EWM23839.1, cds6833 (CDS) Nannochloropsis gaditana

Overview
NameEWM23839.1
Unique Namecds6833
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:634969..635123 +
Alignment locationCM002469.1:635365..635618 +
Alignment locationCM002469.1:635896..636018 +
Alignment locationCM002469.1:636177..636706 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23839.1
Productcdk-activating kinase assembly factor mat1
Orig transcript idgnl|cribi|Naga_100273g5.3655.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:634969..635123 +
CM002469.1supercontigCM002469.1:635365..635618 +
CM002469.1supercontigCM002469.1:635896..636018 +
CM002469.1supercontigCM002469.1:636177..636706 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
GO:0007049cell cycle
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR004575MAT1/Tfb3
IPR015877Cdk-activating_kinase_MAT1_cen
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|585105107|gb|EWM23839.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana])

HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query:    1 MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
            MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct:    1 MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|585105108|gb|EWM23840.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana])

HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:   53 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
            CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 334          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|299469952|emb|CBN76806.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.079 bits (279), Expect = 8.782e-25
Identity = 91/329 (27.66%), Postives = 152/329 (46.20%), Query Frame = 0
Query:   17 DDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIA-------KASGWP-LSLRYKRCWEEAIASLF 337
            DDE+   C  C+  +D   N+++++  +N  CGH F   C ++E  R  R  F CPAC       +V R  L  K+ ++L V  D   R+R+ +++ + EEDFGG+  AYNDY+E  ED+IY L +    D+ E   A+  + +    +   + +  AR+ +  +     + +  Q+   +      +E R+ +  R+ +L+ Q+  LGERD VT  + G G     D            +L  EG  G G E G  G +  +A    +R ++  P  +   +  ++T        +        KA+  P  +L  KR W E + SLF
Sbjct:    2 DDELV--CVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLR--RKTFPCPAC-----QVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSG---DKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM-GDGLFLFLD------------SLTGEGLDGAGGEPGANG-NAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|553187413|ref|XP_005854607.1| (hypothetical protein NGA_0210400, partial [Nannochloropsis gaditana CCMP526] >gi|422294459|gb|EKU21759.1| hypothetical protein NGA_0210400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 103.605 bits (257), Expect = 1.554e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:   20 MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR 66
            MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR
Sbjct:    1 MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR 47          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|1210526247|dbj|GAX15165.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris])

HSP 1 Score: 103.219 bits (256), Expect = 1.078e-21
Identity = 76/226 (33.63%), Postives = 124/226 (54.87%), Query Frame = 0
Query:   13 VEEEDDEMTVKCAACEQREDALDNL-SRKRFKINTS--CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 234
            ++E ++E   +CA C   E    NL S+     N +  CGH FC +C+ REFAR  R  F CP C+ + K     R +L  ++ + +  E DT WR RVL+VY K + DF    + YN+Y+E  ED+I+++ N    +E    E + +++   + N+ A+   +++R  D  RS +   + EQ  AEQ+R  A E EK   +  R+++ +  +  LGER++V+ EL
Sbjct:    1 MDENNEEDLFRCAICGTAEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTQADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 213          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|567965850|gb|ETK91318.1| (hypothetical protein L915_05066 [Phytophthora parasitica] >gi|568023843|gb|ETL97891.1| hypothetical protein L917_04906 [Phytophthora parasitica] >gi|570332242|gb|ETO80190.1| hypothetical protein F444_05233 [Phytophthora parasitica P1976])

HSP 1 Score: 103.219 bits (256), Expect = 1.759e-21
Identity = 72/220 (32.73%), Postives = 120/220 (54.55%), Query Frame = 0
Query:   15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
            +E DE+ ++C  C    ED  + L+ K   + + CGH FCD CI+REF  +      CPAC +      V +  L+ K+ E+L    +T  R++V + Y K E+DF    D YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ N +A+A   A++ ++ RR A+ +   +Q  AE+ R   ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:    5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPACQK-----PVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|675187515|ref|XP_008902642.1| (hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|566028526|gb|ETI51437.1| hypothetical protein F443_05201 [Phytophthora parasitica P1569] >gi|567994565|gb|ETL44720.1| hypothetical protein L916_05023 [Phytophthora parasitica] >gi|568054260|gb|ETM51051.1| hypothetical protein L914_05019 [Phytophthora parasitica] >gi|568096936|gb|ETN11680.1| hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|570956174|gb|ETP21213.1| hypothetical protein F441_05201 [Phytophthora parasitica CJ01A1] >gi|570991365|gb|ETP49141.1| hypothetical protein F442_05249 [Phytophthora parasitica P10297] >gi|970645554|gb|KUF85988.1| hypothetical protein AM588_10001059 [Phytophthora nicotianae] >gi|970647193|gb|KUF87089.1| CDK-activating kinase assembly factor MAT1 [Phytophthora nicotianae])

