EWM23529.1, cds7144 (CDS) Nannochloropsis gaditana

Overview
NameEWM23529.1
Unique Namecds7144
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:592211..592329 +
Alignment locationCM002470.1:592927..593152 +
Alignment locationCM002470.1:593290..593454 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23529.1
Productdolichol-phosphate mannosyltransferase subunit 3
Orig transcript idgnl|cribi|Naga_100934g2.4298.mrna
Genedpm3
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:592211..592329 +
CM002470.1supercontigCM002470.1:592927..593152 +
CM002470.1supercontigCM002470.1:593290..593454 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013174DPM3
Homology
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|585104634|gb|EWM23529.1| (dolichol-phosphate mannosyltransferase subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 351.288 bits (900), Expect = 1.195e-122
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MCCSGPTECSSRGCNEQIDITNSNNRKTTELVFAHTGTKGHYTTGVKGIGFLAFVFVSRVISMSRPPPSPALWAPPRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH 169
            MCCSGPTECSSRGCNEQIDITNSNNRKTTELVFAHTGTKGHYTTGVKGIGFLAFVFVSRVISMSRPPPSPALWAPPRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH
Sbjct:    1 MCCSGPTECSSRGCNEQIDITNSNNRKTTELVFAHTGTKGHYTTGVKGIGFLAFVFVSRVISMSRPPPSPALWAPPRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH 169          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|553189248|ref|XP_005854963.1| (dolichol-phosphate mannosyltransferase subunit 3-like protein [Nannochloropsis gaditana CCMP526] >gi|422294103|gb|EKU21403.1| dolichol-phosphate mannosyltransferase subunit 3-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 187.193 bits (474), Expect = 1.494e-58
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0
Query:   63 MSRPPPSPALWAPPRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDIDH 169
            MSRPPP+PAL APPRWMGLLL+FTLCTAVW MLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLW KGFD DH
Sbjct:    1 MSRPPPNPALLAPPRWMGLLLIFTLCTAVWFMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWEKGFDTDH 107          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|1183421699|gb|ORY46038.1| (dolichol-phosphate mannosyltransferase subunit 3 [Rhizoclosmatium globosum])

HSP 1 Score: 72.0182 bits (175), Expect = 1.763e-13
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 0
Query:   77 RWMGLLLLFTLCTAVW--LMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDID 168
            R   +LL+F   TA W  LML+S  +      Q + ++    PLW+LV+ GAY+L SIG +L+ F  CPEA ++L ++I +AK DL  +G  ID
Sbjct:    4 RAQSILLVFAAGTAAWVLLMLHSVLIPFVPVPQYLDEIAPVLPLWLLVAFGAYSLASIGYALVTFGDCPEAYMSLLKEINEAKTDLKRRGVQID 97          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|470271760|ref|XP_004362932.1| (dolichol-phosphate mannosyltransferase subunit 3 [Dictyostelium fasciculatum] >gi|328876718|gb|EGG25081.1| dolichol-phosphate mannosyltransferase subunit 3 [Dictyostelium fasciculatum])

HSP 1 Score: 66.6254 bits (161), Expect = 2.089e-11
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 0
Query:   76 PRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKG 164
             R+  + ++  +   +W +L  D LQ F+    +  +L   PLW++V+ GAY+LGSI  +L+  + C EA  +LS++I++AK +L  KG
Sbjct:    2 KRYQKVTIVTIVTFLIWFVLLVDYLQ-FNLPSSIKSILPALPLWVVVTFGAYSLGSISYNLLIMSDCKEAYESLSDEIKEAKRNLRSKG 89          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|126307785|ref|XP_001373861.1| (PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Monodelphis domestica])

HSP 1 Score: 65.0846 bits (157), Expect = 6.471e-11
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   76 PRWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGF 165
             +W+  LL+  L   +WL L  D L S  ++Q   DV+   P+++LV+ G+Y LG++GL L  FN C EA   L + I++A+ADL  KG 
Sbjct:    5 KQWISTLLVLML---IWLCLVQDVL-SLGYSQKFHDVILPLPVYLLVTAGSYMLGTLGLRLANFNDCEEAAQELFQQIQEAQADLASKGL 90          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|914257581|gb|KNZ72949.1| (Dolichol-phosphate mannosyltransferase subunit 3 [Termitomyces sp. J132])

