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Properties
| Property Name | Value |
|---|
| Product | cdk-activating kinase assembly factor mat1 |
| Orig transcript id | gnl|cribi|Naga_100273g5.3655.mrna |
| Orig protein id | gnl|cribi|Naga_100273g5.3655 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:634826..636923 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6849 ID=rna6849|Name=rna6849|organism=Nannochloropsis gaditana|type=mRNA|length=1700bp
AGCGAAAACTGTTTGCATTGCATCCGGTATGCGTGAGTGCTTTATCTGCC
CAGTCTGACACGCCCTTCTGTTCAAACATTGTACATCCTGTGCTGATTCG
TCTTTTACCCGGGGGCAGGAAAATTACGCGGCATCGGAAGACCATCCACG
TACCCCTTGAGGTTGCTGCAGGTGTTTGCGATGGTAGGGCCTGCCAGAGA
GGGTAAAAATGGAAAGGTGGAAGAGGAAGACGACGAAATGACGGTGAAGT
GTGCGGCGTGCGAACAACGGGAGGATGCTTTGGACAATTTGAGCCGGAAA
CGTTTCAAGATCAATACATCCTGCGGGCATTATTTGTGAGGAGCTGGGGG
GGCGATAAGAGGGAGGGGGAGGGAACGAATCGGGGCAGCGGTTGACCCTA
GAAATAGCCCTAGACATATGTAGTTTGTGATATGCAAGGAAACGAACCAG
CGTGAAAGCAAGGTTGGAGGGAGACTAAATGTACAGTTATAAAGTCGATG
CTGGAGGCTCATGTTTTGTGCGTCCTTTCCCTCCTTCCCTCCCTCATTCC
CTCCTATTTCTCTTCCCACTCCCCAGTTGCGACACATGCATCCAGCGGGA
ATTTGCCCGAAAAACCCGTGGTGGCTTTCGTTGCCCTGCCTGCGCCCGGC
TTGGGAAGGACAGGGAGGTGCTGCGTCAGAGTTTAGAGACCAAGTCCCGG
GAGCAATTAATGGTGGAATTGGATACAAAATGGCGCGAACGAGTCTTGGA
GGTGTACGGAAAGAAGGAGGAGGACTTTGGGGGTAACGAGGATGCCTATA
ATGACTACATCGAGGAGCGGGAGGACCTGATCTATACACTGGCTAACCGG
CTCTTCATCGATGAGAACGAGGTGCGGGAGGCAGAAATCCGCCTGGAGAA
AGAACGCAAGACCAACGAGGTCGCCGTCGCTAGATATAGAGCCCGGCGGG
AAGAGGATCGACGGCGCTCCGCTCGAGCTGTGGAAAGCTTTGAACAAGAA
TGGGCCGAACAAGTCCGACGCGCACACGAGCAGGAGAAGCGCGAATTGGA
AAAATTGCGCGAATTTCGCTTGCAAATTCAACAGAAGAATTTGGGAGAGC
GCGATCAGGTGACGGTCGAACTAGTGGGCAGAGGCGGGGGAGGGAGGGCG
GATGGTGAGGAGGAAGAGGAAGACGAGGACGTGGCGCGGGCACTGGGGCG
AGAGGGAGGGAGGGGGGGAGGGTTGGAGGGAGGCGGGGCAGGAATGAGCG
GAGCGAGCGCTTTCTGTACCAATCTCCGCGTCCTGGTCGGGCCCCCCCCC
CGGATCGTGGTGGTGGAGGGAGGGCGGGAGACAGGAGGGGAGGGAGGGAA
GGAGGGCATTGCCAAGGCGAGCGGTTGGCCTTTGTCCCTGCGGTATAAAC
GGTGCTGGGAGGAGGCCATCGCGTCCTTGTTCTTGGGTTCGGGGGAAACG
AGGGGGAGGTTGGGGCGGACGTTTTATCGCTAGGTAGGGGAGGAGGGAGG
GAGAGGTGTCCGAGGGAGGAGGACGTGGACAGGGGAAACGCGAGAAGTTC
TTCTTGTAGCTCTTGGTGGGCCAGCTTTGCAATAGGGTGTTGGCGTCCGT
AGTGGCACGGTGTGAGGTCGTCGGTGAGATGCTCGCGGCCTTGTTTAGAA
CGGTAATGTTCGAATCAAGAACTTTGTGTATACGCGACCCATCACGCACG back to topprotein sequence of rna6849 >rna6849-protein ID=rna6849-protein|Name=rna6849|organism=Nannochloropsis gaditana|type=polypeptide|length=353bp
MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGH
YFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVEL
DTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENE
VREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRR
AHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEE
DEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEG
GRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRT
FYR back to topmRNA from alignment at CM002469.1:634826..636923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6849 ID=rna6849|Name=rna6849|organism=Nannochloropsis gaditana|type=mRNA|length=2098bp|location=Sequence derived from alignment at CM002469.1:634826..636923+ (Nannochloropsis gaditana)
TGCTTTATCTGCCCAGTCTGACACGCCCTTCTGTTCAAACATTGTACATC
CTGTGCTGATTCGTCTTTTACCCGGGGGCAGGAAAATTACGCGGCATCGG
AAGACCATCCACGTACCCCTTGAGGTTGCTGCAGGTGTTTGCGATGGTAG
GGCCTGCCAGAGAGGGTAAAAATGGaaaggtggaagaggaagacgacgaa
aTGACGGTGAAGTGTGCGGCGTGCGAACAACGGGAGGATGCTTTGGACAA
TTTGAGCCGGAAACGTTTCAAGATCAATACATCCTGCGGGCATTATTTGT
GAGGAGCTGGGGGGGCGataagagggagggggagggaacgaatCGGGGCA
GCGGTTGACCCTAGAAATAGCCCTAGACATATGTAGTTTGTGATATGCAA
GGAAACGAACCAGCGTGAAAGCAAGGTTGGAGGGAGACTAAATGTACAGT
TATAAAGTCGATGCTGGAGGCTCATGTTTTGtgcgtcctttccctccttc
cctccctcattccctcctaTTTCTCTTCCCACTCCCCAGTTGCGACACAT
GCATCCAGCGGGAATTTGCCCGAAAAACCCGTGGTGGCTTTCGTTGCCCT
GCCTGCGCCCGGCTtgggaaggacagggaggtgcTGCGTCAGAGTTTAGA
GACCAAGTCCCGGGAGCAATTAATGGTGGAATTGGATacaaaatggcgcg
aacgaGTCTTGGAGGTGTacggaaagaaggaggaggactttgGGGGTAAC
GAGGATGCCTATAATGACTACatcgaggagcgggaggaccTGAGTACGTG
CTTCGAAAGAGGGGAGCCGAAACAGGGTCGTGTGACCGTagtctgccctc
cctccctccctccctccctccacccatccctataccacgccttcctcgcc
tcgctcACCTTAATTTCTTTTAAATTAAGGCTGTGTGGCAGATATCGGCA
AGCTATGCTTGtcttttgcttccttttcctctcctacctccctccctccc
tcgcctcatCAAgacccttctcttttcccacgactcgtctccctccatcc
tttgtTCCTCCCGTACTCAGTCTATACACTGGCTAACCGGCTCTTCATCG
ATGAGAACGAGGTGCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAAG
ACCAACGAGGTCGCCGTCGCTAGATATAGAGCCCGGCGGGAAGGTAGGAG
GCCGTTGGGAGAGAGGGTTGATCAAGCCGTTTTGTGCCCTTTGCCTCACC
TCGCCAGCACTCTCCCCCCTGGTCCATGGGCTCCGTAACGGATTTTAAAA
TCCAAGATTTCGAATTTGCTTCCCGCTcacaccgtccctcccctccatca
gaGGATCGACGGCGCTCCGCTCGAGCTGTGGAAAGCTTTGAACAAGAATG
GGCCGAACAAGTCCGACGCGCACACgagcaggagaagcgcgaattggaaa
aattgcgcgaattTCGCTTGCAAATTCAACAGAAGAATTTGGGAGAGCGC
GATCAGGTGACGGTCGAACTAGTgggcagaggcgggggagggagggcgga
tggtgaggaggaagaggaagacgaggacgtggcgcgGGCACtggggcgag
agggagggagggggggagggttggagggaggcggggcaggaatGAGCGGA
GCGAGCGCTTTCTGTACCAATCTCCGCGTCCTGGTcgggccccccccccg
gatcgtggtggtggagggagggcgggagacaggaggggagggagggaagg
agggcattgCCAAGGCGAGCGGTTGGCCTTTGTCCCTGCGGTATAAACgg
tgctgggaggaggccatcgCGTCCTTGTTCTTGGGTTcgggggaaacgag
ggggaggttggggcgGACGTTTTATCGCtaggtaggggaggagggaggga
gaggtgtccgagggaggaggacgtggacagGGGAAACGCGAGAAGTTCTT
CTTGTAGCTCTTGGTGGGCCAGCTTTGCAATAGGGTGTTGGCGTCCGTAG
TGGCACGGTGTGAGGTCGTCGGTGAGATGCTCGCGGCCTTGTTTAGAACG
GTAATGTTCGAATCAAGAACTTTGTGTATACGCGACCCATCACGCACG back to topCoding sequence (CDS) from alignment at CM002469.1:634826..636923+ >rna6849 ID=rna6849|Name=rna6849|organism=Nannochloropsis gaditana|type=CDS|length=4248bp|location=Sequence derived from alignment at CM002469.1:634826..636923+ (Nannochloropsis gaditana)
ATGGTAGGGCCTGCCAGAGAGGGTAAAAATGGaaaggtggaagaggaaga
cgacgaaaTGACGGTGAAGTGTGCGGCGTGCGAACAACGGGAGGATGCTT
TGGACAATTTGAGCCGGAAACGTTTCAAGATCAATACATCCTGCGGGCAT
TATTTTTGCGACACATGCATCCAGCGGGAATTTGCCCGAAAAACCCGTGG
TGGCTTTCGTTGCCCTGCCTGCGCCCGGCTtgggaaggacagggaggtgc
TGCGTCAGAGTTTAGAGACCAAGTCCCGGGAGCAATTAATGGTGGAATTG
GATacaaaatggcgcgaacgaGTCTTGGAGGTGTacggaaagaaggagga
ggactttgGGGGTAACGAGGATGCCTATAATGACTACatcgaggagcggg
aggaccTGATCTATACACTGGCTAACCGGCTCTTCATCGATGAGAACGAG
GTGCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGT
CGCCGTCGCTAGATATAGAGCCCGGCGGGAAGaGGATCGACGGCGCTCCG
CTCGAGCTGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTCCGACGC
GCACACgagcaggagaagcgcgaattggaaaaattgcgcgaattTCGCTT
GCAAATTCAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGGTCGAAC
TAGTgggcagaggcgggggagggagggcggatggtgaggaggaagaggaa
gacgaggacgtggcgcgGGCACtggggcgagagggagggagggggggagg
gttggagggaggcggggcaggaatGAGCGGAGCGAGCGCTTTCTGTACCA
ATCTCCGCGTCCTGGTcgggccccccccccggatcgtggtggtggaggga
gggcgggagacaggaggggagggagggaaggagggcattgCCAAGGCGAG
CGGTTGGCCTTTGTCCCTGCGGTATAAACggtgctgggaggaggccatcg
CGTCCTTGTTCTTGGGTTcgggggaaacgagggggaggttggggcgGACG
TTTTATCGCtagATGGTAGGGCCTGCCAGAGAGGGTAAAAATGGaaaggt
ggaagaggaagacgacgaaaTGACGGTGAAGTGTGCGGCGTGCGAACAAC
GGGAGGATGCTTTGGACAATTTGAGCCGGAAACGTTTCAAGATCAATACA
TCCTGCGGGCATTATTTTTGCGACACATGCATCCAGCGGGAATTTGCCCG
AAAAACCCGTGGTGGCTTTCGTTGCCCTGCCTGCGCCCGGCTtgggaagg
acagggaggtgcTGCGTCAGAGTTTAGAGACCAAGTCCCGGGAGCAATTA
ATGGTGGAATTGGATacaaaatggcgcgaacgaGTCTTGGAGGTGTacgg
aaagaaggaggaggactttgGGGGTAACGAGGATGCCTATAATGACTACa
tcgaggagcgggaggaccTGATCTATACACTGGCTAACCGGCTCTTCATC
GATGAGAACGAGGTGCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAA
GACCAACGAGGTCGCCGTCGCTAGATATAGAGCCCGGCGGGAAGaGGATC
GACGGCGCTCCGCTCGAGCTGTGGAAAGCTTTGAACAAGAATGGGCCGAA
CAAGTCCGACGCGCACACgagcaggagaagcgcgaattggaaaaattgcg
cgaattTCGCTTGCAAATTCAACAGAAGAATTTGGGAGAGCGCGATCAGG
TGACGGTCGAACTAGTgggcagaggcgggggagggagggcggatggtgag
gaggaagaggaagacgaggacgtggcgcgGGCACtggggcgagagggagg
gagggggggagggttggagggaggcggggcaggaatGAGCGGAGCGAGCG
CTTTCTGTACCAATCTCCGCGTCCTGGTcgggccccccccccggatcgtg
gtggtggagggagggcgggagacaggaggggagggagggaaggagggcat
tgCCAAGGCGAGCGGTTGGCCTTTGTCCCTGCGGTATAAACggtgctggg
aggaggccatcgCGTCCTTGTTCTTGGGTTcgggggaaacgagggggagg
ttggggcgGACGTTTTATCGCtagATGGTAGGGCCTGCCAGAGAGGGTAA
AAATGGaaaggtggaagaggaagacgacgaaaTGACGGTGAAGTGTGCGG
CGTGCGAACAACGGGAGGATGCTTTGGACAATTTGAGCCGGAAACGTTTC
AAGATCAATACATCCTGCGGGCATTATTTTTGCGACACATGCATCCAGCG
GGAATTTGCCCGAAAAACCCGTGGTGGCTTTCGTTGCCCTGCCTGCGCCC
GGCTtgggaaggacagggaggtgcTGCGTCAGAGTTTAGAGACCAAGTCC
CGGGAGCAATTAATGGTGGAATTGGATacaaaatggcgcgaacgaGTCTT
GGAGGTGTacggaaagaaggaggaggactttgGGGGTAACGAGGATGCCT
ATAATGACTACatcgaggagcgggaggaccTGATCTATACACTGGCTAAC
CGGCTCTTCATCGATGAGAACGAGGTGCGGGAGGCAGAAATCCGCCTGGA
GAAAGAACGCAAGACCAACGAGGTCGCCGTCGCTAGATATAGAGCCCGGC
GGGAAGaGGATCGACGGCGCTCCGCTCGAGCTGTGGAAAGCTTTGAACAA
GAATGGGCCGAACAAGTCCGACGCGCACACgagcaggagaagcgcgaatt
ggaaaaattgcgcgaattTCGCTTGCAAATTCAACAGAAGAATTTGGGAG
AGCGCGATCAGGTGACGGTCGAACTAGTgggcagaggcgggggagggagg
gcggatggtgaggaggaagaggaagacgaggacgtggcgcgGGCACtggg
gcgagagggagggagggggggagggttggagggaggcggggcaggaatGA
GCGGAGCGAGCGCTTTCTGTACCAATCTCCGCGTCCTGGTcgggcccccc
ccccggatcgtggtggtggagggagggcgggagacaggaggggagggagg
gaaggagggcattgCCAAGGCGAGCGGTTGGCCTTTGTCCCTGCGGTATA
AACggtgctgggaggaggccatcgCGTCCTTGTTCTTGGGTTcgggggaa
acgagggggaggttggggcgGACGTTTTATCGCtagATGGTAGGGCCTGC
CAGAGAGGGTAAAAATGGaaaggtggaagaggaagacgacgaaaTGACGG
TGAAGTGTGCGGCGTGCGAACAACGGGAGGATGCTTTGGACAATTTGAGC
CGGAAACGTTTCAAGATCAATACATCCTGCGGGCATTATTTTTGCGACAC
ATGCATCCAGCGGGAATTTGCCCGAAAAACCCGTGGTGGCTTTCGTTGCC
CTGCCTGCGCCCGGCTtgggaaggacagggaggtgcTGCGTCAGAGTTTA
GAGACCAAGTCCCGGGAGCAATTAATGGTGGAATTGGATacaaaatggcg
cgaacgaGTCTTGGAGGTGTacggaaagaaggaggaggactttgGGGGTA
ACGAGGATGCCTATAATGACTACatcgaggagcgggaggaccTGATCTAT
ACACTGGCTAACCGGCTCTTCATCGATGAGAACGAGGTGCGGGAGGCAGA
AATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGTCGCCGTCGCTAGAT
ATAGAGCCCGGCGGGAAGaGGATCGACGGCGCTCCGCTCGAGCTGTGGAA
AGCTTTGAACAAGAATGGGCCGAACAAGTCCGACGCGCACACgagcagga
gaagcgcgaattggaaaaattgcgcgaattTCGCTTGCAAATTCAACAGA
AGAATTTGGGAGAGCGCGATCAGGTGACGGTCGAACTAGTgggcagaggc
gggggagggagggcggatggtgaggaggaagaggaagacgaggacgtggc
gcgGGCACtggggcgagagggagggagggggggagggttggagggaggcg
gggcaggaatGAGCGGAGCGAGCGCTTTCTGTACCAATCTCCGCGTCCTG
GTcgggccccccccccggatcgtggtggtggagggagggcgggagacagg
aggggagggagggaaggagggcattgCCAAGGCGAGCGGTTGGCCTTTGT
CCCTGCGGTATAAACggtgctgggaggaggccatcgCGTCCTTGTTCTTG
GGTTcgggggaaacgagggggaggttggggcgGACGTTTTATCGCtag back to top
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