rna7598, rna7598 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7598
Unique Name	rna7598
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2352
Alignment location	CM002472.1:339090..340304 +

Link to JBrowse

Properties


Property Name	Value
Product	abc transporter b family protein
Orig transcript id	gnl\|cribi\|Naga_100334g5.8497.mrna
Orig protein id	gnl\|cribi\|Naga_100334g5.8497
Gene	abcB3
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:339090..340304 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
abcB3	gene7356	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7598	rna7598-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23098.1	cds7578	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:339090..340304+
coding sequence from alignment at CM002472.1:339090..340304+

mRNA sequence

>rna7598 ID=rna7598|Name=rna7598|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp
TATGAGTGCAAGAAGTATAAGAGAAAATTCACTCACGGCCGCGAAGATGG
GGGGATTGGCAGCCTTGCTTATGATGCTGCTGGTTGCTGTTGCCCCGCCT
CCTGGTCTCGCCTTTTTCCAGCCAGCGGGTTTGATATCATCAAGACTGCA
ATCGATAGCACCACCACCGCCCACATCTCCTCCAAATGCCTGCCCTGGAA
CAAAAACATCCTATTTCTTGCCCTCTTTCCCTTCCTTAACTGTGTTTGGG
GCCATCAAGGGGAGGGCTACCAGAACCTCCCTGTATGCTGCAGCGCCTGC
CTCACCCGCGTCCTCGAGCAGCGGCAACGCGGGAAGGGACGAGGACGAGG
AAGGCAGTTTTCCGGACGAAAGCGATAGCCCCACGCCGTCCTCCCCCGAC
ACGTGGCGAAGCAATGGAGGGGAAGCCTTGCCACCGACCAAGCACACCAC
GCAAATCGACTTGACAGGTATCCCCGGACAGGTCATGGGCAGCATCTTCA
AGCTGAAAGTGACCTCCTGCCCGCCCTTGTTCCGCAGACCTTGGAGCAGG
CAGCCCACGTCCACGTCCTTCTCCACCGCCTGGGCCTTCGATGTGAAGGA
GAAGCTCCTCTTAACCAACAGCCATTGCGTGGCAGACGCCGTGGTTATCA
ACGTGAAAAAACCGGGCAATGCCGACTTGTTCAAAGCGGAAGTGCTGGGG
AAGAGCGACCATTCCGACCTGGCCCTCATTCGGGTTCCGGATGAGGTGTT
TTGGGAGGGGGTGGAAGCGATTCGGATGGAGGCCGGGGATGTGCAACTGG
GGGAATTGGTCACTGTCGTCGGCTACCCGCGGGGGGGGGAGAAAATTTGC
CTGACCAAAGGCATTGTCTCCCGGCTGCATTTTAATGGAGAGTACCTGGC
CATTCAAATCGACGCGGCAATCAATCCCGGGAACTCGGGGGGCCCCGTCT
TGAACGAGAGGGGGGACTGCGTGGGCATCGCCTACCGGAAACGGGTCGAT
CGGGGATCCGAGAACATTGGGTACATCATCCCCGTGGAAGTCGTCCACCA
CTTTCTAGAAGATTTCCGGCGGCACGGGCAGGACATGGGCGCCTGTCTGC
AAGGCTTCGAACTGCAAGACTTGACCAACGCGGCGTTGAGGGAGTCGGTG
GCGGGAAACCACACGGGTTGTCTGGTCATCGAGGTCGCGGCCTGGACGAA
TGCGGCGGCCCATTTGCAAAAGGGTGACGTGGTGCTCTCCATCGACGGAC
ACAAATTACAGAACGACAAGACGGTGCCGTTCAAGGACTTGGACTACATC
AACTTTGAATTTTTAATGTCTTACCATTTTGTGGGGGACATGATGCGGGT
GGAGGTCCTCCGAAAGGAGCCTGTCGTGGAAGGGGAGGATGGTGCCGCCT
TGCCTCCTGCCAACACCTTTCACAAATTAAACCTGACCTGGGAGATGCAA
AAACGCCACCCCATCCTCCCATCCCGTCCGCAAAAGCAAAGCTTTTTGAT
GGTGGGCGGTCTCTTATTCTTGCCCTTGTCCTGGGAGATTCTGGACCCCG
ACCGATCCACCCGAGCCTTGCGATCCTTTTGCGAAAGCGTTCGCCGCATC
TCTGCGGACGAGGAAGTTGTGGTGTTGTCGGAAATCTTCCCACACCCGAT
CAACGATGGGTACTTTCCCCCTCGTCTGACCCGGGTCTTGACTTTCAATG
ACGTTCCGGTTCGAAACCTGAGTCATCTCACCACCATGATAGAAGACTGC
ACGGAGGATTGGATGCGTTTTAAGGTAGACTCAAATCTACAGCAGATGAT
CGTCCTGGATGCCCGTGAAAATGCGGTCTGGAATGCCACGCAGGAGATTT
GCGAGATATATTCGGTCCCGTACTACAAGCCATTACCGGCGCGGAAGGAA
GGAGAGGAAGGCGGGGAGAGTGAACTGCCTCTTTGGCAGCGTTCACATGC
CAAAGGAGAGGGTACCAAGTGGTGAACAAAGAAGAGGAGAGCCAGGAAAA
GAAAGTTCAATTCTGAAAGCATAGTGTAAATTGTTTTGTGTGTAGAAATG
ATGATGCGATGCGCAAGGACATAAGCGTCTGAGGCTTGCAATTGCCTGTA
GAAAGGCCAGGTAAGAAGTCAAAATGGGAAAAAGGCAGCTAAAGTAACCT
CGCGATGTCGGGGGCAGCGATACTAAAGTGCGAAACAGACGGCGTAGAAC
GAAATCAGCGAAAAAATTAGGGACGATTTGTTTTCGTTCGACGTACGTTG
CACTTGGCGGTTATTTGGATCATGGACGAGTTCTTAAAACAAAAGCTTTC
TATTTATGGAGAACCATCAGGCCTGCTTTATTACACAATCCGGTCCGGTC
CA

