EWM23839.1, cds6833 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|585105107|gb|EWM23839.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana]) HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0 Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query: 1 MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct: 1 MVGPAREGKNGKVEEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|585105108|gb|EWM23840.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana]) HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query: 53 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct: 34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 334
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|299469952|emb|CBN76806.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 112.079 bits (279), Expect = 8.782e-25 Identity = 91/329 (27.66%), Postives = 152/329 (46.20%), Query Frame = 0
Query: 17 DDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIA-------KASGWP-LSLRYKRCWEEAIASLF 337
DDE+ C C+ +D N+++++ +N CGH F C ++E R R F CPAC +V R L K+ ++L V D R+R+ +++ + EEDFGG+ AYNDY+E ED+IY L + D+ E A+ + + + + + AR+ + + + + Q+ + +E R+ + R+ +L+ Q+ LGERD VT + G G D +L EG G G E G G + +A +R ++ P + + ++T + KA+ P +L KR W E + SLF
Sbjct: 2 DDELV--CVLCKGAQDEASNITQQKLVVNNKCGHRFHQACAEKELLR--RKTFPCPAC-----QVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSG---DKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM-GDGLFLFLD------------SLTGEGLDGAGGEPGANG-NAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|553187413|ref|XP_005854607.1| (hypothetical protein NGA_0210400, partial [Nannochloropsis gaditana CCMP526] >gi|422294459|gb|EKU21759.1| hypothetical protein NGA_0210400, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 103.605 bits (257), Expect = 1.554e-24 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query: 20 MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR 66
MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR
Sbjct: 1 MTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTR 47
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|1210526247|dbj|GAX15165.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris]) HSP 1 Score: 103.219 bits (256), Expect = 1.078e-21 Identity = 76/226 (33.63%), Postives = 124/226 (54.87%), Query Frame = 0
Query: 13 VEEEDDEMTVKCAACEQREDALDNL-SRKRFKINTS--CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 234
++E ++E +CA C E NL S+ N + CGH FC +C+ REFAR R F CP C+ + K R +L ++ + + E DT WR RVL+VY K + DF + YN+Y+E ED+I+++ N +E E + +++ + N+ A+ +++R D RS + + EQ AEQ+R A E EK + R+++ + + LGER++V+ EL
Sbjct: 1 MDENNEEDLFRCAICGTAEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTQADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 213
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|567965850|gb|ETK91318.1| (hypothetical protein L915_05066 [Phytophthora parasitica] >gi|568023843|gb|ETL97891.1| hypothetical protein L917_04906 [Phytophthora parasitica] >gi|570332242|gb|ETO80190.1| hypothetical protein F444_05233 [Phytophthora parasitica P1976]) HSP 1 Score: 103.219 bits (256), Expect = 1.759e-21 Identity = 72/220 (32.73%), Postives = 120/220 (54.55%), Query Frame = 0
Query: 15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
+E DE+ ++C C ED + L+ K + + CGH FCD CI+REF + CPAC + V + L+ K+ E+L +T R++V + Y K E+DF D YNDY+E E+LI+ L ++ D+ E A+ + ++ R+ N +A+A A++ ++ RR A+ + +Q AE+ R ++E + E L + Q+ + LGERD+ V
Sbjct: 5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPACQK-----PVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|675187515|ref|XP_008902642.1| (hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|566028526|gb|ETI51437.1| hypothetical protein F443_05201 [Phytophthora parasitica P1569] >gi|567994565|gb|ETL44720.1| hypothetical protein L916_05023 [Phytophthora parasitica] >gi|568054260|gb|ETM51051.1| hypothetical protein L914_05019 [Phytophthora parasitica] >gi|568096936|gb|ETN11680.1| hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|570956174|gb|ETP21213.1| hypothetical protein F441_05201 [Phytophthora parasitica CJ01A1] >gi|570991365|gb|ETP49141.1| hypothetical protein F442_05249 [Phytophthora parasitica P10297] >gi|970645554|gb|KUF85988.1| hypothetical protein AM588_10001059 [Phytophthora nicotianae] >gi|970647193|gb|KUF87089.1| CDK-activating kinase assembly factor MAT1 [Phytophthora nicotianae]) HSP 1 Score: 102.834 bits (255), Expect = 2.216e-21 Identity = 72/220 (32.73%), Postives = 120/220 (54.55%), Query Frame = 0
Query: 15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
+E DE+ ++C C ED + L+ K + + CGH FCD CI+REF + CPAC + V + L+ K+ E+L +T R++V + Y K E+DF D YNDY+E E+LI+ L ++ D+ E A+ + ++ R+ N +A+A A++ ++ RR A+ + +Q AE+ R ++E + E L + Q+ + LGERD+ V
Sbjct: 5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPAC-----QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|1210517312|dbj|GAX23569.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris]) HSP 1 Score: 102.064 bits (253), Expect = 2.810e-21 Identity = 75/216 (34.72%), Postives = 118/216 (54.63%), Query Frame = 0
Query: 23 KCAACEQREDALDNL-SRKRFKINTS--CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 234
+CA C E NL S+ N + CGH FC +C+ REFAR R F CP C+ + K R +L ++ + + E DT WR RVL+VY K E DF + YN+Y+E ED+I+++ N +E E + +++ + N+ A+ +++R D RS + + EQ AEQ+R A E EK + R+++ + + LGER++V+ EL
Sbjct: 7 RCAICGTTEGDSSNLTSQASLMTNATVKCGHQFCQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTEADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 209
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|301111189|ref|XP_002904674.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095991|gb|EEY54043.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 101.293 bits (251), Expect = 8.075e-21 Identity = 71/220 (32.27%), Postives = 122/220 (55.45%), Query Frame = 0
Query: 15 EEDDEMTVKCAAC-EQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 232
+E DE+ ++C C ED + L+ K + + CGH FCD CI+REF + CPAC + V + L+ K+ E+L +T R++V + Y K E+DF E+ YNDY+E E+LI+ L ++ D+ E A+ + ++ R+ + +A+A A++ ++ RR A+ + +Q AE+ R+ ++E + E L + Q+ + LGERD+ V
Sbjct: 5 DEADELALRCCVCGTSAEDDSNYLNTKMKMLISKCGHRFCDHCIKREFQHQRE--ISCPAC-----QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFDTLEE-YNDYLETLENLIFDL---VYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRQLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212
BLAST of EWM23839.1 vs. NCBI_GenBank
Match: gi|813114890|ref|XP_012195400.1| (hypothetical protein SPRG_01643 [Saprolegnia parasitica CBS 223.65] >gi|641539967|gb|KDO33762.1| hypothetical protein SPRG_01643 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 100.908 bits (250), Expect = 9.916e-21 Identity = 85/272 (31.25%), Postives = 130/272 (47.79%), Query Frame = 0
Query: 17 DDEMTVKCAACEQREDALDNLSRKRFKINTS-CGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV-ELVGRGGGGRADGEEEEEDEDVARALGREGGRGGG-----LEGGGAGMSGASA 280
DDE KC C D N+ R KI S CGH +CD C++REF R CA+ G + + + L+ K++E+ D R++VL+ Y K EDF D YN Y+EE EDLI+ L L DE E A+ + ++ + N + + A++ E+ RR +E +Q A++ RR ++E + + L + Q+ + LGERD+ V E++ D E E A +G + G GG + GG G A +
Sbjct: 5 DDEFAAKCCVCGTAADDDSNILNTRMKILISKCGHRYCDQCVKREFQH-----HREITCAKPGCGKPIKKSQLQDKTKEEQDFAKDIAIRKKVLKTYNKTGEDFN-TLDEYNAYLEEVEDLIFAL---LSDDEAEKEAAQKKWKQYKMENAILINANDAKKAEEERRVLHMIEE-QQRVADERRRLQQKEDNKFQVDLERQKAQLMEVALGERDENDVDEILNPTTAVPIDQPLTAEME--AAMMGFQPGVFGGPQPIPVHGGKRGPGAADS 264 The following BLAST results are available for this feature:
BLAST of EWM23839.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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