EWM23552.1, cds7123 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|553182606|ref|XP_005853756.1| (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|422295305|gb|EKU22604.1| U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|585104670|gb|EWM23552.1| Ribosomal protein S4/S9 [Nannochloropsis gaditana]) HSP 1 Score: 379.022 bits (972), Expect = 3.924e-133 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|585104671|gb|EWM23553.1| (Ribosomal protein S4/S9 [Nannochloropsis gaditana]) HSP 1 Score: 289.271 bits (739), Expect = 3.178e-98 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT
Sbjct: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|298708363|emb|CBJ48426.1| (small nucleolar ribonucleoprotein U3 component [Ectocarpus siliculosus]) HSP 1 Score: 289.656 bits (740), Expect = 8.114e-98 Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L DEFRIKMT+ LL KL+ MG+I TKKSL++ ET + S+FCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP VTDP FLVTRS EDF+TWVD SKIKRA+ Y DK+DDFDLLG
Sbjct: 1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|302848990|ref|XP_002956026.1| (hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis] >gi|300258752|gb|EFJ42986.1| hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis]) HSP 1 Score: 289.271 bits (739), Expect = 1.240e-97 Identity = 134/181 (74.03%), Postives = 159/181 (87.85%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
MRQL++HEQKLLKKVDFL+WKSD N+RE+++LRRYHIQDR+DY KYNKICG ITKLT+ LK L P+D RI++TD LL KLYNMG++PTKKSL QC+ LA +AFCRRRL VVMVR+KM+ETL+EA TFIEQGHVRVGP VTDP F VTR+ EDF+TWVD+SK+KR V+ YNDKLDD+DLL
Sbjct: 1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|857974999|emb|CEO98892.1| (hypothetical protein PBRA_007006 [Plasmodiophora brassicae]) HSP 1 Score: 283.493 bits (724), Expect = 2.586e-95 Identity = 132/183 (72.13%), Postives = 155/183 (84.70%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLGN 183
MRQL+HHEQ+LLKKVDFLQWK+DQ+ REI ILRRYHIQDREDYVKYN++CG I KL+ +L L P D FR K T+ LL KLYNMGLI +KKSLS C + AS+FCRRRLPVVMVR+KMAETL+EAVTFIE GHVRVGP VV DP L+TR+ EDF+TW D+SKIKR ++ Y+D+LDD+DLLGN
Sbjct: 1 MRQLKHHEQRLLKKVDFLQWKTDQSQREITILRRYHIQDREDYVKYNRLCGVIKKLSNQLLALDPRDPFRCKTTEHLLEKLYNMGLITSKKSLSLCANITASSFCRRRLPVVMVRIKMAETLREAVTFIEAGHVRVGPNVVNDPAMLITRTLEDFVTWTDTSKIKRHIMKYSDQLDDYDLLGN 183
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|909139616|gb|KNE64830.1| (hypothetical protein AMAG_10166 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 279.641 bits (714), Expect = 8.805e-94 Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
+RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L ++ L D F+ TD LL+KLYNMG +PTKK+LSQCE + SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP VVTDP FLVTR+ EDF+TWVD+SKIKR ++ YNDKLDDFDLL
Sbjct: 2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKMTVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|909138045|gb|KNE63619.1| (ribosomal protein S4 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 279.256 bits (713), Expect = 1.197e-93 Identity = 125/181 (69.06%), Postives = 154/181 (85.08%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
+RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L ++ L D F+ TD LL+KLYNMG +PTKK+LSQCE + SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP VVTDP FLVTR+ EDF+TWVD+SKIKR ++ YNDKLDDFDLL
Sbjct: 2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|971507548|dbj|GAQ90652.1| (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Klebsormidium nitens]) HSP 1 Score: 278.1 bits (710), Expect = 3.581e-93 Identity = 124/182 (68.13%), Postives = 158/182 (86.81%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
MR+L+ HEQKLLKKVDFLQWK++ N+RE++ +R+YHI DR+DY KYNK+CG +TKLT+ LK L P+D FRI++TD LL KLYNMG+IPT+KSL+ C+ L+ S+FCRRRL V++VR+K AET++EAVTF+EQGH+RVGP VTDP FLV R+ EDF+TWVD+SKIKR V+ YNDKLDD+DLLG
Sbjct: 1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFCRRRLAVMLVRLKFAETMREAVTFVEQGHIRVGPETVTDPAFLVVRNMEDFVTWVDTSKIKRKVLKYNDKLDDYDLLG 182
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|159490712|ref|XP_001703317.1| (small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii] >gi|158280241|gb|EDP05999.1| small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii]) HSP 1 Score: 277.33 bits (708), Expect = 5.198e-93 Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
MRQL+HHEQKLLKKVDFL+WKSD N+RE++++RRYHIQDR+DY KYNKI G +TKLT+ LK L +D R+++TD LL KL+ MG+IPTKKSL QC+ L ++FCRRRL VVMVR+KMAETL+EA TFIEQGHVRVGP VTDP F VTR+ EDF+TWVD+SK+KR V+ YNDKLDD+DLL
Sbjct: 1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
BLAST of EWM23552.1 vs. NCBI_GenBank
Match: gi|551659837|ref|XP_005832687.1| (hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712] >gi|428176824|gb|EKX45707.1| hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712]) HSP 1 Score: 275.018 bits (702), Expect = 5.737e-92 Identity = 128/181 (70.72%), Postives = 155/181 (85.64%), Query Frame = 0
Query: 1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLL 181
MRQL++HE+KLLKKV+F QWKSD+N+REI+ILRRY +Q+R+DY KYNKI G ITKLT+KLK+L+ +D R+K T+ L+ KLYNMGLI TKKSL QCE + SAFCRRRLPVV+VR+K E LKEAVTF+EQGH+R+GP VVTDP F VTRS EDF+TWVDSSKI+R V+ YND +DDFDLL
Sbjct: 1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLL 181 The following BLAST results are available for this feature:
BLAST of EWM23552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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