protein sequence of rna7598

>rna7598-protein ID=rna7598-protein|Name=rna7598|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MAVSNAAVLPSAGDAKDKDALTASTPAPPAPKVELVPFSDLFYFADGLDW
FCMFLGTLSACATGVAMPVFMIIFGSILDEIGTGQGSFKDTINQLALAMS
ALGAGTFLVSAFQVAFFAYASARQTERLRATLLRSILRQEIGWFDTNNGG
ELATVLSEATSAFQEGTGRRVSEGVQALAQFLAGLIIAFTQSWRLSLVLL
AGLPLIGGAAVALSSVMSEAKAATSAQYAKAGGVANEALGAIRTVASLGA
ERKFMEAYNRLIEEAERWRTICPVSWRGEPGASRAGL

mRNA from alignment at CM002472.1:339090..340304+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7598 ID=rna7598|Name=rna7598|organism=Nannochloropsis gaditana|type=mRNA|length=1215bp|location=Sequence derived from alignment at CM002472.1:339090..340304+ (Nannochloropsis gaditana)
ATGGCGGTTAGTAATGCAGCAGTTCTTCCGTCGGCCGGCGATGCTAAAGA
CAAGGACGCCCTTACCGCCTCGACACCTGCACCTCCAGCTCCTAAGGTCG
AACTGGTTCCGTTTTCGGACCTCTTCTATTTCGCGGACGGCTTGGACTGG
TTCTGCATGTTCTTGGGCACCTTGAGTGCCTGTGCCACGGGTGTGGCCAT
GCCTGTGTTCATGATCATCTTCGGCTCAATTTTGGACGAAATCGGTACTG
GTCAAGGTTCCTTCAAAGACACGATCAATCAACTCGCCCTCGCCATGTCG
GCGTTGGGAGCAGGGACCTTTCTGGTCTCCGCCTTCCAAGTTGCATTCTT
CGCCTACGCCTCGGCCCGCCAGACAGAAAGGCTCCGAGCCACGTTGTTGC
GGTCCATTCTGCGACAGGTGAGTGCAGGACGAACGAAGATAAGGAACGTA
CAAAGCTGGGGCAAGGCTTAAACCCACAGTAAAGTATTCAGTGAGGGAAA
AAATATCGACAAGCTGGGCAGATGAAAGAAGAGATCAGGGCAGGATTTGG
AATCGTTGCGAAGAAACGAATGTATGCGAAATTTCCTTAGAAGACGCCAG
CACGTTAacctcgccttcccaccctccctccctcccttcttccctctccc
tttttccgcGCCCAGGAAATCGGTTGGTTCGACACCAACAATGGCGGGGA
GCTGGCCACAGTCCTCTCGGAGGCGACCAGCGCCTTCCAAGAGGGCACCG
GGCGACGGGTCTCGGAAGGCGTCCAGGCCCTCGCCCAATTCCTGGCCGGC
CTCATCATCGCCTTCACTCAATCCTGGCGCCTCTCCCTGGTCTTGCTCGC
GGGCCTCCCTTTGATCGGCGgggcggccgtggccctcTCCTCGGTCATGT
CGGAGGCCAAAGCCGCCACGTCCGCGCAATACGCCAAGGCCGGGGGAGTG
GCGAACGAGGCGTTGGGGGCGATCAGGACTGTGGCCTCCCTGGGCGCGGA
GCGGAAATTCATGGAGGCTTACAACCGCTTGATCGAAGAAGCCGAACGGG
TCGGGATTGGCAAGTCGGTCAAACTCGGCGCGGCGAACGGACTTTTGTTC
TCCTCGGCCTTTTTCATCTACGCCTTGGCCTTTTGGTACGGTTCCTTGCA
AGTGGCGGACAATTTGCCCTGTGTCTTGGCGGGGGGAACCGGGTGCATCA
CGGGCGGGGCTGTGA

Coding sequence (CDS) from alignment at CM002472.1:339090..340304+

>rna7598 ID=rna7598|Name=rna7598|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002472.1:339090..340304+ (Nannochloropsis gaditana)
ATGGCGGTTAGTAATGCAGCAGTTCTTCCGTCGGCCGGCGATGCTAAAGA
CAAGGACGCCCTTACCGCCTCGACACCTGCACCTCCAGCTCCTAAGGTCG
AACTGGTTCCGTTTTCGGACCTCTTCTATTTCGCGGACGGCTTGGACTGG
TTCTGCATGTTCTTGGGCACCTTGAGTGCCTGTGCCACGGGTGTGGCCAT
GCCTGTGTTCATGATCATCTTCGGCTCAATTTTGGACGAAATCGGTACTG
GTCAAGGTTCCTTCAAAGACACGATCAATCAACTCGCCCTCGCCATGTCG
GCGTTGGGAGCAGGGACCTTTCTGGTCTCCGCCTTCCAAGTTGCATTCTT
CGCCTACGCCTCGGCCCGCCAGACAGAAAGGCTCCGAGCCACGTTGTTGC
GGTCCATTCTGCGACAGGAAATCGGTTGGTTCGACACCAACAATGGCGGG
GAGCTGGCCACAGTCCTCTCGGAGGCGACCAGCGCCTTCCAAGAGGGCAC
CGGGCGACGGGTCTCGGAAGGCGTCCAGGCCCTCGCCCAATTCCTGGCCG
GCCTCATCATCGCCTTCACTCAATCCTGGCGCCTCTCCCTGGTCTTGCTC
GCGGGCCTCCCTTTGATCGGCGgggcggccgtggccctcTCCTCGGTCAT
GTCGGAGGCCAAAGCCGCCACGTCCGCGCAATACGCCAAGGCCGGGGGAG
TGGCGAACGAGGCGTTGGGGGCGATCAGGACTGTGGCCTCCCTGGGCGCG
GAGCGGAAATTCATGGAGGCTTACAACCGCTTGATCGAAGAAGCCGAACG
GTGGCGGACAATTTGCCCTGTGTCTTGGCGGGGGGAACCGGGTGCATCAC
GGGCGGGGCTGTGAATGGCGGTTAGTAATGCAGCAGTTCTTCCGTCGGCC
GGCGATGCTAAAGACAAGGACGCCCTTACCGCCTCGACACCTGCACCTCC
AGCTCCTAAGGTCGAACTGGTTCCGTTTTCGGACCTCTTCTATTTCGCGG
ACGGCTTGGACTGGTTCTGCATGTTCTTGGGCACCTTGAGTGCCTGTGCC
ACGGGTGTGGCCATGCCTGTGTTCATGATCATCTTCGGCTCAATTTTGGA
CGAAATCGGTACTGGTCAAGGTTCCTTCAAAGACACGATCAATCAACTCG
CCCTCGCCATGTCGGCGTTGGGAGCAGGGACCTTTCTGGTCTCCGCCTTC
CAAGTTGCATTCTTCGCCTACGCCTCGGCCCGCCAGACAGAAAGGCTCCG
AGCCACGTTGTTGCGGTCCATTCTGCGACAGGAAATCGGTTGGTTCGACA
CCAACAATGGCGGGGAGCTGGCCACAGTCCTCTCGGAGGCGACCAGCGCC
TTCCAAGAGGGCACCGGGCGACGGGTCTCGGAAGGCGTCCAGGCCCTCGC
CCAATTCCTGGCCGGCCTCATCATCGCCTTCACTCAATCCTGGCGCCTCT
CCCTGGTCTTGCTCGCGGGCCTCCCTTTGATCGGCGgggcggccgtggcc
ctcTCCTCGGTCATGTCGGAGGCCAAAGCCGCCACGTCCGCGCAATACGC
CAAGGCCGGGGGAGTGGCGAACGAGGCGTTGGGGGCGATCAGGACTGTGG
CCTCCCTGGGCGCGGAGCGGAAATTCATGGAGGCTTACAACCGCTTGATC
GAAGAAGCCGAACGGTGGCGGACAATTTGCCCTGTGTCTTGGCGGGGGGA
ACCGGGTGCATCACGGGCGGGGCTGTGAATGGCGGTTAGTAATGCAGCAG
TTCTTCCGTCGGCCGGCGATGCTAAAGACAAGGACGCCCTTACCGCCTCG
ACACCTGCACCTCCAGCTCCTAAGGTCGAACTGGTTCCGTTTTCGGACCT
CTTCTATTTCGCGGACGGCTTGGACTGGTTCTGCATGTTCTTGGGCACCT
TGAGTGCCTGTGCCACGGGTGTGGCCATGCCTGTGTTCATGATCATCTTC
GGCTCAATTTTGGACGAAATCGGTACTGGTCAAGGTTCCTTCAAAGACAC
GATCAATCAACTCGCCCTCGCCATGTCGGCGTTGGGAGCAGGGACCTTTC
TGGTCTCCGCCTTCCAAGTTGCATTCTTCGCCTACGCCTCGGCCCGCCAG
ACAGAAAGGCTCCGAGCCACGTTGTTGCGGTCCATTCTGCGACAGGAAAT
CGGTTGGTTCGACACCAACAATGGCGGGGAGCTGGCCACAGTCCTCTCGG
AGGCGACCAGCGCCTTCCAAGAGGGCACCGGGCGACGGGTCTCGGAAGGC
GTCCAGGCCCTCGCCCAATTCCTGGCCGGCCTCATCATCGCCTTCACTCA
ATCCTGGCGCCTCTCCCTGGTCTTGCTCGCGGGCCTCCCTTTGATCGGCG
gggcggccgtggccctcTCCTCGGTCATGTCGGAGGCCAAAGCCGCCACG
TCCGCGCAATACGCCAAGGCCGGGGGAGTGGCGAACGAGGCGTTGGGGGC
GATCAGGACTGTGGCCTCCCTGGGCGCGGAGCGGAAATTCATGGAGGCTT
ACAACCGCTTGATCGAAGAAGCCGAACGGTGGCGGACAATTTGCCCTGTG
TCTTGGCGGGGGGAACCGGGTGCATCACGGGCGGGGCTGTGA

Synonyms

Publications