HSP 1 Score: 63.1586 bits (152), Expect = 4.266e-10
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0
Query:   87 LCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDID 168
            L T   L+ +      F   + V +++  FP W+LVS G+YAL S+G+ +  F  CPEA   L ++I QAK DL  +G  +D
Sbjct:   14 LTTLYLLVFFQTITVPFFEDKVVKEIIPVFPWWLLVSFGSYALWSLGMGIFSFRDCPEAYTELLQEISQAKNDLRSRGVTVD 95          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|1023255825|gb|KZT51230.1| (dolichol-phosphate mannosyltransferase subunit 3 [Calocera cornea HHB12733])

HSP 1 Score: 62.7734 bits (151), Expect = 6.812e-10
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 0
Query:   86 TLCTAVWLMLYSDPLQSFHFTQPVTD-VLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDID 168
             +CT ++ +LY   +     ++ V D +L   P W+LVS G+Y+LGS+G+ L+ F  CP+A   L  +I +AK DL  KG ++D
Sbjct:   12 AICTLIYALLYLRIIPVPFLSKQVADELLPVIPWWLLVSFGSYSLGSLGMGLLTFRDCPDAHQELLMEISEAKNDLRLKGVEVD 95          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|589269654|ref|XP_007000557.1| (hypothetical protein TREMEDRAFT_24904 [Tremella mesenterica DSM 1558] >gi|392580110|gb|EIW73237.1| hypothetical protein TREMEDRAFT_24904 [Tremella mesenterica DSM 1558])

HSP 1 Score: 62.3882 bits (150), Expect = 7.184e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  109 VTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDID 168
            V D+L   P W+LV+ G+Y+L S+GL L+ F+ CPEA  +L  +I QAK +L  +G D+D
Sbjct:   36 VDDILPVLPFWLLVTFGSYSLSSLGLGLVRFHDCPEAYESLLMEITQAKNELRDQGVDVD 95          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|598039765|ref|XP_007349255.1| (dolichol-phosphate mannosyltransferase subunit 3 [Auricularia subglabra TFB-10046 SS5] >gi|393235202|gb|EJD42759.1| dolichol-phosphate mannosyltransferase subunit 3 [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 62.003 bits (149), Expect = 9.583e-10
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 0
Query:  107 QPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDID 168
            +P + +L   P W+LVS G+Y+L ++G +++ F  CPEA   L++++ QAK DL  +G D+D
Sbjct:   28 EPASLILPVLPWWLLVSFGSYSLWTLGWAMLSFRECPEAYEELTKEVEQAKQDLRRRGVDVD 89          
BLAST of EWM23529.1 vs. NCBI_GenBank
Match: gi|330792411|ref|XP_003284282.1| (hypothetical protein DICPUDRAFT_86185 [Dictyostelium purpureum] >gi|325085735|gb|EGC39136.1| hypothetical protein DICPUDRAFT_86185 [Dictyostelium purpureum])

HSP 1 Score: 62.003 bits (149), Expect = 1.236e-9
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   77 RWMGLLLLFTLCTAVWLMLYSDPLQSFHFTQPVTDVLETFPLWILVSLGAYALGSIGLSLMCFNTCPEAVVALSEDIRQAKADLWGKGFDI 167
            R+  + L F    AVW ++  + +Q  + ++PV  ++   PL+ LV  G+Y+LG I  +L+  + C EA  +L ++I++AK  L  KG  +
Sbjct:    3 RYQKVFLTFASLMAVWFLILIEKIQ-LNLSEPVQSIIPFLPLYALVVFGSYSLGVIAYNLLIMSDCKEAADSLYDEIKEAKESLRSKGMKL 92          
The following BLAST results are available for this feature:
BLAST of EWM23529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104634|gb|EWM23529.1|1.195e-122100.00dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|553189248|ref|XP_005854963.1|1.494e-5894.39dolichol-phosphate mannosyltransferase subunit 3-l... [more]
gi|1183421699|gb|ORY46038.1|1.763e-1341.49dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|470271760|ref|XP_004362932.1|2.089e-1134.83dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|126307785|ref|XP_001373861.1|6.471e-1140.00PREDICTED: dolichol-phosphate mannosyltransferase ... [more]
gi|914257581|gb|KNZ72949.1|4.266e-1037.80Dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|1023255825|gb|KZT51230.1|6.812e-1038.10dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|589269654|ref|XP_007000557.1|7.184e-1046.67hypothetical protein TREMEDRAFT_24904 [Tremella me... [more]
gi|598039765|ref|XP_007349255.1|9.583e-1040.32dolichol-phosphate mannosyltransferase subunit 3 [... [more]
gi|330792411|ref|XP_003284282.1|1.236e-931.87hypothetical protein DICPUDRAFT_86185 [Dictyosteli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7161rna7161Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications