EWM23840.1, cds6832 (CDS) Nannochloropsis gaditana

Overview
NameEWM23840.1
Unique Namecds6832
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:635267..635618 +
Alignment locationCM002469.1:635896..636018 +
Alignment locationCM002469.1:636177..636706 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23840.1
Productcdk-activating kinase assembly factor mat1
Orig transcript idgnl|cribi|Naga_100273g5.3656.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:635267..635618 +
CM002469.1supercontigCM002469.1:635896..636018 +
CM002469.1supercontigCM002469.1:636177..636706 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
GO:0007049cell cycle
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR004575MAT1/Tfb3
IPR015877Cdk-activating_kinase_MAT1_cen
Homology
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|585105108|gb|EWM23840.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana])

HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MYSYKVDAGGSCFVRPFPPSLPHSLLFLFPLPSCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 334
            MYSYKVDAGGSCFVRPFPPSLPHSLLFLFPLPSCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct:    1 MYSYKVDAGGSCFVRPFPPSLPHSLLFLFPLPSCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 334          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|585105107|gb|EWM23839.1| (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana])

HSP 1 Score: 588.571 bits (1516), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 334
            CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR
Sbjct:   53 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|1210517312|dbj|GAX23569.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris])

HSP 1 Score: 86.2705 bits (212), Expect = 9.136e-16
Identity = 63/183 (34.43%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 215
            C +C+ REFAR  R  F CP C+ + K     R +L  ++ + +  E DT WR RVL+VY K E DF    + YN+Y+E  ED+I+++ N    +E    E + +++   + N+ A+   +++R  D  RS +   + EQ  AEQ+R  A E EK   +  R+++ +  +  LGER++V+ EL
Sbjct:   40 CQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTEADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 209          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|1210526247|dbj|GAX15165.1| (CDK-activating kinase assembly factor MAT1 [Fistulifera solaris])

HSP 1 Score: 85.5001 bits (210), Expect = 2.251e-15
Identity = 62/183 (33.88%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVR-RAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 215
            C +C+ REFAR  R  F CP C+ + K     R +L  ++ + +  E DT WR RVL+VY K + DF    + YN+Y+E  ED+I+++ N    +E    E + +++   + N+ A+   +++R  D  RS +   + EQ  AEQ+R  A E EK   +  R+++ +  +  LGER++V+ EL
Sbjct:   44 CQSCVDREFAR--RREFPCPVCSTMVK-----RVTLTQRTLDDVQCEKDTSWRRRVLKVYNKTQADFETLLE-YNNYLEMVEDMIFSIVN----EEPNAEECKNKIKDYEQANKSAIVIRQSQR-ADEERSIQDRIAAEQREAEQMRLLAQEDEKYMAQAKRKWKQESTEVLLGEREEVSAEL 213          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|695446304|ref|XP_009534447.1| (hypothetical protein PHYSODRAFT_338355 [Phytophthora sojae] >gi|348669764|gb|EGZ09586.1| hypothetical protein PHYSODRAFT_338355 [Phytophthora sojae])

HSP 1 Score: 85.5001 bits (210), Expect = 3.256e-15
Identity = 60/181 (33.15%), Postives = 102/181 (56.35%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 213
            CD CI+REF  +      CPAC     ++ V +  L+ K+ E+L    +T  R++V + Y K E+DF    D YNDY+E  E+LI+ L   ++ D+NE   A+ + ++ R+ N +A+A   A++ ++ RR A+ +   +Q  AE+ R+  ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:   54 CDHCIKREFQHQRE--IACPAC-----EKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLETLENLIFDL---VYGDDNEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRQLQQREDSQFEADLERQKAQLMEVALGERDESDV 222          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|299469952|emb|CBN76806.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.5741 bits (205), Expect = 1.199e-14
Identity = 79/291 (27.15%), Postives = 131/291 (45.02%), Query Frame = 0
Query:   36 TCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVELVGRGGGGRADGEEEEEDEDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIA-------KASGWP-LSLRYKRCWEEAIASLF 318
             C ++E  R  R  F CPAC       +V R  L  K+ ++L V  D   R+R+ +++ + EEDFGG+  AYNDY+E  ED+IY L +    D+ E   A+  + +    +   + +  AR+ +  +     + +  Q+   +      +E R+ +  R+ +L+ Q+  LGERD VT  + G G     D            +L  EG  G G E G  G +  +A    +R ++  P  +   +  ++T        +        KA+  P  +L  KR W E + SLF
Sbjct:   38 ACAEKELLR--RKTFPCPAC-----QVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSG---DKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATM-GDGLFLFLD------------SLTGEGLDGAGGEPGANG-NAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|567965850|gb|ETK91318.1| (hypothetical protein L915_05066 [Phytophthora parasitica] >gi|568023843|gb|ETL97891.1| hypothetical protein L917_04906 [Phytophthora parasitica] >gi|570332242|gb|ETO80190.1| hypothetical protein F444_05233 [Phytophthora parasitica P1976])

HSP 1 Score: 82.0333 bits (201), Expect = 4.601e-14
Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 213
            CD CI+REF  +      CPAC +      V +  L+ K+ E+L    +T  R++V + Y K E+DF    D YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ N +A+A   A++ ++ RR A+ +   +Q  AE+ R   ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:   44 CDHCIKREFQHQRE--ISCPACQK-----PVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|675187515|ref|XP_008902642.1| (hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|566028526|gb|ETI51437.1| hypothetical protein F443_05201 [Phytophthora parasitica P1569] >gi|567994565|gb|ETL44720.1| hypothetical protein L916_05023 [Phytophthora parasitica] >gi|568054260|gb|ETM51051.1| hypothetical protein L914_05019 [Phytophthora parasitica] >gi|568096936|gb|ETN11680.1| hypothetical protein PPTG_09394 [Phytophthora parasitica INRA-310] >gi|570956174|gb|ETP21213.1| hypothetical protein F441_05201 [Phytophthora parasitica CJ01A1] >gi|570991365|gb|ETP49141.1| hypothetical protein F442_05249 [Phytophthora parasitica P10297] >gi|970645554|gb|KUF85988.1| hypothetical protein AM588_10001059 [Phytophthora nicotianae] >gi|970647193|gb|KUF87089.1| CDK-activating kinase assembly factor MAT1 [Phytophthora nicotianae])

HSP 1 Score: 82.0333 bits (201), Expect = 4.923e-14
Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 213
            CD CI+REF  +      CPAC +      V +  L+ K+ E+L    +T  R++V + Y K E+DF    D YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ N +A+A   A++ ++ RR A+ +   +Q  AE+ R   ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:   44 CDHCIKREFQHQRE--ISCPACQK-----PVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFD-TLDEYNDYLEMLENLIFDL---VYGDDTEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRLLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|301111189|ref|XP_002904674.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095991|gb|EEY54043.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 80.4925 bits (197), Expect = 1.570e-13
Identity = 58/181 (32.04%), Postives = 101/181 (55.80%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELE-KLREFRLQIQQKNLGERDQVTV 213
            CD CI+REF  +      CPAC +      V +  L+ K+ E+L    +T  R++V + Y K E+DF   E+ YNDY+E  E+LI+ L   ++ D+ E   A+ + ++ R+ + +A+A   A++ ++ RR A+ +   +Q  AE+ R+  ++E  + E  L   + Q+ +  LGERD+  V
Sbjct:   44 CDHCIKREFQHQRE--ISCPACQK-----PVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDFDTLEE-YNDYLETLENLIFDL---VYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAE-QQRLAEERRQLQQKEDSQFEADLERQKAQLMEVALGERDESDV 212          
BLAST of EWM23840.1 vs. NCBI_GenBank
Match: gi|219122830|ref|XP_002181741.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407017|gb|EEC46955.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 78.5666 bits (192), Expect = 5.283e-13
Identity = 60/183 (32.79%), Postives = 96/183 (52.46%), Query Frame = 0
Query:   34 CDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRR-AHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL 215
            C++CI RE  RK    F CP C        V R +L  +S + +  E DT WR RVL+V+ K E DF    + +N+Y+E+ ED+IY++ N     + E  +A+I+  +     E+ +   R  +  D  RS +   + EQ   E++RR A ++EK      +  + +  Q  LGER++V+ EL
Sbjct:   44 CNSCIDRELVRKRE--FPCPVC-----QTPVKRVTLTVRSLDDVQCEKDTSWRRRVLKVFNKTEPDFSSLLE-FNNYLEQVEDMIYSIVNEE--PDAEACKAKIKEYENAHKTEIVI---RQSQRADEERSIQDRIAAEQRSTERLRREAFDEEKAVANAKKRLKQESTQVLLGEREEVSAEL 213          
The following BLAST results are available for this feature:
BLAST of EWM23840.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105108|gb|EWM23840.1|0.000e+0100.00cdk-activating kinase assembly factor mat1 [Nannoc... [more]
gi|585105107|gb|EWM23839.1|0.000e+0100.00cdk-activating kinase assembly factor mat1 [Nannoc... [more]
gi|1210517312|dbj|GAX23569.1|9.136e-1634.43CDK-activating kinase assembly factor MAT1 [Fistul... [more]
gi|1210526247|dbj|GAX15165.1|2.251e-1533.88CDK-activating kinase assembly factor MAT1 [Fistul... [more]
gi|695446304|ref|XP_009534447.1|3.256e-1533.15hypothetical protein PHYSODRAFT_338355 [Phytophtho... [more]
gi|299469952|emb|CBN76806.1|1.199e-1427.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|567965850|gb|ETK91318.1|4.601e-1432.60hypothetical protein L915_05066 [Phytophthora para... [more]
gi|675187515|ref|XP_008902642.1|4.923e-1432.60hypothetical protein PPTG_09394 [Phytophthora para... [more]
gi|301111189|ref|XP_002904674.1|1.570e-1332.04conserved hypothetical protein [Phytophthora infes... [more]
gi|219122830|ref|XP_002181741.1|5.283e-1332.79predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6848rna6848Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications