63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
            G WT +EDE+LRK V      NW  I+  F  S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G  +W  IA  L GR+GKQCR+RW NHLDP I K  WT EE++VLA    +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct:   56 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 207          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|125552603|gb|EAY98312.1| (hypothetical protein OsI_20220 [Oryza sativa Indica Group])

HSP 1 Score: 186.808 bits (473), Expect = 3.413e-49
Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query:   63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
            G WT +EDE+LRK V      NW  I+  F  S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G  +W  IA  L GR+GKQCR+RW NHLDP I K  WT EE++VLA    +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct:   57 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 208          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|514749435|ref|XP_004961857.1| (PREDICTED: myb-related protein A-like [Setaria italica] >gi|955716056|ref|XP_014660295.1| PREDICTED: myb-related protein A-like [Setaria italica] >gi|944250912|gb|KQL15175.1| hypothetical protein SETIT_021484mg [Setaria italica])

HSP 1 Score: 186.037 bits (471), Expect = 8.848e-49
Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 0
Query:   63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
            G WT  EDE+LRK V A    NW  I+  F    R+++QC HRWQKVL P L+KGPWTQEEDDII+ + ++ G  +W  IA  L+GR+GKQCR+RW NHLDP I K  W+ EE++V+A+  RL+GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct:   69 GGWTLDEDEKLRKAVGACNGKNWKKIAESF--PDRTSVQCLHRWQKVLNPELIKGPWTQEEDDIIINMVKKYGPKKWSLIARSLDGRIGKQCRERWHNHLDPQIIKEAWSVEEERVVADAHRLHGNKWAEIAKLLPGRTDNSIKNHWNSSLR 218          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|474139829|gb|EMS56516.1| (Myb-related protein 3R-1 [Triticum urartu])

HSP 1 Score: 184.882 bits (468), Expect = 1.165e-48
Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 0
Query:   63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
            G WT +EDE LRK VT     NW  ++  F    R+ +QC HRWQKVL P L+KGPWTQEEDD I+   +++G T+W  IA  L GR+GKQCR+RW NHLDP I K  WT EE++VL +  R++GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct:   36 GGWTPEEDETLRKAVTVFKGKNWKRVAEFF--PDRTEVQCLHRWQKVLDPELIKGPWTQEEDDTIIQKVKEHGPTKWSVIARSLHGRIGKQCRERWHNHLDPQIRKEAWTFEEEQVLVDAHRMHGNKWAEIAKLLPGRTDNSIKNHWNSSVR 185          
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|357133393|ref|XP_003568309.1| (PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Brachypodium distachyon] >gi|721637523|ref|XP_010231305.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Brachypodium distachyon] >gi|944070429|gb|KQK05913.1| hypothetical protein BRADI_2g23320 [Brachypodium distachyon])

HSP 1 Score: 184.496 bits (467), Expect = 2.994e-48
Identity = 93/179 (51.96%), Postives = 117/179 (65.36%), Query Frame = 0
Query:   36 MGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
            M P   S  ++ S   ++  P     GG WT +EDE LRK V A    NW  I+  F    R+ +QC HRWQKVL P L+KGPWTQEEDD IV + +++G  +W  IA  L+GR+GKQCR+RW NHLDP I K  WT EE++VL +   L+GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct:   38 MSPAVSSPADSISGRRRTSGPVRRAKGG-WTPEEDETLRKAVYAFKGKNWKKIAESF--PDRTEVQCLHRWQKVLDPELIKGPWTQEEDDTIVDMVKKHGPRKWSLIAKSLDGRIGKQCRERWHNHLDPQIRKEAWTTEEEQVLVKAHHLHGNRWAEIAKLLPGRTDNSIKNHWNSSVR 213          
The following BLAST results are available for this feature:
BLAST of EWM22952.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103683|gb|EWM22951.1|0.000e+0100.00myb-like protein [Nannochloropsis gaditana][more]
gi|585103684|gb|EWM22952.1|0.000e+0100.00myb-like protein [Nannochloropsis gaditana][more]
gi|585100989|gb|EWM20993.1|4.057e-6542.57myb-related 3r-1-like protein [Nannochloropsis gad... [more]
gi|585108315|gb|EWM26309.1|3.205e-5257.50transcriptional activator myb [Nannochloropsis gad... [more]
gi|1002266211|ref|XP_015637435.1|3.212e-4956.49PREDICTED: uncharacterized protein LOC4339005 [Ory... [more]
gi|222631846|gb|EEE63978.1|3.360e-4956.49hypothetical protein OsJ_18804 [Oryza sativa Japon... [more]
gi|125552603|gb|EAY98312.1|3.413e-4956.49hypothetical protein OsI_20220 [Oryza sativa Indic... [more]
gi|514749435|ref|XP_004961857.1|8.848e-4957.24PREDICTED: myb-related protein A-like [Setaria ita... [more]
gi|474139829|gb|EMS56516.1|1.165e-4856.58Myb-related protein 3R-1 [Triticum urartu][more]
gi|357133393|ref|XP_003568309.1|2.994e-4851.96PREDICTED: cyclin-D-binding Myb-like transcription... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7741rna7741Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications