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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF2039 |
| Orig transcript id | gnl|cribi|Naga_100139g4.4742.mrna |
| Orig protein id | gnl|cribi|Naga_100139g4.4742 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:425434..427137 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7092 ID=rna7092|Name=rna7092|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp
CACTTTGACACTTCCGCCCCCGACGCTGACACGTTCTGCGTAGAATGACA
CGTAAATATGGCCGTCTTTCAGGAAGCATAGTCCAGGAGGGGGTGGCCTC
AGAACGCGTGGGGTGTATTAAACGGGCCTCAGTGATCGACTTTGCGTCGC
GTGGCGCCTAGATGGCCACGTCAGCAAACATAGACGTGATACCAAAGGGT
TGGATATTTTATGTCACGTGGCTGTGGAAAGGCGCCTTCAAGCGACCTCG
CACTCTTACTTTGTGAGCCTTGGTCCCCGCAGTGGATAGCACGCATGTGT
CTTTTGCCTTCTTCCGTAGCCCAATTCGTACAAAGGGGCTGAAATTGTGG
GCCATTCTGGATAGGGGTTCTTGGGAGGATGACCTCCCACCCTACTGCTT
GTACTGAAGCACAGGTTATGAGCGGGCAACGTCGTCGAGGACCTGCGCAC
CAGAATACATTCGCGTTTCGACACAATCCCAAGAGCAAGAAAACCGAGCG
CATCCTAGCGTCTCCGATTGAGGGTCTCTGTCACCGATGCCATGAAAAAG
TAGAATGGCGAAAAAAATATAGGAAATACAAGCCACTTAGCGCCCCTGCA
ACATGCACCGGCTGTCACACCAAGAGTGTCCGTGCGGCGTACCACCAAAT
TTGTGACCCGTGCGCTGAAAAGCGCGCCGTCTGCGCAGGTTGCGCTGAGC
CCAAGTCGATTGTCAAGAAGACAGGAGCGGCTGCAGAAAAGGACGTGGAG
GAGAAGCGCCGGGCGTTAGAGAGAGACATAAAAGGGTTACATTTGCGAAA
GCAGCGCAAAATTCTGAGAGAATTTGATCGGTCGGGCGGAGATATGGATG
TGGAAGGTGCTATGGAGGCGGTGGGATCGGACCTCGATGACGACGAAATA
GGAGATAGCGACGACAAAGAATATGATGAGGATTCGGAAAGAGAGTGAGG
GAGCGAGATATGGGGCAGGAGGGAAGGAATGGACGCCTCAAATGCGGAAA
GTGTTGAGCATTGTGTTTAAAGGACGAGGGCTGAAAGGACGAGGGCTGAG
AGTATACACCTAGACTAGAACTTGTAATTAAACGGCTGAAAGTATCATCA
AATGAGGCGATCTCTATGTTGAAAATGTCGATTGTAGATCCAGGGAGGAT
GACGACCACCTCTTGAAGGCACACGTGGTATCGAATTGTTACATTCTTTT
TACAGGGTGTGTTGCCGGCATTATTAATGGAAGAAGACGTGGGATCAAAG
AACTATGCCTTCATGTGGTACCTGATCAAGGAGCCCACAGTTGGATACTA
CAGAGCTCTTCTTCCAAAAAGCTCTCCATGCAAGGGACCCCTTGACAAGC
CCAGGATTCATTCCTAAGAGACCTTCCGTGACAATCCATTATATGTCATA
TTCTAGCAATGTCAGTGGTTGGCCGAATGTCT back to topprotein sequence of rna7092 >rna7092-protein ID=rna7092-protein|Name=rna7092|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKK
YRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVK
KTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAME
AVGSDLDDDEIGDSDDKEYDEDSERE back to topmRNA from alignment at CM002470.1:425434..427137+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7092 ID=rna7092|Name=rna7092|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
caCTTTGACACTTCCGCCCCCGACGCTGACACGTTCTGCGTAGAATGACA
CGTAAATATGGCCGTCTTTCAGGAAGCATAGtccaggagggggtggccTC
AGAACGCGTGGGGTGTATTAAACGGGCCTCAGTGATCGACTTTGCGTCGC
GTGGCGCCTAGATGGCCACGTCAGCAAACATAGACGTGATACCAAAGGGT
TGGATATTTTATGTCACGTGGCTGTGGAAAGGCGCCTTCAAGCGACCTCG
CACTCTTACTTTGTGAGCCTTGGTCCCCGCAGTGGATAGCACGCATGTGT
CTTTTGCCTTCTTCCGTAGCCCAATTCGTACAAAGGGGCTGAAATTGTGG
GCCATTCTGGATAGGGGTTCTTGGGAGGATGACCTCCCACCCTACTGCTT
GTACTGAAGGTGAGAcatcccttcccaccatCAATTGTCAGCATGTTAGG
CTTATTTGTACGGTCATGGCACGATGCACGGCATCGATACATGCATATGA
CGATTTATCCCTTTTGTGTCGCGGATACACCGCATACGTCGATGTACCCT
CCACTTGACCTTCACCTCACGATGTCTACACTCCCACAAGCTGTCCCGCT
CTCATAAATACTCGCTTTGCTCCCCTATCACCTCCACCGACAAAACAATG
GGTCTGCCTGCCTATTGTTACACTCGTGCAGCACAGGTTATGAGCGGGCA
ACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTTTCGACACAATC
CCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGATTGAGGGTCTC
TGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAATATAGGAAATA
CAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCACACCAAGAGTG
TCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTGAAAAGCGCGCC
GTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAGAAGACAGGAGC
GGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTTAGAGAGAGACA
TAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGAGAGAATTTGAT
CGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggaggcggtgggatC
GGACCTCGATGACGACGAAATAGGAGATAGCGACGACAAAGAATATGATG
AGGATTCGGAAAGAGAGTGAGGGAGCGAGAtatggggcaggagggaagga
atggacgCCTCAAATGCGGAAAGTGTTGAGCATTGTGTTTAAAGGACGAG
GGCTGAAAGGACGAGGGCTGAGAGTATACACCTAGACTAGAACTTGTAAT
TAAACGGCTGAAAGTATCATCAAATGAGGCGATCTCTATGTTGAAAATGT
CGATTGTAGATccagggaggatgacgaccaCCTCTTGAAGGCACACGTGG
TATCGAATTGTTACATTCTTTTTACAGGGTGTGTTGCCGGCATTATTaat
ggaagaagacgtgggATCAAAGAACTATGCCTTCATGTGGTACCTGATCA
AGGAGCCCACAGTTGGATACTACAgagctcttcttccaaaaagCTCTCCA
TGCAAGGGACCCCTTGACAAGCCCAGGATTCATTCCTAAGAGACCTTCCG
TGACAATCCATTATATGTCATATTCTAGCAATGTCAGTGGTTGGCCGAat
gtct back to topCoding sequence (CDS) from alignment at CM002470.1:425434..427137+ >rna7092 ID=rna7092|Name=rna7092|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002470.1:425434..427137+ (Nannochloropsis gaditana)
ATGAGCGGGCAACGTCGTCGAGGACCTGCGCACCAGAATACATTCGCGTT
TCGACACAATCCCAAGAGCAAGAAAACCGAGCGCATCCTAGCGTCTCCGA
TTGAGGGTCTCTGTCACCGATGCCATGAAAAAGTAGAATGGCGAAAAAAA
TATAGGAAATACAAGCCACTTAGCGCCCCTGCAACATGCACCGGCTGTCA
CACCAAGAGTGTCCGTGCGGCGTACCACCAAATTTGTGACCCGTGCGCTG
AAAAGCGCGCCGTCTGCGCAGGTTGCGCTGAGCCCAAGTCGATTGTCAAG
AAGACAGGAGCGGCTGCAgaaaaggacgtggaggagaagcgccgGGCGTT
AGAGAGAGACATAAAAGGGTTACATTTGCGAAAGCAGCGCAAAATTCTGA
GAGAATTTGATCGGTCGGGCGGAGATATGGATGTGGAAGGTGCtatggag
gcggtgggatCGGACCTCGATGACGACGAAATAGGAGATAGCGACGACAA
AGAATATGATGAGGATTCGGAAAGAGAGTGA back to top
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