rna7140, rna7140 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7140
Unique Name	rna7140
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1444
Alignment location	CM002470.1:537079..539029 +

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Properties


Property Name	Value
Product	Ribosomal protein S4/S9
Orig transcript id	gnl\|cribi\|Naga_100857g1.6095.mrna
Orig protein id	gnl\|cribi\|Naga_100857g1.6095
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:537079..539029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100857g1	gene6903	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7140	rna7140-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23552.1	cds7123	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:537079..539029+
coding sequence from alignment at CM002470.1:537079..539029+

mRNA sequence

>rna7140 ID=rna7140|Name=rna7140|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp
CGACCACGACATGAAGGATTTCAATAAGTTGTGTGTGCGCAATAGAGATA
ATGGTGTCGCAGGCCTGAAATTAGGATTTGCATGGCAGACGCGAAAAAAC
GCTGCACAGACCTCCCCAACTGCGAGAGTATCCCTCAGCATTACCGCATG
CTGTAGGTTGGAACATGTTGGTCCGACTCACCCTTTGCCATGACCTTCAT
TTTTTCGACTCTCTCTTCACGTAGAGTAGGATGCGGCAATTGCGGCACCA
CGAGCAAAAACTGCTGAAGAAGGTCGATTTCCTGCAATGGAAGAGTGACC
AGAACATCCGAGAAATCAAAATATTGCGGCGCTACCACATCCAGGATCGG
GAGGACTATGTCAAGTATAACAAAATTTGTGGGCATATCACCAAGTTGAC
GGCTAAGCTGAAGGATCTGAAACCGGAGGATGAGTTCCGGATCAAGATGA
CAGATGATCTCCTGTCGAAGCTCTACAACATGGGCTTAATCCCGACAAAG
AAGTCCTTGAGCCAGTGCGAGACCCTGGCCGCCTCTGCCTTTTGCCGTCG
CCGCTTGCCGGTGGTGATGGTGCGGATGAAGATGGCGGAGACATTAAAGG
AGGCGGTTACTTTCATCGAACAGGGCCACGTCCGGGTCGGCCCCACAGGT
AGGGGGAAATGAGGGGTTGAGGCGGGGGAGGAGGAGCTAAGGGAGGGGGA
GAGGGGGCCGATGAGAGGCTGCGGAGAAATCGTGGGCGTTGGCAGGTCTT
TGGCCGGGGCGCTGGCGGCCACAGGGAAGGGGAGAGGAGGGGGGGGGCCT
GGTTGTCTTTGCGTCGCCCGTGCGGGTTCTCCTTGCCAGCCGCCGGGCTG
TGCCTCGCGCCCTGCACCCTGCCCCTCCTCCTCCGTCAGGGTCACTTTCC
TCTTTCCCTCATCCTTCCCACAGTTGTCACCGACCCGACCTTCCTTGTGA
CCCGGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAAGATCAAG
CGGGCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACCTGCTGGG
AAATTGAGACATTAAATGCCGTCGCGGGGCCATGATTGTGGGTGGTTGGG
GGCTTTCGGGGTGGGGAGAAGTGGGATCTGGCGGGCTGCGTCCAGGAGGG
GCGCCGGGGGAAGGAGGCATTACTACAAGGAGGAGGTAGAGACTGGCGCC
TAGACAGCACAGAATGAGGTCCCTGTGGATTCTTTTCTTTGGATCGGCCC
ACTTCCACTCGTTTCACAATGCTCCGGGGGGGTTGTGTAAGGGGGAATAC
GTGGCGGGCGCGCTGCTGTTTGTGCATAAATTGTGTGAGCCTGGAAAGTA
AATATTTAAAAAATGTATCCAACCGAAAGCGCCACCCGCGGTCTATTTGG
AGTGAAAGCCTGAGAAATCACAGAAGTCGCTATGTTTTCAGTCC

protein sequence of rna7140

>rna7140-protein ID=rna7140-protein|Name=rna7140|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKIC
GHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLA
ASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTR
SQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN

mRNA from alignment at CM002470.1:537079..539029+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7140 ID=rna7140|Name=rna7140|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp|location=Sequence derived from alignment at CM002470.1:537079..539029+ (Nannochloropsis gaditana)
CGACCACGACATGAAGGATTTCAATAAGTTGTGTGTGCGCAATAGAGATA
ATGGTGTCGCAGGCCTGAAATTAGGATTTGCATGGCAGACGCGAAAAAAC
GCTGCACAGACCTCCCCAACTGCGAGAGTATCCCTCAGCATTACCGCATG
CTGTAGGTTGGAACATGTTGGTCCGACTCACCCTTTGCCATGACCTTCAT
TTTTTCGACTCTCTCTTCACGTAGAGTAGGATGCGGCAATTGCGGCACCA
CGAGCAAAAACTGCTGAAGAAGGTCGATTTCCTGCAATGGAAGAGTGACC
AGAACATCCGAGAAATCAAAATATTGCGGCGCTACCACATCCAGGATCGG
GAGGACTATGTCAAGTAAGCAAGAAACAAGCCGAAGGCTTTGTACATGGT
GTAGAGATGAGGGCAATTGCGGAACCTAACGTGTGACGCTAAATGTCGAG
GCCGTGGCTGCATCATTGGCTACCGTGTTAGGTTATCCGTCCATAGTTTC
TCCCGGTTCACTGTCTCCTTTTGCCGAATTCTTGTCACTTTTTCTTGATA
GGTATAACAAAATTTGTGGGCATATCACCAAGTTGACGGCTAAGCTGAAG
GATCTGAAACCGGAGGATGAGTTCCGGATCAAGATGACAGATGATGTAAG
GATACGaagtgaggagaaagggatggtgagattggaagggggagatgagG
CTTACTGATTAAGAATGGTGATTCAAAGTGAACAAAGTTGAGAACAGGCT
GCATGGAATGTATGGAGAAGAATGTACTTGATGATGGACGAGTCGACGGA
atgaggtggaaggggcatAGATGTGAAGATATTCCTCAAAGGGAGGCCCA
GGCACCCAAACACACGCTTCAAGGCTAGAGATGTACCGACCAGGAGGGAA
GTTTTAAATCCCCACGATGAACATGGCGAGCCTGACCATAGcatgcccct
ttcccccctctccagctCCTGTCGAAGCTCTACAACATGGGCTTAATCCC
GACAAAGAAGTCCTTGAGCCAGTGCGAGACCCTggccgcctctgcctttt
GCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGATGAAGATGGCGGAGACA
TTAAAGGAGGCGGTTACTTTCATCGAACAGGGCCACGTCCGGGTCGGCCC
CACAGGTagggggaaatgaggggttgaggcgggggaggaggagctaaggg
agggggagagggggccgaTGAGAGGCTGCGGAGAAATCGTGGGCGTTGGC
AGGTCTTTGGCCGGGGCGCTGGCGGCcacagggaaggggagaggaggggg
ggggcctGGTTGTCTTTGCGTCGCCCGTGCGGGTTCTCCTTGCCAGCCGC
CGGGCTGTGCCTCGCGCCCTGcaccctgcccctcctcctccgtcagggtc
actttcctctttccctcatccttcccACAGTTGTCACCGACCCGACCTTC
CTTGTGACCCGGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAA
GATCAAGCGGGCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACC
TGCTGGGAAATTGAGACATTAAATGCCGTCGCGGGGCCATGATTGTGGGT
GGTTGGGGGCTTtcggggtggggagaagTGGGATCTGGCGGGCTGCGTCC
AGgaggggcgccgggggaaggaggcattactacaaggaggaggtagagac
TGGCGCCTAGACAGCACAGAATGAGGTCCCTGTGGATTCTTTTCTTTGGA
TCGGCCCACTTCCACTCGTTTCACAATGCTCCGGGGGGGTTGTGTAAGGG
GGAATACGTGGCGGGCGCGCTGCTGTTTGTGCATAAATTGTGTGAGCCTG
GAAAGTAAATATTTAAAAAATGTATCCAACCGAAAGCGCCACCCGCGGTC
TATTTGGAGTGAAAGCCTGAGAAATCACAGAAGTCGCTATGTTTTCAGTC
C

Coding sequence (CDS) from alignment at CM002470.1:537079..539029+

>rna7140 ID=rna7140|Name=rna7140|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at CM002470.1:537079..539029+ (Nannochloropsis gaditana)
ATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTGAAGAAGGTCGATTT
CCTGCAATGGAAGAGTGACCAGAACATCCGAGAAATCAAAATATTGCGGC
GCTACCACATCCAGGATCGGGAGGACTATGTCAAGTATAACAAAATTTGT
GGGCATATCACCAAGTTGACGGCTAAGCTGAAGGATCTGAAACCGGAGGA
TGAGTTCCGGATCAAGATGACAGATGATctCCTGTCGAAGCTCTACAACA
TGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGTGCGAGACCCTggcc
gcctctgccttttGCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGATGAA
GATGGCGGAGACATTAAAGGAGGCGGTTACTTTCATCGAACAGGGCCACG
TCCGGGTCGGCCCCACAGTTGTCACCGACCCGACCTTCCTTGTGACCCGG
AGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAAGATCAAGCGGGC
CGTGGTGGCGTACAACGACAAATTGGACGACTTTGACCTGCTGGGAAATT
GAATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTGAAGAAGGTCGAT
TTCCTGCAATGGAAGAGTGACCAGAACATCCGAGAAATCAAAATATTGCG
GCGCTACCACATCCAGGATCGGGAGGACTATGTCAAGTATAACAAAATTT
GTGGGCATATCACCAAGTTGACGGCTAAGCTGAAGGATCTGAAACCGGAG
GATGAGTTCCGGATCAAGATGACAGATGATctCCTGTCGAAGCTCTACAA
CATGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGTGCGAGACCCTgg
ccgcctctgccttttGCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGATG
AAGATGGCGGAGACATTAAAGGAGGCGGTTACTTTCATCGAACAGGGCCA
CGTCCGGGTCGGCCCCACAGTTGTCACCGACCCGACCTTCCTTGTGACCC
GGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAAGATCAAGCGG
GCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACCTGCTGGGAAA
TTGAATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTGAAGAAGGTCG
ATTTCCTGCAATGGAAGAGTGACCAGAACATCCGAGAAATCAAAATATTG
CGGCGCTACCACATCCAGGATCGGGAGGACTATGTCAAGTATAACAAAAT
TTGTGGGCATATCACCAAGTTGACGGCTAAGCTGAAGGATCTGAAACCGG
AGGATGAGTTCCGGATCAAGATGACAGATGATctCCTGTCGAAGCTCTAC
AACATGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGTGCGAGACCCT
ggccgcctctgccttttGCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGA
TGAAGATGGCGGAGACATTAAAGGAGGCGGTTACTTTCATCGAACAGGGC
CACGTCCGGGTCGGCCCCACAGTTGTCACCGACCCGACCTTCCTTGTGAC
CCGGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAAGATCAAGC
GGGCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACCTGCTGGGA
AATTGAATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTGAAGAAGGT
CGATTTCCTGCAATGGAAGAGTGACCAGAACATCCGAGAAATCAAAATAT
TGCGGCGCTACCACATCCAGGATCGGGAGGACTATGTCAAGTATAACAAA
ATTTGTGGGCATATCACCAAGTTGACGGCTAAGCTGAAGGATCTGAAACC
GGAGGATGAGTTCCGGATCAAGATGACAGATGATctCCTGTCGAAGCTCT
ACAACATGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGTGCGAGACC
CTggccgcctctgccttttGCCGTCGCCGCTTGCCGGTGGTGATGGTGCG
GATGAAGATGGCGGAGACATTAAAGGAGGCGGTTACTTTCATCGAACAGG
GCCACGTCCGGGTCGGCCCCACAGTTGTCACCGACCCGACCTTCCTTGTG
ACCCGGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAAGATCAA
GCGGGCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACCTGCTGG
GAAATTGA

Synonyms

Publications