EWM23590.1, cds7075 (CDS) Nannochloropsis gaditana

Overview
NameEWM23590.1
Unique Namecds7075
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:426123..426653 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23590.1
ProductProtein of unknown function DUF2039
Orig transcript idgnl|cribi|Naga_100139g4.4742.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:426123..426653 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023155Cyt_c-552/4
IPR019351DUF2039
Homology
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|585104732|gb|EWM23591.1| (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 361.688 bits (927), Expect = 2.304e-126
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 176
            MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE
Sbjct:   14 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 189
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|585104731|gb|EWM23590.1| (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 360.533 bits (924), Expect = 4.359e-126
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 176
            MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE
Sbjct:    1 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 176
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|585104733|gb|EWM23592.1| (Protein of unknown function DUF2039 [Nannochloropsis gaditana])

HSP 1 Score: 360.918 bits (925), Expect = 4.461e-126
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 176
            MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE
Sbjct:   15 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 190
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|553190140|ref|XP_005855134.1| (hypothetical protein NGA_2024610, partial [Nannochloropsis gaditana CCMP526] >gi|553191168|ref|XP_005855332.1| hypothetical protein NGA_2024620, partial [Nannochloropsis gaditana CCMP526] >gi|422293727|gb|EKU21027.1| hypothetical protein NGA_2024620, partial [Nannochloropsis gaditana CCMP526] >gi|422293925|gb|EKU21225.1| hypothetical protein NGA_2024610, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 354.369 bits (908), Expect = 1.380e-123
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 0 
Query:    1 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSERE 176
            MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLC RCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDD IGDSDDKE+DEDSERE
Sbjct:    4 MSGQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCQRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDGIGDSDDKEHDEDSERE 179
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|675195143|ref|XP_008906456.1| (hypothetical protein PPTG_12019 [Phytophthora parasitica INRA-310] >gi|566023120|gb|ETI46031.1| hypothetical protein F443_09550 [Phytophthora parasitica P1569] >gi|567960438|gb|ETK85997.1| hypothetical protein L915_09344 [Phytophthora parasitica] >gi|567989156|gb|ETL39423.1| hypothetical protein L916_09250 [Phytophthora parasitica] >gi|568018374|gb|ETL92549.1| hypothetical protein L917_09183 [Phytophthora parasitica] >gi|568048812|gb|ETM45841.1| hypothetical protein L914_09209 [Phytophthora parasitica] >gi|568093372|gb|ETN08168.1| hypothetical protein PPTG_12019 [Phytophthora parasitica INRA-310] >gi|570950607|gb|ETP15864.1| hypothetical protein F441_09483 [Phytophthora parasitica CJ01A1] >gi|570984264|gb|ETP43917.1| hypothetical protein F442_09457 [Phytophthora parasitica P10297] >gi|970665168|gb|KUG01889.1| hypothetical protein AM587_10010604 [Phytophthora nicotianae])

HSP 1 Score: 153.295 bits (386), Expect = 2.708e-44
Identity = 83/182 (45.60%), Postives = 116/182 (63.74%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDV----EEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSE 174
            MS QR    +R P HQNTFAF+HNPKSKKT+RIL+ PI GLC +C +++EWRKKYRKYKPL+ P +C  CH K+V +AYH  CDPCA++R +CA C   K IV     A+E+++    E+K R  E  ++G+  R +R  LR+ ++     + E      G+D  +    +S D+E DED +
Sbjct:    1 MSSQRGNVKKRAPKHQNTFAFKHNPKSKKTDRILSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLTKEIV-----ASEQELLAEHEKKEREFENTLEGMRERDRRAYLRKLEK-----EKEAITNGEGADSAEVNGYESYDEE-DEDMQ 171
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|1214696527|gb|OWZ10027.1| (hypothetical protein PHMEG_00017186 [Phytophthora megakarya])

HSP 1 Score: 151.369 bits (381), Expect = 1.425e-43
Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDV----EEKRRALERDIKGLHLRKQRKILREFDR 138
            MS QR    +R P HQN FAF+HNPKSKKTERIL+ PI GLC +C  ++EWRKKYRKYKPL+ P +C  CH K+V +AYH  CDPCA++R +CA C   K +V     A+E+++    E+K R  E +++G+  R +R  LR+ ++
Sbjct:    1 MSSQRGNVKKRAPKHQNAFAFKHNPKSKKTERILSMPIHGLCEKCRAQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLKKEVV-----ASEQELLAEHEKKEREFENELEGMRERDRRAYLRKLEK 141
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|301120694|ref|XP_002908074.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103105|gb|EEY61157.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 150.599 bits (379), Expect = 3.503e-43
Identity = 78/178 (43.82%), Postives = 108/178 (60.67%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSE 174
            MS QR    +R P HQN FAF+HNPKS+KTERI++ PI GLC +C +++EWRKKYRKYKPL+ P +C  CH K+V +AYH  CDPCA++R +CA C   K IV +       + E+K R  E  ++G+  R +R  LR+ ++           EA+ +    D    +  + YDED E
Sbjct:    1 MSSQRGNVKKRAPKHQNAFAFKHNPKSRKTERIMSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLAKEIVARCQELL-AEHEKKEREFENTLEGMRERDRRAYLRKLEKEK---------EAITNRESVDSAEGNAYESYDEDDE 168
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|970645784|gb|KUF86154.1| (hypothetical protein AM588_10002932 [Phytophthora nicotianae])

HSP 1 Score: 149.443 bits (376), Expect = 1.246e-42
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAA---------AEKDV----EEKRRALERDIKGLHLRKQRKILREFDRSGGDMDVEGAMEAVGSDLDDDEIGDSDDKEYDEDSE 174
            MS QR    +R P HQNTFAF+HNPKSKKT+RIL+ PI GLC +C +++EWRKKYRKYKPL+ P +C  CH K+V +AYH  CDPCA++R +CA C   K IV +   +         +E+++    E+K R  E  ++G+  R +R  LR+ ++     + E      G+D  +    +S D+E DED +
Sbjct:    1 MSSQRGNVKKRAPKHQNTFAFKHNPKSKKTDRILSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLTKEIVARLLTSFWAIVAVVDSEQELLAEHEKKEREFENTLEGMRERDRRAYLRKLEK-----EKEAITNGEGADSAEVNGYESYDEE-DEDMQ 185
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|695413431|ref|XP_009526032.1| (hypothetical protein PHYSODRAFT_504062 [Phytophthora sojae] >gi|348677157|gb|EGZ16974.1| hypothetical protein PHYSODRAFT_504062 [Phytophthora sojae])

HSP 1 Score: 149.058 bits (375), Expect = 1.305e-42
Identity = 71/142 (50.00%), Postives = 96/142 (67.61%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILREFDR 138
            MS QR    +R P HQN FAF+HNPKSKKTERI++ PI GLC +C +++EWRKKYRKYKPL+ P +C  CH K+V +AYH  CDPCA++R +CA C   K IV +       + E+K R  E  ++G+  R +R  LR+ ++
Sbjct:    1 MSTQRGNVKKRAPKHQNAFAFKHNPKSKKTERIMSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCCLSKEIVARCQELL-AEHEKKEREFENQLEGMRERDRRAYLRKLEK 141
[Close]
BLAST of EWM23590.1 vs. NCBI_GenBank
Match: gi|673029152|ref|XP_008868537.1| (hypothetical protein H310_05572 [Aphanomyces invadans] >gi|574476154|gb|ETW03153.1| hypothetical protein H310_05572 [Aphanomyces invadans])

HSP 1 Score: 148.673 bits (374), Expect = 2.523e-42
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 0 
Query:    1 MSGQR----RRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAEPKSIVKKTGAAAEKDVEEKRRALERDIKGLHLRKQRKILRE 135
            MS QR    +  P +QN+FAF+HNPKSKKTE IL  PI GLC  CH ++ WRKKYRKYKPL+ PA+CT CH K++ +AYH +CDPCA+++ VCA C + + +V      AE+  EE++   E+ ++GL  R++RK+LR+
Sbjct:    1 MSSQRGNLKKGAPKYQNSFAFKHNPKSKKTEHILGLPIHGLCPHCHAQIVWRKKYRKYKPLTQPASCTSCHQKTIISAYHVLCDPCAKEKGVCAKCCKSEELVLSEQQLAEQKDEEQKDFSEQ-LEGLKERERRKVLRQ 138
The following BLAST results are available for this feature:
BLAST of EWM23590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104732|gb|EWM23591.1|2.304e-126100.00Protein of unknown function DUF2039 [Nannochlorops... [more]
gi|585104731|gb|EWM23590.1|4.359e-126100.00Protein of unknown function DUF2039 [Nannochlorops... [more]
gi|585104733|gb|EWM23592.1|4.461e-126100.00Protein of unknown function DUF2039 [Nannochlorops... [more]
gi|553190140|ref|XP_005855134.1|1.380e-12398.30hypothetical protein NGA_2024610, partial [Nannoch... [more]
gi|675195143|ref|XP_008906456.1|2.708e-4445.60hypothetical protein PPTG_12019 [Phytophthora para... [more]
gi|1214696527|gb|OWZ10027.1|1.425e-4350.00hypothetical protein PHMEG_00017186 [Phytophthora ... [more]
gi|301120694|ref|XP_002908074.1|3.503e-4343.82conserved hypothetical protein [Phytophthora infes... [more]
gi|970645784|gb|KUF86154.1|1.246e-4242.93hypothetical protein AM588_10002932 [Phytophthora ... [more]
gi|695413431|ref|XP_009526032.1|1.305e-4250.00hypothetical protein PHYSODRAFT_504062 [Phytophtho... [more]
gi|673029152|ref|XP_008868537.1|2.523e-4251.08hypothetical protein H310_05572 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7092rna7092Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications