EWM22952.1, cds7720 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585103683|gb|EWM22951.1| (myb-like protein [Nannochloropsis gaditana]) HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0 Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query: 1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457
MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS
Sbjct: 101 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 557
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585103684|gb|EWM22952.1| (myb-like protein [Nannochloropsis gaditana]) HSP 1 Score: 939.488 bits (2427), Expect = 0.000e+0 Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 0
Query: 1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457
MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS
Sbjct: 1 MSMASTTSASSLNSSSSNNSDSNNVKAGLCSTIESMGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFVAPPRWDLKFEKKVISDFCASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDLRQALRRAKLVQQKGGSWEGLAARRLAAAPNGPVLASDTSQGPAIPSSSSSTSHPALPLSASPCSSSFHPPPPPGADTHMSQVMILLQDALRAETDSGRRELLQQAVSATVQSNRAAVNYVEGILGGGFAKLDLQDAGDRASLVEALTSAVRRGLFVS 457
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585100989|gb|EWM20993.1| (myb-related 3r-1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 232.646 bits (592), Expect = 4.057e-65 Identity = 126/296 (42.57%), Postives = 166/296 (56.08%), Query Frame = 0
Query: 45 ETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERSFV---APPRWDLKFEKKVISDFC----------------------------ASFRKEEVNVDDILAHIIAVLRVRDPVAYSPSLAHINRQKLHRRLTAGLKREAAKYQPDSDL-RQALRRAK 308
E + L S+ PG WT ++D +LRK V + G NW IS + + QC +RW KVLRPGLVKGPW +EED +I+ C ++G+T+W EIA R+ GRLGKQCR+RWLNHLDP++SK W+ EEDK L G+ +GNAWAKIA LLPGR ENS+KNRW SA A+ R V PP WD E++ + ++C +S RK + D + ++ L +P Y L + + LH RL L+REA KY P L R LRRA+
Sbjct: 113 EGEDPRLVSVDEDEADPGPSWTDEQDAKLRKVVASRGPKNWKKISQEHFQGLYTDTQCLNRWYKVLRPGLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAAMARLRGSVDRSPPPDWDEDLERQTVREYCLRMAEAVGASEPQEGMARAAGAWPPASDSSIRKMSSKLADFIPSVMGALEGANPGLYG-GLGSAHIKPLHARLRVMLEREAEKYGPTHALYRSVLRRAQ 407
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|585108315|gb|EWM26309.1| (transcriptional activator myb [Nannochloropsis gaditana]) HSP 1 Score: 198.364 bits (503), Expect = 3.205e-52 Identity = 92/160 (57.50%), Postives = 116/160 (72.50%), Query Frame = 0
Query: 61 PGG--KWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIVVCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQERS 218
PGG +W+ +ED LR V + G W IS +FL +RS +QC HRWQKVL+PGLVKGPWT EED II+ C Q G +W IA + GRLGKQCR+RW N+LDPA+ K WTEEED+VLAE + +GNAW KIA+ LPGR EN++KNRW S+ R +E++
Sbjct: 160 PGGGKRWSKEEDAMLRAAVASKGPQCWKQISDEFLEGKRSDVQCLHRWQKVLQPGLVKGPWTAEEDQIILRCVQEGNLKWAAIADLIPGRLGKQCRERWYNNLDPALKKGEWTEEEDRVLAEAQAKWGNAWTKIARSLPGRSENAVKNRWNSSTRRREKA 319
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|1002266211|ref|XP_015637435.1| (PREDICTED: uncharacterized protein LOC4339005 [Oryza sativa Japonica Group]) HSP 1 Score: 186.808 bits (473), Expect = 3.212e-49 Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
G WT +EDE+LRK V NW I+ F S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G +W IA L GR+GKQCR+RW NHLDP I K WT EE++VLA +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct: 59 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 210
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|222631846|gb|EEE63978.1| (hypothetical protein OsJ_18804 [Oryza sativa Japonica Group]) HSP 1 Score: 186.808 bits (473), Expect = 3.360e-49 Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
G WT +EDE+LRK V NW I+ F S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G +W IA L GR+GKQCR+RW NHLDP I K WT EE++VLA +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct: 56 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 207
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|125552603|gb|EAY98312.1| (hypothetical protein OsI_20220 [Oryza sativa Indica Group]) HSP 1 Score: 186.808 bits (473), Expect = 3.413e-49 Identity = 87/154 (56.49%), Postives = 109/154 (70.78%), Query Frame = 0
Query: 63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARRAQ 215
G WT +EDE+LRK V NW I+ F S R+ +QC HRWQKVL P L+KGPWTQEEDD+I+ + +++G +W IA L GR+GKQCR+RW NHLDP I K WT EE++VLA +YGN WA+IAKLLPGR +NSIKN W S+ R +
Sbjct: 57 GGWTPEEDEKLRKAVDIYNGKNWKKIAESF--SDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKK 208
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|514749435|ref|XP_004961857.1| (PREDICTED: myb-related protein A-like [Setaria italica] >gi|955716056|ref|XP_014660295.1| PREDICTED: myb-related protein A-like [Setaria italica] >gi|944250912|gb|KQL15175.1| hypothetical protein SETIT_021484mg [Setaria italica]) HSP 1 Score: 186.037 bits (471), Expect = 8.848e-49 Identity = 87/152 (57.24%), Postives = 110/152 (72.37%), Query Frame = 0
Query: 63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
G WT EDE+LRK V A NW I+ F R+++QC HRWQKVL P L+KGPWTQEEDDII+ + ++ G +W IA L+GR+GKQCR+RW NHLDP I K W+ EE++V+A+ RL+GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct: 69 GGWTLDEDEKLRKAVGACNGKNWKKIAESF--PDRTSVQCLHRWQKVLNPELIKGPWTQEEDDIIINMVKKYGPKKWSLIARSLDGRIGKQCRERWHNHLDPQIIKEAWSVEEERVVADAHRLHGNKWAEIAKLLPGRTDNSIKNHWNSSLR 218
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|474139829|gb|EMS56516.1| (Myb-related protein 3R-1 [Triticum urartu]) HSP 1 Score: 184.882 bits (468), Expect = 1.165e-48 Identity = 86/152 (56.58%), Postives = 107/152 (70.39%), Query Frame = 0
Query: 63 GKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
G WT +EDE LRK VT NW ++ F R+ +QC HRWQKVL P L+KGPWTQEEDD I+ +++G T+W IA L GR+GKQCR+RW NHLDP I K WT EE++VL + R++GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct: 36 GGWTPEEDETLRKAVTVFKGKNWKRVAEFF--PDRTEVQCLHRWQKVLDPELIKGPWTQEEDDTIIQKVKEHGPTKWSVIARSLHGRIGKQCRERWHNHLDPQIRKEAWTFEEEQVLVDAHRMHGNKWAEIAKLLPGRTDNSIKNHWNSSVR 185
BLAST of EWM22952.1 vs. NCBI_GenBank
Match: gi|357133393|ref|XP_003568309.1| (PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Brachypodium distachyon] >gi|721637523|ref|XP_010231305.1| PREDICTED: cyclin-D-binding Myb-like transcription factor 1 isoform X1 [Brachypodium distachyon] >gi|944070429|gb|KQK05913.1| hypothetical protein BRADI_2g23320 [Brachypodium distachyon]) HSP 1 Score: 184.496 bits (467), Expect = 2.994e-48 Identity = 93/179 (51.96%), Postives = 117/179 (65.36%), Query Frame = 0
Query: 36 MGPGSGSDMETKSADLQSIHPTAFKPGGKWTSKEDEQLRKGVTAVGECNWDTISTQFLHSQRSAIQCSHRWQKVLRPGLVKGPWTQEEDDIIV-VCRQNGVTEWKEIALRLEGRLGKQCRDRWLNHLDPAISKHYWTEEEDKVLAEGRRLYGNAWAKIAKLLPGRPENSIKNRWYSARR 213
M P S ++ S ++ P GG WT +EDE LRK V A NW I+ F R+ +QC HRWQKVL P L+KGPWTQEEDD IV + +++G +W IA L+GR+GKQCR+RW NHLDP I K WT EE++VL + L+GN WA+IAKLLPGR +NSIKN W S+ R
Sbjct: 38 MSPAVSSPADSISGRRRTSGPVRRAKGG-WTPEEDETLRKAVYAFKGKNWKKIAESF--PDRTEVQCLHRWQKVLDPELIKGPWTQEEDDTIVDMVKKHGPRKWSLIAKSLDGRIGKQCRERWHNHLDPQIRKEAWTTEEEQVLVKAHHLHGNRWAEIAKLLPGRTDNSIKNHWNSSVR 213 The following BLAST results are available for this feature:
BLAST of EWM22952.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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