rna7161, rna7161 (mRNA) Nannochloropsis gaditana

Overview
Namerna7161
Unique Namerna7161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length492
Alignment locationCM002470.1:592211..593454 +

Link to JBrowse

Properties
Property NameValue
Productdolichol-phosphate mannosyltransferase subunit 3
Orig transcript idgnl|cribi|Naga_100934g2.4298.mrna
Orig protein idgnl|cribi|Naga_100934g2.4298
Genedpm3
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:592211..593454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
dpm3gene6923Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7161rna7161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23529.1cds7144Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7161 ID=rna7161|Name=rna7161|organism=Nannochloropsis gaditana|type=mRNA|length=492bp
ATGTATCATGGACTTTCACTTTCATTTCTCTTAAGTGGCGAGAAAAGTCA
TATTTCGGTCTCAACTATCGTGCATCTCCTCCTCACAGAGACTCTCAGCT
CTCCCTCCCTCCCTTTCTTCTCCTTCCTCTCTCCTTTCCTCTTCTCTTCC
CTGCTCTTTCTCTCACCCAGCTACATGGGCGGGAGCACGCTTCCCGCCGA
ACAGTCCCCTGCCCATGTGGACATGAAGAAGGAGGAGGAAGTGAACCAGT
TATTGAATAAAATTCGACGGGTGGAAAGCCAAAGCCGGCGGGTGCCAGCT
CCCAGCCCCTCAGTGGACGTGGTGTTGGGAAGTCAATGGGGAGATGAGGG
AAAAGGGAAGCTGGTGGACATTCTGTCCGCCCAATACGACGTGGTCGCCC
GCGTTGCGGGGGGGCTCCAATGCCGGCCACACCATCTACGTAGATGGAAG
GAAATACAAGCAACGGCGTGGTCGTCCACATCCCGCAGCTGA
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protein sequence of rna7161

>rna7161-protein ID=rna7161-protein|Name=rna7161|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MCCSGPTECSSRGCNEQIDITNSNNRKTTELVFAHTGTKGHYTTGVKGIG
FLAFVFVSRVISMSRPPPSPALWAPPRWMGLLLLFTLCTAVWLMLYSDPL
QSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALS
EDIRQAKADLWGKGFDIDH
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mRNA from alignment at CM002470.1:592211..593454+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7161 ID=rna7161|Name=rna7161|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at CM002470.1:592211..593454+ (Nannochloropsis gaditana)
ATGTGCTGCAGTGGCCCTACCGAGTGTAGCAGTCGTGGCTGCAATGAACA
GATCGATATCACGAACAGTAATAATCGGAAGACGACAGAGCTAGTCTTTG
CGCATACAGGTACAAAAGGGTGCTGCGCCCCGGTCATCCCTCGCATTCAA
GGTCCTTAAAATGCCTTAGGACCAATGGAATACCGTGGTTATATCATGCA
TGTAGGCCGTTTTCTTCTTTGTAATAAAGAATTGAGCCTAAACGTTCTAA
TACCCTCCCTTAGCCATGTCCTCAATGGGATGGGATGAAGGATAAAAAGT
TCTCAGATAGGAAGAAAACAACAGATTATTCAGGAAATAGGGATTTATGC
GCTTCTCTTCATAGAGATTATCACACGATGGTCATTAAGACCCTTAAGCT
GCTGGGATTGCCATCTGTGCGTTATTCTGAGGATTATCGTGGCTTCGGCT
CAGGTCATCAGGTGCTCGGGATCATAGACGTGAATCCTTGTCACTTGTAT
TGAGATGATGCCGGACTGATACTAACCTCTTTGTGTCGCTTGCGTTTCCG
TTTCCGTTTCTGTCCCGCTTGCATGTTAGTCGAAGACACTTTGCACTGTT
CATCCGTCATTACAAGATGCGAGTCCTTAGTACGATTGATACTTCAACCA
TTTTGATCCTATGTGACAATTTCTTGACGCATTATTCCTTCATTGCATca
attcctcccctcccaggcatTACACCACTGGCGTCAAAGGCATTGGCTTT
CTGGCCTTCGTCTTCGTTTCGCGCGTCATTAGCATGTCTCGTCCGCCCCC
CAGCCCAGCTCTCTGGGCCCCACCTCGATGGATgggcctcctgctccttt
tcaCGTTGTGCACCGCAGTCTGGCTCATGCTGTACTCAGACCCTTTGCAG
AGCTTCCACTTCACACAACCCGTGACGGACGTACTTGAGACGGTGAGGCT
GGACACGGCGTCGTTGAGGGATgcatggggggaggagactcACATCGAAT
GGATATCTTGCCATCTTCGGCGGATCATGTCTGGTCATGTGTTTGACACC
ACCCATCTCCAAATTCTATTTCCCTGCAGTTTCCCCTCTGGATTCTGGTT
TCGCTGGGCGCGTATGCGCTTGGAAGTATAGGTCTCAGCCTTATGTGTTT
TAATACGTGTCCTGAGGCTGTTGTGGCGCTCTCCGAGGATATAAGACAGG
CAAAGGCGGATCTATGGGGAAAAGGCTTCGATATAGACCATTGA
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Coding sequence (CDS) from alignment at CM002470.1:592211..593454+

