EWM23553.1, cds7122 (CDS) Nannochloropsis gaditana

Overview
NameEWM23553.1
Unique Namecds7122
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:537309..537442 +
Alignment locationCM002470.1:537630..537723 +
Alignment locationCM002470.1:538044..538247 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23553.1
ProductRibosomal protein S4/S9
Orig transcript idgnl|cribi|Naga_100857g1.6096.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:537309..537442 +
CM002470.1supercontigCM002470.1:537630..537723 +
CM002470.1supercontigCM002470.1:538044..538247 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005840ribosome
GO:0005829cytosol
GO:0005739mitochondrion
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0019843rRNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR022801Ribosomal_S4/S9
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
Homology
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|585104671|gb|EWM23553.1| (Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 296.975 bits (759), Expect = 5.714e-102
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK 143
            MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTGRGK 143          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|553182606|ref|XP_005853756.1| (U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|422295305|gb|EKU22604.1| U3 small nucleolar ribonucleoprotein IMP3 [Nannochloropsis gaditana CCMP526] >gi|585104670|gb|EWM23552.1| Ribosomal protein S4/S9 [Nannochloropsis gaditana])

HSP 1 Score: 289.271 bits (739), Expect = 2.483e-98
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
            MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|302848990|ref|XP_002956026.1| (hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis] >gi|300258752|gb|EFJ42986.1| hypothetical protein VOLCADRAFT_76931 [Volvox carteri f. nagariensis])

HSP 1 Score: 225.713 bits (574), Expect = 3.485e-73
Identity = 104/138 (75.36%), Postives = 123/138 (89.13%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            MRQL++HEQKLLKKVDFL+WKSD N+RE+++LRRYHIQDR+DY KYNKICG ITKLT+ LK L P+D  RI++TD LL KLYNMG++PTKKSL QC+ LA +AFCRRRL VVMVR+KM+ETL+EA TFIEQGHVRVGP
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGP 138          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|298708363|emb|CBJ48426.1| (small nucleolar ribonucleoprotein U3 component [Ectocarpus siliculosus])

HSP 1 Score: 220.705 bits (561), Expect = 3.393e-71
Identity = 103/138 (74.64%), Postives = 122/138 (88.41%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            MR+L++HEQKLLKKVDFLQWKSDQNIREI++LRRY +Q+R+DYVKYNKI G ITKLTA+LK L   DEFRIKMT+ LL KL+ MG+I TKKSL++ ET + S+FCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGP 138          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|857974999|emb|CEO98892.1| (hypothetical protein PBRA_007006 [Plasmodiophora brassicae])

HSP 1 Score: 219.164 bits (557), Expect = 1.472e-70
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPT 139
            MRQL+HHEQ+LLKKVDFLQWK+DQ+ REI ILRRYHIQDREDYVKYN++CG I KL+ +L  L P D FR K T+ LL KLYNMGLI +KKSLS C  + AS+FCRRRLPVVMVR+KMAETL+EAVTFIE GHVRVGP 
Sbjct:    1 MRQLKHHEQRLLKKVDFLQWKTDQSQREITILRRYHIQDREDYVKYNRLCGVIKKLSNQLLALDPRDPFRCKTTEHLLEKLYNMGLITSKKSLSLCANITASSFCRRRLPVVMVRIKMAETLREAVTFIEAGHVRVGPN 139          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|159490712|ref|XP_001703317.1| (small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii] >gi|158280241|gb|EDP05999.1| small nucleolar ribonucleoprotein U3 component [Chlamydomonas reinhardtii])

HSP 1 Score: 213.386 bits (542), Expect = 2.762e-68
Identity = 98/138 (71.01%), Postives = 119/138 (86.23%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            MRQL+HHEQKLLKKVDFL+WKSD N+RE++++RRYHIQDR+DY KYNKI G +TKLT+ LK L  +D  R+++TD LL KL+ MG+IPTKKSL QC+ L  ++FCRRRL VVMVR+KMAETL+EA TFIEQGHVRVGP
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGP 138          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|971507548|dbj|GAQ90652.1| (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Klebsormidium nitens])

