|
|
Properties
| Property Name | Value |
|---|
| Product | cdk-activating kinase assembly factor mat1 |
| Orig transcript id | gnl|cribi|Naga_100273g5.3656.mrna |
| Orig protein id | gnl|cribi|Naga_100273g5.3656 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:634789..636923 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6848 ID=rna6848|Name=rna6848|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp
CGTGGCCAGACCTCGATCTAAGTCCCCATCCCCCCTTTCATGGATGTCAC
TTGACTATGGCATATCTTTCTCTTCAACATGTCATTGCACGACTTGTCCG
TAGAAAACCCTGCCCTCTTCCGCACATTGCAATTATTGAACGAAAAGTCG
CACGAGCAACCTTGTCGTCTGGAGGACTTGAAGGCCTGCAGCCATCAGGC
AACGACATATTAAAGGAATTATATGACCAATTCACGACCGTTGATCTTAA
ATTTTGGCCACAGGAGCATGTTCTAAGATCTATAGAGGCTAATGTAGATG
CAAAGCTTTCATGTCACCCCTCACCGGCTGGACACATGTGCAGAAGGCGC
TGCCGTGAGGCGGGCGTTCCTGGGCCTTTTCTGCATCTCTATTTCTCACC
CAACACATCCCTTCCCCCCTTACGACTTTGATATATAGATTGTTGGCATC
CAAGTTCAAATTTATCCACTTTCCATCATGCGTACCATCTCTTTCCTGGC
CCTTGCCACCCCTGCCCTCGCCTTCATGACCCCCATGCCTGTCACTGAAC
GCAAGTAAGTACATTTGTTTGTCCAACTGCCTTCTCCGCTGTCGAGTCTA
ATGGAGGGAACGAAGGGATCGCGTTTTGAACCTGCGCACATTCCCCCTAG
CCGCCTTGTGCGGTCGTCGAATCACCCTTTGGTTCCCATGGCGGACAGCT
TTTCCCATCGAGGCCCCTCAATTTCCCCAAATGCTTCCCTTCCCCCCTTC
CCAGCGTCATGCGCATGACCGCCGAGAAGACAAGCTCCCCCCTGAGCCTG
GGTAACGTCGTCAAGGGATTTGCCACGGCCTCCATGTTTTTTAATTTCGC
CACTATGCCCCTGACGTCCATGCCTGAAAGTGCCCTGGCCAAGTCTGGAG
AGGGGCCCAAGCAGTCTGTTTTCGGCCTGGGGGGCGACGCTGCGTCCTCC
CCTTTTGTGCAGGACGTACCTACCTACTCGCCTTACTCTCCCTACGGGAC
CGGTGAGAACGCTCTCTTCAAGCCCCTGAACGCGGACGACGTGAAGCTCT
ACACTTCCAAGGTGACCGAGTCCAAGAAGCGTGTGGACAAGATTGCCAAG
TACCTGGAGAAGAAGCAGTGGGAGGAGGTGCGCACGGAATTGACCCGTCA
AATGTACGACTTGCGCCGTTCGGGCCAAAAACTTGCCGAGAACAAGCAGA
GCCCTGAGGCCAGCAAGGCCCTCAAGAGCCTCTTCCAGGACATTGAAGAT
TTGACCGTGGCCAGCCGTCGCAAGCAGGTGGATGTGTCCCAGGCGGCTTA
CTCGCGGGCCCAGGCGGACTTTGACGCGTTCCTGAAAGCACTTTAAACGC
GGGGGGGAAATGGACACAGACTGAGAGGGAGGAGATAGAAAGGAGGGGAC
TCGTTGGAATGCTGGAGAGGGAAAGACAGTGGTACGCTTCGCTGGTTTCG
ATGGGAATTTAGGTGTGTTGGTGCCTGTGTTTCTCTTTGGCGATGGCGGG
AGGTGGAGGGGGAAGGCGAGAAGGGTGGATGGGGCAGCGAGATGGAAAAG
CTCCAAGGTTCTCATGAAAGAAGCAGGCAAGAGACCGAAACCCTCGGTGA
TGTGAAGAAACGGAGCTAACGCGCAAGATGCTACATTTCAAGTTGGAGGG
GTGACCCCACCTAGTTGACGATGTGGGAGGCATCTGATGTCCCACTGGTC
CCTATCAAAGGGGGGGGGAATCAACTTATGATTGCTTTCC back to topprotein sequence of rna6848 >rna6848-protein ID=rna6848-protein|Name=rna6848|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MYSYKVDAGGSCFVRPFPPSLPHSLLFLFPLPSCDTCIQREFARKTRGGF
RCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDF
GGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAV
ARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQI
QQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLE
GGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGW
PLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR back to topmRNA from alignment at CM002469.1:634789..636923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6848 ID=rna6848|Name=rna6848|organism=Nannochloropsis gaditana|type=mRNA|length=2135bp|location=Sequence derived from alignment at CM002469.1:634789..636923+ (Nannochloropsis gaditana)
AGCGAAAACTGTTTGCATTGCATCCGGTATGCGTGAGTGCTTTATCTGCC
CAGTCTGACACGCCCTTCTGTTCAAACATTGTACATCCTGTGCTGATTCG
TCTTTTACCCGGGGGCAGGAAAATTACGCGGCATCGGAAGACCATCCACG
TACCCCTTGAGGTTGCTGCAGGTGTTTGCGATGGTAGGGCCTGCCAGAGA
GGGTAAAAATGGaaaggtggaagaggaagacgacgaaaTGACGGTGAAGT
GTGCGGCGTGCGAACAACGGGAGGATGCTTTGGACAATTTGAGCCGGAAA
CGTTTCAAGATCAATACATCCTGCGGGCATTATTTGTGAGGAGCTGGGGG
GGCGataagagggagggggagggaacgaatCGGGGCAGCGGTTGACCCTA
GAAATAGCCCTAGACATATGTAGTTTGTGATATGCAAGGAAACGAACCAG
CGTGAAAGCAAGGTTGGAGGGAGACTAAATGTACAGTTATAAAGTCGATG
CTGGAGGCTCATGTTTTGtgcgtcctttccctccttccctccctcattcc
ctcctaTTTCTCTTCCCACTCCCCAGTTGCGACACATGCATCCAGCGGGA
ATTTGCCCGAAAAACCCGTGGTGGCTTTCGTTGCCCTGCCTGCGCCCGGC
TtgggaaggacagggaggtgcTGCGTCAGAGTTTAGAGACCAAGTCCCGG
GAGCAATTAATGGTGGAATTGGATacaaaatggcgcgaacgaGTCTTGGA
GGTGTacggaaagaaggaggaggactttgGGGGTAACGAGGATGCCTATA
ATGACTACatcgaggagcgggaggaccTGAGTACGTGCTTCGAAAGAGGG
GAGCCGAAACAGGGTCGTGTGACCGTagtctgccctccctccctccctcc
ctccctccacccatccctataccacgccttcctcgcctcgctcACCTTAA
TTTCTTTTAAATTAAGGCTGTGTGGCAGATATCGGCAAGCTATGCTTGtc
ttttgcttccttttcctctcctacctccctccctccctcgcctcatCAAg
acccttctcttttcccacgactcgtctccctccatcctttgtTCCTCCCG
TACTCAGTCTATACACTGGCTAACCGGCTCTTCATCGATGAGAACGAGGT
GCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGTCG
CCGTCGCTAGATATAGAGCCCGGCGGGAAGGTAGGAGGCCGTTGGGAGAG
AGGGTTGATCAAGCCGTTTTGTGCCCTTTGCCTCACCTCGCCAGCACTCT
CCCCCCTGGTCCATGGGCTCCGTAACGGATTTTAAAATCCAAGATTTCGA
ATTTGCTTCCCGCTcacaccgtccctcccctccatcagaGGATCGACGGC
GCTCCGCTCGAGCTGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTC
CGACGCGCACACgagcaggagaagcgcgaattggaaaaattgcgcgaatt
TCGCTTGCAAATTCAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGG
TCGAACTAGTgggcagaggcgggggagggagggcggatggtgaggaggaa
gaggaagacgaggacgtggcgcgGGCACtggggcgagagggagggagggg
gggagggttggagggaggcggggcaggaatGAGCGGAGCGAGCGCTTTCT
GTACCAATCTCCGCGTCCTGGTcgggccccccccccggatcgtggtggtg
gagggagggcgggagacaggaggggagggagggaaggagggcattgCCAA
GGCGAGCGGTTGGCCTTTGTCCCTGCGGTATAAACggtgctgggaggagg
ccatcgCGTCCTTGTTCTTGGGTTcgggggaaacgagggggaggttgggg
cgGACGTTTTATCGCtaggtaggggaggagggagggagaggtgtccgagg
gaggaggacgtggacagGGGAAACGCGAGAAGTTCTTCTTGTAGCTCTTG
GTGGGCCAGCTTTGCAATAGGGTGTTGGCGTCCGTAGTGGCACGGTGTGA
GGTCGTCGGTGAGATGCTCGCGGCCTTGTTTAGAACGGTAATGTTCGAAT
CAAGAACTTTGTGTATACGCGACCCATCACGCACG back to topCoding sequence (CDS) from alignment at CM002469.1:634789..636923+ >rna6848 ID=rna6848|Name=rna6848|organism=Nannochloropsis gaditana|type=CDS|length=3015bp|location=Sequence derived from alignment at CM002469.1:634789..636923+ (Nannochloropsis gaditana)
ATGTACAGTTATAAAGTCGATGCTGGAGGCTCATGTTTTGtgcgtccttt
ccctccttccctccctcattccctcctaTTTCTCTTCCCACTCCCCAGTT
GCGACACATGCATCCAGCGGGAATTTGCCCGAAAAACCCGTGGTGGCTTT
CGTTGCCCTGCCTGCGCCCGGCTtgggaaggacagggaggtgcTGCGTCA
GAGTTTAGAGACCAAGTCCCGGGAGCAATTAATGGTGGAATTGGATacaa
aatggcgcgaacgaGTCTTGGAGGTGTacggaaagaaggaggaggacttt
gGGGGTAACGAGGATGCCTATAATGACTACatcgaggagcgggaggaccT
GATCTATACACTGGCTAACCGGCTCTTCATCGATGAGAACGAGGTGCGGG
AGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGTCGCCGTC
GCTAGATATAGAGCCCGGCGGGAAGaGGATCGACGGCGCTCCGCTCGAGC
TGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTCCGACGCGCACACg
agcaggagaagcgcgaattggaaaaattgcgcgaattTCGCTTGCAAATT
CAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGGTCGAACTAGTggg
cagaggcgggggagggagggcggatggtgaggaggaagaggaagacgagg
acgtggcgcgGGCACtggggcgagagggagggagggggggagggttggag
ggaggcggggcaggaatGAGCGGAGCGAGCGCTTTCTGTACCAATCTCCG
CGTCCTGGTcgggccccccccccggatcgtggtggtggagggagggcggg
agacaggaggggagggagggaaggagggcattgCCAAGGCGAGCGGTTGG
CCTTTGTCCCTGCGGTATAAACggtgctgggaggaggccatcgCGTCCTT
GTTCTTGGGTTcgggggaaacgagggggaggttggggcgGACGTTTTATC
GCtagATGTACAGTTATAAAGTCGATGCTGGAGGCTCATGTTTTGtgcgt
cctttccctccttccctccctcattccctcctaTTTCTCTTCCCACTCCC
CAGTTGCGACACATGCATCCAGCGGGAATTTGCCCGAAAAACCCGTGGTG
GCTTTCGTTGCCCTGCCTGCGCCCGGCTtgggaaggacagggaggtgcTG
CGTCAGAGTTTAGAGACCAAGTCCCGGGAGCAATTAATGGTGGAATTGGA
TacaaaatggcgcgaacgaGTCTTGGAGGTGTacggaaagaaggaggagg
actttgGGGGTAACGAGGATGCCTATAATGACTACatcgaggagcgggag
gaccTGATCTATACACTGGCTAACCGGCTCTTCATCGATGAGAACGAGGT
GCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGAGGTCG
CCGTCGCTAGATATAGAGCCCGGCGGGAAGaGGATCGACGGCGCTCCGCT
CGAGCTGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTCCGACGCGC
ACACgagcaggagaagcgcgaattggaaaaattgcgcgaattTCGCTTGC
AAATTCAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGGTCGAACTA
GTgggcagaggcgggggagggagggcggatggtgaggaggaagaggaaga
cgaggacgtggcgcgGGCACtggggcgagagggagggagggggggagggt
tggagggaggcggggcaggaatGAGCGGAGCGAGCGCTTTCTGTACCAAT
CTCCGCGTCCTGGTcgggccccccccccggatcgtggtggtggagggagg
gcgggagacaggaggggagggagggaaggagggcattgCCAAGGCGAGCG
GTTGGCCTTTGTCCCTGCGGTATAAACggtgctgggaggaggccatcgCG
TCCTTGTTCTTGGGTTcgggggaaacgagggggaggttggggcgGACGTT
TTATCGCtagATGTACAGTTATAAAGTCGATGCTGGAGGCTCATGTTTTG
tgcgtcctttccctccttccctccctcattccctcctaTTTCTCTTCCCA
CTCCCCAGTTGCGACACATGCATCCAGCGGGAATTTGCCCGAAAAACCCG
TGGTGGCTTTCGTTGCCCTGCCTGCGCCCGGCTtgggaaggacagggagg
tgcTGCGTCAGAGTTTAGAGACCAAGTCCCGGGAGCAATTAATGGTGGAA
TTGGATacaaaatggcgcgaacgaGTCTTGGAGGTGTacggaaagaagga
ggaggactttgGGGGTAACGAGGATGCCTATAATGACTACatcgaggagc
gggaggaccTGATCTATACACTGGCTAACCGGCTCTTCATCGATGAGAAC
GAGGTGCGGGAGGCAGAAATCCGCCTGGAGAAAGAACGCAAGACCAACGA
GGTCGCCGTCGCTAGATATAGAGCCCGGCGGGAAGaGGATCGACGGCGCT
CCGCTCGAGCTGTGGAAAGCTTTGAACAAGAATGGGCCGAACAAGTCCGA
CGCGCACACgagcaggagaagcgcgaattggaaaaattgcgcgaattTCG
CTTGCAAATTCAACAGAAGAATTTGGGAGAGCGCGATCAGGTGACGGTCG
AACTAGTgggcagaggcgggggagggagggcggatggtgaggaggaagag
gaagacgaggacgtggcgcgGGCACtggggcgagagggagggaggggggg
agggttggagggaggcggggcaggaatGAGCGGAGCGAGCGCTTTCTGTA
CCAATCTCCGCGTCCTGGTcgggccccccccccggatcgtggtggtggag
ggagggcgggagacaggaggggagggagggaaggagggcattgCCAAGGC
GAGCGGTTGGCCTTTGTCCCTGCGGTATAAACggtgctgggaggaggcca
tcgCGTCCTTGTTCTTGGGTTcgggggaaacgagggggaggttggggcgG
ACGTTTTATCGCtag back to top
|