>rna7161 ID=rna7161|Name=rna7161|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002470.1:592211..593454+ (Nannochloropsis gaditana)
ATGTGCTGCAGTGGCCCTACCGAGTGTAGCAGTCGTGGCTGCAATGAACA
GATCGATATCACGAACAGTAATAATCGGAAGACGACAGAGCTAGTCTTTG
CGCATACAGGTACAAAAGGgcatTACACCACTGGCGTCAAAGGCATTGGC
TTTCTGGCCTTCGTCTTCGTTTCGCGCGTCATTAGCATGTCTCGTCCGCC
CCCCAGCCCAGCTCTCTGGGCCCCACCTCGATGGATgggcctcctgctcc
ttttcaCGTTGTGCACCGCAGTCTGGCTCATGCTGTACTCAGACCCTTTG
CAGAGCTTCCACTTCACACAACCCGTGACGGACGTACTTGAGACGTTTCC
CCTCTGGATTCTGGTTTCGCTGGGCGCGTATGCGCTTGGAAGTATAGGTC
TCAGCCTTATGTGTTTTAATACGTGTCCTGAGGCTGTTGTGGCGCTCTCC
GAGGATATAAGACAGGCAAAGGCGGATCTATGGGGAAAAGGCTTCGATAT
AGACCATTGAATGTGCTGCAGTGGCCCTACCGAGTGTAGCAGTCGTGGCT
GCAATGAACAGATCGATATCACGAACAGTAATAATCGGAAGACGACAGAG
CTAGTCTTTGCGCATACAGGTACAAAAGGgcatTACACCACTGGCGTCAA
AGGCATTGGCTTTCTGGCCTTCGTCTTCGTTTCGCGCGTCATTAGCATGT
CTCGTCCGCCCCCCAGCCCAGCTCTCTGGGCCCCACCTCGATGGATgggc
ctcctgctccttttcaCGTTGTGCACCGCAGTCTGGCTCATGCTGTACTC
AGACCCTTTGCAGAGCTTCCACTTCACACAACCCGTGACGGACGTACTTG
AGACGTTTCCCCTCTGGATTCTGGTTTCGCTGGGCGCGTATGCGCTTGGA
AGTATAGGTCTCAGCCTTATGTGTTTTAATACGTGTCCTGAGGCTGTTGT
GGCGCTCTCCGAGGATATAAGACAGGCAAAGGCGGATCTATGGGGAAAAG
GCTTCGATATAGACCATTGAATGTGCTGCAGTGGCCCTACCGAGTGTAGC
AGTCGTGGCTGCAATGAACAGATCGATATCACGAACAGTAATAATCGGAA
GACGACAGAGCTAGTCTTTGCGCATACAGGTACAAAAGGgcatTACACCA
CTGGCGTCAAAGGCATTGGCTTTCTGGCCTTCGTCTTCGTTTCGCGCGTC
ATTAGCATGTCTCGTCCGCCCCCCAGCCCAGCTCTCTGGGCCCCACCTCG
ATGGATgggcctcctgctccttttcaCGTTGTGCACCGCAGTCTGGCTCA
TGCTGTACTCAGACCCTTTGCAGAGCTTCCACTTCACACAACCCGTGACG
GACGTACTTGAGACGTTTCCCCTCTGGATTCTGGTTTCGCTGGGCGCGTA
TGCGCTTGGAAGTATAGGTCTCAGCCTTATGTGTTTTAATACGTGTCCTG
AGGCTGTTGTGGCGCTCTCCGAGGATATAAGACAGGCAAAGGCGGATCTA
TGGGGAAAAGGCTTCGATATAGACCATTGA
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Synonyms
Publications