HSP 1 Score: 209.534 bits (532), Expect = 6.982e-67
Identity = 92/138 (66.67%), Postives = 121/138 (87.68%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            MR+L+ HEQKLLKKVDFLQWK++ N+RE++ +R+YHI DR+DY KYNK+CG +TKLT+ LK L P+D FRI++TD LL KLYNMG+IPT+KSL+ C+ L+ S+FCRRRL V++VR+K AET++EAVTF+EQGH+RVGP
Sbjct:    1 MRKLKFHEQKLLKKVDFLQWKNEHNLREVQAMRQYHITDRDDYKKYNKLCGMVTKLTSILKKLDPQDPFRIELTDQLLEKLYNMGVIPTRKSLALCDKLSTSSFCRRRLAVMLVRLKFAETMREAVTFVEQGHIRVGP 138          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|909139616|gb|KNE64830.1| (hypothetical protein AMAG_10166 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 208.764 bits (530), Expect = 1.407e-66
Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            +RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LL+KLYNMG +PTKK+LSQCE +  SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKMTVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGP 139          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|909138045|gb|KNE63619.1| (ribosomal protein S4 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 208.764 bits (530), Expect = 1.622e-66
Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            +RQL+HHEQKLLKKVDFLQWK++ N+REI+++RRYHIQ REDY KYN++CG I +L  ++  L   D F+   TD LL+KLYNMG +PTKK+LSQCE +  SA CRRRLP+VMVR+KMAET++EAVTF+EQGH+RVGP
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGP 139          
BLAST of EWM23553.1 vs. NCBI_GenBank
Match: gi|551659837|ref|XP_005832687.1| (hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712] >gi|428176824|gb|EKX45707.1| hypothetical protein GUITHDRAFT_138906 [Guillardia theta CCMP2712])

HSP 1 Score: 208.379 bits (529), Expect = 2.353e-66
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 0
Query:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGP 138
            MRQL++HE+KLLKKV+F QWKSD+N+REI+ILRRY +Q+R+DY KYNKI G ITKLT+KLK+L+ +D  R+K T+ L+ KLYNMGLI TKKSL QCE +  SAFCRRRLPVV+VR+K  E LKEAVTF+EQGH+R+GP
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGP 138          
The following BLAST results are available for this feature:
BLAST of EWM23553.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104671|gb|EWM23553.1|5.714e-102100.00Ribosomal protein S4/S9 [Nannochloropsis gaditana][more]
gi|553182606|ref|XP_005853756.1|2.483e-98100.00U3 small nucleolar ribonucleoprotein IMP3 [Nannoch... [more]
gi|302848990|ref|XP_002956026.1|3.485e-7375.36hypothetical protein VOLCADRAFT_76931 [Volvox cart... [more]
gi|298708363|emb|CBJ48426.1|3.393e-7174.64small nucleolar ribonucleoprotein U3 component [Ec... [more]
gi|857974999|emb|CEO98892.1|1.472e-7074.82hypothetical protein PBRA_007006 [Plasmodiophora b... [more]
gi|159490712|ref|XP_001703317.1|2.762e-6871.01small nucleolar ribonucleoprotein U3 component [Ch... [more]
gi|971507548|dbj|GAQ90652.1|6.982e-6766.67Alpha-L RNA-binding motif/Ribosomal protein S4 fam... [more]
gi|909139616|gb|KNE64830.1|1.407e-6666.67hypothetical protein AMAG_10166 [Allomyces macrogy... [more]
gi|909138045|gb|KNE63619.1|1.622e-6666.67ribosomal protein S4 [Allomyces macrogynus ATCC 38... [more]
gi|551659837|ref|XP_005832687.1|2.353e-6669.57hypothetical protein GUITHDRAFT_138906 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7139rna7139Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications