rna7139, rna7139 (mRNA) Nannochloropsis gaditana

Overview
Namerna7139
Unique Namerna7139
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length255
Alignment locationCM002470.1:537079..539029 +

Link to JBrowse

Properties
Property NameValue
ProductRibosomal protein S4/S9
Orig transcript idgnl|cribi|Naga_100857g1.6096.mrna
Orig protein idgnl|cribi|Naga_100857g1.6096
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:537079..539029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100857g1gene6903Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7139rna7139-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23553.1cds7122Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7139 ID=rna7139|Name=rna7139|organism=Nannochloropsis gaditana|type=mRNA|length=255bp
ATGCTTCCTGTTCCTGACCATATTGCTTTTCACCAGCCACAAATTCCTCT
TCTAACCTCTAATCAATCTTCCTATCTGTTGTTGCACCGGCTGTATTCTC
TTCTCGCTATCTCCCCCCCCCCCTCCTTCAACACATCTACTCATAGAGTC
GCATACATCTGTATGAAGAGGTTTCCTAATCATAAATTGTCATCCCACTC
ATTCCCTCCATTTTCTTGCACCCCATTCGGAATATTCTCACCGTTTCCTT
CCTAG
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protein sequence of rna7139

>rna7139-protein ID=rna7139-protein|Name=rna7139|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKIC
GHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLA
ASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK
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mRNA from alignment at CM002470.1:537079..539029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7139 ID=rna7139|Name=rna7139|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp|location=Sequence derived from alignment at CM002470.1:537079..539029+ (Nannochloropsis gaditana)
CGACCACGACATGAAGGATTTCAATAAGTTGTGTGTGCGCAATAGAGATA
ATGGTGTCGCAGGCCTGAAATTAGGATTTGCATGGCAGACGCGAAAAAAC
GCTGCACAGACCTCCCCAACTGCGAGAGTATCCCTCAGCATTACCGCATG
CTGTAGGTTGGAACATGTTGGTCCGACTCACCCTTTGCCATGACCTTCAT
TTTTTCGACTCTCTCTTCACGTAGAGTAGGATGCGGCAATTGCGGCACCA
CGAGCAAAAACTGCTGAAGAAGGTCGATTTCCTGCAATGGAAGAGTGACC
AGAACATCCGAGAAATCAAAATATTGCGGCGCTACCACATCCAGGATCGG
GAGGACTATGTCAAGTAAGCAAGAAACAAGCCGAAGGCTTTGTACATGGT
GTAGAGATGAGGGCAATTGCGGAACCTAACGTGTGACGCTAAATGTCGAG
GCCGTGGCTGCATCATTGGCTACCGTGTTAGGTTATCCGTCCATAGTTTC
TCCCGGTTCACTGTCTCCTTTTGCCGAATTCTTGTCACTTTTTCTTGATA
GGTATAACAAAATTTGTGGGCATATCACCAAGTTGACGGCTAAGCTGAAG
GATCTGAAACCGGAGGATGAGTTCCGGATCAAGATGACAGATGATGTAAG
GATACGaagtgaggagaaagggatggtgagattggaagggggagatgagG
CTTACTGATTAAGAATGGTGATTCAAAGTGAACAAAGTTGAGAACAGGCT
GCATGGAATGTATGGAGAAGAATGTACTTGATGATGGACGAGTCGACGGA
atgaggtggaaggggcatAGATGTGAAGATATTCCTCAAAGGGAGGCCCA
GGCACCCAAACACACGCTTCAAGGCTAGAGATGTACCGACCAGGAGGGAA
GTTTTAAATCCCCACGATGAACATGGCGAGCCTGACCATAGcatgcccct
ttcccccctctccagctCCTGTCGAAGCTCTACAACATGGGCTTAATCCC
GACAAAGAAGTCCTTGAGCCAGTGCGAGACCCTggccgcctctgcctttt
GCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGATGAAGATGGCGGAGACA
TTAAAGGAGGCGGTTACTTTCATCGAACAGGGCCACGTCCGGGTCGGCCC
CACAGGTagggggaaatgaggggttgaggcgggggaggaggagctaaggg
agggggagagggggccgaTGAGAGGCTGCGGAGAAATCGTGGGCGTTGGC
AGGTCTTTGGCCGGGGCGCTGGCGGCcacagggaaggggagaggaggggg
ggggcctGGTTGTCTTTGCGTCGCCCGTGCGGGTTCTCCTTGCCAGCCGC
CGGGCTGTGCCTCGCGCCCTGcaccctgcccctcctcctccgtcagggtc
actttcctctttccctcatccttcccACAGTTGTCACCGACCCGACCTTC
CTTGTGACCCGGAGCCAAGAGGATTTCCTGACGTGGGTGGATAGCTCCAA
GATCAAGCGGGCCGTGGTGGCGTACAACGACAAATTGGACGACTTTGACC
TGCTGGGAAATTGAGACATTAAATGCCGTCGCGGGGCCATGATTGTGGGT
GGTTGGGGGCTTtcggggtggggagaagTGGGATCTGGCGGGCTGCGTCC
AGgaggggcgccgggggaaggaggcattactacaaggaggaggtagagac
TGGCGCCTAGACAGCACAGAATGAGGTCCCTGTGGATTCTTTTCTTTGGA
TCGGCCCACTTCCACTCGTTTCACAATGCTCCGGGGGGGTTGTGTAAGGG
GGAATACGTGGCGGGCGCGCTGCTGTTTGTGCATAAATTGTGTGAGCCTG
GAAAGTAAATATTTAAAAAATGTATCCAACCGAAAGCGCCACCCGCGGTC
TATTTGGAGTGAAAGCCTGAGAAATCACAGAAGTCGCTATGTTTTCAGTC
C
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Coding sequence (CDS) from alignment at CM002470.1:537079..539029+

>rna7139 ID=rna7139|Name=rna7139|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002470.1:537079..539029+ (Nannochloropsis gaditana)
ATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTGAAGAAGGTCGATTT
CCTGCAATGGAAGAGTGACCAGAACATCCGAGAAATCAAAATATTGCGGC
GCTACCACATCCAGGATCGGGAGGACTATGTCAAGTATAACAAAATTTGT
GGGCATATCACCAAGTTGACGGCTAAGCTGAAGGATCTGAAACCGGAGGA
TGAGTTCCGGATCAAGATGACAGATGATctCCTGTCGAAGCTCTACAACA
TGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGTGCGAGACCCTggcc
gcctctgccttttGCCGTCGCCGCTTGCCGGTGGTGATGGTGCGGATGAA
GATGGCGGAGACATTAAAGGAGGCGGTTACTTTCATCGAACAGGGCCACG
TCCGGGTCGGCCCCACAGGTagggggaaatgaATGCGGCAATTGCGGCAC
CACGAGCAAAAACTGCTGAAGAAGGTCGATTTCCTGCAATGGAAGAGTGA
CCAGAACATCCGAGAAATCAAAATATTGCGGCGCTACCACATCCAGGATC
GGGAGGACTATGTCAAGTATAACAAAATTTGTGGGCATATCACCAAGTTG
ACGGCTAAGCTGAAGGATCTGAAACCGGAGGATGAGTTCCGGATCAAGAT
GACAGATGATctCCTGTCGAAGCTCTACAACATGGGCTTAATCCCGACAA
AGAAGTCCTTGAGCCAGTGCGAGACCCTggccgcctctgccttttGCCGT
CGCCGCTTGCCGGTGGTGATGGTGCGGATGAAGATGGCGGAGACATTAAA
GGAGGCGGTTACTTTCATCGAACAGGGCCACGTCCGGGTCGGCCCCACAG
GTagggggaaatgaATGCGGCAATTGCGGCACCACGAGCAAAAACTGCTG
AAGAAGGTCGATTTCCTGCAATGGAAGAGTGACCAGAACATCCGAGAAAT
CAAAATATTGCGGCGCTACCACATCCAGGATCGGGAGGACTATGTCAAGT
ATAACAAAATTTGTGGGCATATCACCAAGTTGACGGCTAAGCTGAAGGAT
CTGAAACCGGAGGATGAGTTCCGGATCAAGATGACAGATGATctCCTGTC
GAAGCTCTACAACATGGGCTTAATCCCGACAAAGAAGTCCTTGAGCCAGT
GCGAGACCCTggccgcctctgccttttGCCGTCGCCGCTTGCCGGTGGTG
ATGGTGCGGATGAAGATGGCGGAGACATTAAAGGAGGCGGTTACTTTCAT
CGAACAGGGCCACGTCCGGGTCGGCCCCACAGGTagggggaaatga
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Synonyms
Publications