HSP 1 Score: 102.834 bits (255), Expect = 2.216e-21
Identity = 72/220 (32.73%), Postives = 120/220 (54.55%), Query Frame = 0
Query:   15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
            +E DE+ ++C  C    ED  + L+ K   + + CGH FCD CI+REF  +      CPAC      + V +  L+ K+ E+L    +T  R++V + Y K E+DF    D YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ N +A+A   A++ ++ RR A+ +   +Q  AE+ R   ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:    5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPAC-----QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|1210517312|dbj|GAX23569.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris])

HSP 1 Score: 102.064 bits (253), Expect = 2.810e-21
Identity = 75/216 (34.72%), Postives = 118/216 (54.63%), Query Frame = 0
Query:   23 KCAACEQREDALDNL-SRKRFKINTS--CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 234
            +CA C   E    NL S+     N +  CGH FC +C+ REFAR  R  F CP C+ + K     R +L  ++ + +  E DT WR RVL+VY K E DF    + YN+Y+E  ED+I+++ N    +E    E + +++   + N+ A+   +++R  D  RS +   + EQ  AEQ+R  A E EK   +  R+++ +  +  LGER++V+ EL
Sbjct:    7 RCAICGTTEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTEADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 209          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|301111189|ref|XP_002904674.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095991|gb|EEY54043.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 101.293 bits (251), Expect = 8.075e-21
Identity = 71/220 (32.27%), Postives = 122/220 (55.45%), Query Frame = 0
Query:   15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
            +E DE+ ++C  C    ED  + L+ K   + + CGH FCD CI+REF  +      CPAC      + V +  L+ K+ E+L    +T  R++V + Y K E+DF   E+ YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ + +A+A   A++ ++ RR A+ +   +Q  AE+ R+  ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:    5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPAC-----QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFDTLEE-YNDYLETLENLIFDL---VYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRQLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|813114890|ref|XP_012195400.1| (hypothetical protein SPRG_01643 [Saprolegnia parasitica CBS 223.65] >gi|641539967|gb|KDO33762.1| hypothetical protein SPRG_01643 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 100.908 bits (250), Expect = 9.916e-21
Identity = 85/272 (31.25%), Postives = 130/272 (47.79%), Query Frame = 0
Query:   17 DDEMTVKCAACEQREDALDNLSRKRFKINTS-CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV-ELVGRGGGGRADGEEEEEDEDVARALGREGGRGGG-----LEGGGAGMSGASA 280
            DDE   KC  C    D   N+   R KI  S CGH +CD C++REF        R   CA+ G  + + +  L+ K++E+     D   R++VL+ Y K  EDF    D YN Y+EE EDLI+ L   L  DE E   A+ + ++ +  N + +    A++ E+ RR    +E  +Q  A++ RR  ++E  + +  L   + Q+ +  LGERD+  V E++        D     E E  A  +G + G  GG     + GG  G   A +
Sbjct:    5 DDEFAAKCCVCGTAADDDSNILNTRMKILISKCGHRYCDQCVKREFQH-----HREITCAKPGCGKPIKKSQLQDKTKEEQDFAKDIAIRKKVLKTYNKTGEDFN-TLDEYNAYLEEVEDLIFAL---LSDDEAEKEAAQKKWKQYKMENAILINANDAKKAEEERRVLHMIEE-QQRVADERRRLQQKEDNKFQVDLERQKAQLMEVALGERDENDVDEILNPTTAVPIDQPLTAEME--AAMMGFQPGVFGGPQPIPVHGGKRGPGAADS 264          
The following BLAST results are available for this feature:
BLAST of EWM23839.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105107|gb|EWM23839.1|0.000e+0100.00cdk-activating kinase assembly factor mat1 [Nannoc... [more]
gi|585105108|gb|EWM23840.1|0.000e+0100.00cdk-activating kinase assembly factor mat1 [Nannoc... [more]
gi|299469952|emb|CBN76806.1|8.782e-2527.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|553187413|ref|XP_005854607.1|1.554e-24100.00hypothetical protein NGA_0210400, partial [Nannoch... [more]
gi|1210526247|dbj|GAX15165.1|1.078e-2133.63CDK-activating kinase assembly factor MAT1 [Fistul... [more]
gi|567965850|gb|ETK91318.1|1.759e-2132.73hypothetical protein L915_05066 [Phytophthora para... [more]
gi|675187515|ref|XP_008902642.1|2.216e-2132.73hypothetical protein PPTG_09394 [Phytophthora para... [more]
gi|1210517312|dbj|GAX23569.1|2.810e-2134.72CDK-activating kinase assembly factor MAT1 [Fistul... [more]
gi|301111189|ref|XP_002904674.1|8.075e-2132.27conserved hypothetical protein [Phytophthora infes... [more]
gi|813114890|ref|XP_012195400.1|9.916e-2131.25hypothetical protein SPRG_01643 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6849rna6849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications