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Properties
| Property Name | Value |
|---|
| Product | RNA helicase, DEAD-box type |
| Orig transcript id | gnl|cribi|Naga_100082g22.9372.mrna |
| Orig protein id | gnl|cribi|Naga_100082g22.9372 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002469.1 | supercontig | CM002469.1:422424..425080 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6752 ID=rna6752|Name=rna6752|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp
TGATTCAGGCCCGCAAGCATATCGTACGCAGAGCTCAGCCCTTCCTCCCT
GGAGGGAAGTATTTTGGGTATCATACATCTCAAATAACTCCAGACTGTCC
CTGCCCCTATGATACAACCTCCTCACACTCAACAATCCCTACGACGAATT
CTTTCAGACCGATATAAAGCACAAATGCGATAATGGAAGTCTCCTTGAAC
TGATGGGAGCATAAAACGATAGAGTCGCATATCTAAGAGCTATTCATTCT
TCGCCTGCCATGACGAGCAACCATGATGTAGAAGCGGAACCGGATTGTTT
TTTCAATCCGGATCTTTTCGTAAACAAATCACTTGTCAAGGTGAACTACT
CGATACAAGATCTTGAGCAGCAGCCGGTCTGGGTATCAGCAGCTTCGTGC
ACAGACCATGATCAAACTGGTGAAATTGTATGGCCGATATCAATTTTCTT
GTCCTGGTTTGTTGCTGCACGGCGGGACCTTTTTCGCGACCAACAAGTTA
TTGAATTGGGTGCAGGATGTGCAGGCTTGCCTGGTCTGATCGCTTCCCGC
TTCGCAAAAGATGTGCTTGTCACAGATGGGAACTACTTGGTCCTTGAGAC
CTTGCAGCGCAACGTGGCAGAAACAAGAGGCATCTTCAGGACTATCACTG
ACCACTCCTGCGAACCTGGCGAGCCAGTGGAACCCATGTTCAAATCCACG
TGTTACGGACAAAGTACTTATGACTGTAGTGTCGGCGTCGGGGATGAAAA
AGCATTGAACAACAATTCTAGCGCTGTCGCGGTCTCTAGGGATGCCCTGA
CATCTTGCTGGCACGAGAAGGGCAAGCTGGAGACCCGAACACTCCTGTGG
GGCGACAAGGAAAGTGTCGAGGCTGTCGTAAACGAAGGGTGGCGACCTCA
AATTCTTTTGGGAGCGGATATCGTATGTTGGATAGATTTTGTGACGCCCT
TGCTACAGACTGTCAAATTCTTGTTCTTGCATGCCCCAGACCGGGAACGC
GCGGTCCTCTTCTTAGGATTTGTGAATCGTGCGAACTCCACCGAGCGTTT
CCTGTATGCACAAGCGCGGGCATTTGGCATGTCGGTTAAAAGAGTGCCAC
ACGAAACATTTATGCCGATCGAAAAACGATGCTGGCCATCCGAGTTGCAG
ACAGCGCAGGAGCTCGAGGTTCTTTCTATTTCACTGGACCCGACGCTTGA
AGGATACGATTCTCCTGTGTCTTTCGAGGAAAGCAGAGCCTACGACTGGG
CGACACCGTGTTGATCAGATGAACTGTAGATAATTAACAGCAAGAAGCCA
GGATAAGAGGGAAGCGAGCGGATGCAGGATCTTGGTTGCGTACCCCCTTC
GCCGTCGCGGAACGAAGAAAAAAAAATGTAAAATATACTTTCAAAAATAT
ACCCGAAGTTGTGAAACTTTTCTTTGCGCTGACCGGGATTCGAACCAGGA
AGGTTATGAGAGCTCCTTGAGAGCAGGCAAACTATCCTCCAAACCCGGGC
CTCCTCCTTACAGCGAATCGAACTC back to topprotein sequence of rna6752 >rna6752-protein ID=rna6752-protein|Name=rna6752|organism=Nannochloropsis gaditana|type=polypeptide|length=689bp
MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSS
KHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLP
LSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFC
IPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADL
SYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLIL
DEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRP
GYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKV
IVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGI
LFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILV
LTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAA
YQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMG
LRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTH
GGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGK
GGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR back to topmRNA from alignment at CM002469.1:422424..425080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6752 ID=rna6752|Name=rna6752|organism=Nannochloropsis gaditana|type=mRNA|length=2657bp|location=Sequence derived from alignment at CM002469.1:422424..425080+ (Nannochloropsis gaditana)
GAAAGCATCTGGTGAATCTCACTTCATATAATTCCCACACACACCACTTT
CACTTGCGCATACACATGCTCAAAAATTATGGATGCGGCCGTTTCAAAAT
GCCCATTGCTATGATTGTAAGTTTCAATAGTCGCACGACAAACCAAGACC
GCACCTTGACCTTTTACAAGCTGGGACGGACACACGGGGGCCAAGAATTG
CCCcggccacctcccgcccccgtcgcTCCTTGCTTGTTTCCTCCACACGC
ACGCGTATACTACCTTGATCGCTCTCCTTTCACAGCACATGCCATATCCC
ATCACGAATCACCTCACAGTCAGTTCTTACAATCGCAGGCGAGTGGCAAG
CATAGTCCATGCTTGTTCGCCGTGCGGTGTTCAGACTCACAAACCAGCAT
CCTTGCCGCCGCGCAGTCCTTCTTTcagtcctccttcccgctgtACTCAT
GACCTCACGTGGAAACGCTTTCGTCCAGCCCTCGCCTCACCGCGGTAAAC
ACAGCTCTAAGCACCACCATCAGCGAATTGTTGATCAACAGCATCAGTAT
CAGCAATTGCAGCAACAGCGTGACCAGCATACTCACCCGACCTTGCCATC
TGCGCCGGCTACTAGTGCCTCTAACCATTTAACAGACGCCTTGTTTCGCG
ATTTACCCTTGTCGGACAATACACAGCGAGCACTTGCGGAAACTTTGGGA
TTCGATCGCATGACTCACGTCCAGGAAGCTACCATGCCTCTGGTCCTGGC
AGGCAATGACGTTATGGCCAAGGCGAAGACTGGTACGGGGAAGACTCTGG
CATTTTGCATCCCGGCCCTCGAACAACTTCGGCAGAGACCTCCTCGTGCA
GGCAGCATCTCTGTCCTGGTGCTCTCGCCAACCCGTGAGCTTGCCCAGCA
AATACATGTGGAGGCGTCCAAGCTCTTGACTTTCCAGAAGGCTCTCAAAG
CGGACCTTAGTTATGGGGGGACCAACGTCAATGCCGAGCGAAAGCGCCTC
TTGCAACGGCCTCCGGACATCCTTGTGGCGACACCAGGCCGCCTGCTGGA
CCATTTAGAGAACAACGGCCTGGCACCCTATTTCCAGGACCTGCGCGTCC
TGATtttggacgaggcggaccAGCTTCTTGACATGGGTTTCAGACCTGCC
ATCGAGAAGATAATCGGCTTCTTGCCCTCTCACGCTCGACAGACTCTTTT
GTTCAGTGCTACCATGCCAAAGGGAGTCAAGGAAGTCGCGGGCTTGGCCA
TGCGCCCAGGCTATAAATTCATCGACACGGTGggcgcggaggagcaggac
acAAATATCCAGGTGACGCAGTCGGCGGCCATCTTGCCTTTAGACCAGCA
CTTTGCTTACCTGCACACTCTTCTAAGCAAGGCTAAGCAAGATCCAGCCC
ACAAGGTCATCGTATTCTTCACGACCGCGCGGCTGGTCGGCTACTACTGC
GAGTTGATGGGTAAGGCGGGGATCCAGGCCATGGAGATCCATTCGCGCAA
GTCGCAGGCCACCCGTACCAAGACCTCGGATCAATTTCGCGTGGCGAAGT
CCGGcattctcttctcctctgacGTGAGTGCTCGTGGCGTGGACTACGAG
GGAATTACTCACGTTGTCCAGATGGGCGTGCCCAGCAACAGGGAAATGTA
CGTCCATCGGCTGGGCCGCACGGGGCGcgccgggagggacggacagGGCA
TCCTTGTGCTGACCCCCGACGAGAGCTTTTTCCTTCGGGATTTGAAGGAC
TTGCCTGTGAGCATGATTCCCACGCAGGCTTGCCAGCCCGACCAGGCTAG
CCTGGAGGCCGTGCGGCGCGCGATCCCGTCGGTGGACGAGCGCGCCGTCG
GTGCCGCCTATCAGGCATGGCTGGGTTTTTACAACTCGGTGCCGGGCTTG
AAATGGAGCAAGACTCGGcttgtggaggaggcgaatgcCTTTGCTCTCAT
CATGGGGTGCAAGGACCAGCCCCCTGCGCTTCTGAAGAAGACCGTGGGCA
TGATGGGACTCAGAGGCGTGCCTGGATTGAGGATCGAGGGCAGCCTCCCG
GGTGCGAGTGGTCGCAATGGCGGACATGCAGGCGGTGGTAACAATGTAAG
GAAGCGCACGCCAAGCGTTTCATCCGATGCCGggggcaggcgcgggaggg
acaCTCACGGGGGCGGTCGTGTTGGGGAGCCGAGCCAGAAGAGGCCTCCT
CACGCGAACGGACAGAGCCCCGGCCAGGCTCAGTCATATAACTTTCCGAA
GCCTGATGTTAGGATGGGCAgcgagggggcaggaagaggagatggaatCT
CGGGTAAGGGAGGCCTAGGCCGGGAGAAACCTTATCGCGatagggggggg
agagggagcacgCCGactggcggaggaagcggaagaggaggggggcgcaA
AGGGGGCGGGTATGATGGAAGTAGGTAAGGGAAGGAGTTtccggagaaag
agggattGCAAAGGAAAGGTTGTGGTCGCGTCTGAGCGGTCAAGGTACCC
AAAACGCACATGAATTTGACGGGCAATTATTGTGTAGCATGACGAAGTAG
CAATTTTTACGATATCCGCTTTAAGTCAAACCTGTCGCCGGGCAGCTGGT
CATCTTACACAAAGTAAAAGCATGCCAAATCGGCCCTCTCGGCCACTCTG
GATATCT back to topCoding sequence (CDS) from alignment at CM002469.1:422424..425080+ >rna6752 ID=rna6752|Name=rna6752|organism=Nannochloropsis gaditana|type=CDS|length=2070bp|location=Sequence derived from alignment at CM002469.1:422424..425080+ (Nannochloropsis gaditana)
ATGCTTGTTCGCCGTGCGGTGTTCAGACTCACAAACCAGCATCCTTGCCG
CCGCGCAGTCCTTCTTTcagtcctccttcccgctgtACTCATGACCTCAC
GTGGAAACGCTTTCGTCCAGCCCTCGCCTCACCGCGGTAAACACAGCTCT
AAGCACCACCATCAGCGAATTGTTGATCAACAGCATCAGTATCAGCAATT
GCAGCAACAGCGTGACCAGCATACTCACCCGACCTTGCCATCTGCGCCGG
CTACTAGTGCCTCTAACCATTTAACAGACGCCTTGTTTCGCGATTTACCC
TTGTCGGACAATACACAGCGAGCACTTGCGGAAACTTTGGGATTCGATCG
CATGACTCACGTCCAGGAAGCTACCATGCCTCTGGTCCTGGCAGGCAATG
ACGTTATGGCCAAGGCGAAGACTGGTACGGGGAAGACTCTGGCATTTTGC
ATCCCGGCCCTCGAACAACTTCGGCAGAGACCTCCTCGTGCAGGCAGCAT
CTCTGTCCTGGTGCTCTCGCCAACCCGTGAGCTTGCCCAGCAAATACATG
TGGAGGCGTCCAAGCTCTTGACTTTCCAGAAGGCTCTCAAAGCGGACCTT
AGTTATGGGGGGACCAACGTCAATGCCGAGCGAAAGCGCCTCTTGCAACG
GCCTCCGGACATCCTTGTGGCGACACCAGGCCGCCTGCTGGACCATTTAG
AGAACAACGGCCTGGCACCCTATTTCCAGGACCTGCGCGTCCTGATtttg
gacgaggcggaccAGCTTCTTGACATGGGTTTCAGACCTGCCATCGAGAA
GATAATCGGCTTCTTGCCCTCTCACGCTCGACAGACTCTTTTGTTCAGTG
CTACCATGCCAAAGGGAGTCAAGGAAGTCGCGGGCTTGGCCATGCGCCCA
GGCTATAAATTCATCGACACGGTGggcgcggaggagcaggacacAAATAT
CCAGGTGACGCAGTCGGCGGCCATCTTGCCTTTAGACCAGCACTTTGCTT
ACCTGCACACTCTTCTAAGCAAGGCTAAGCAAGATCCAGCCCACAAGGTC
ATCGTATTCTTCACGACCGCGCGGCTGGTCGGCTACTACTGCGAGTTGAT
GGGTAAGGCGGGGATCCAGGCCATGGAGATCCATTCGCGCAAGTCGCAGG
CCACCCGTACCAAGACCTCGGATCAATTTCGCGTGGCGAAGTCCGGcatt
ctcttctcctctgacGTGAGTGCTCGTGGCGTGGACTACGAGGGAATTAC
TCACGTTGTCCAGATGGGCGTGCCCAGCAACAGGGAAATGTACGTCCATC
GGCTGGGCCGCACGGGGCGcgccgggagggacggacagGGCATCCTTGTG
CTGACCCCCGACGAGAGCTTTTTCCTTCGGGATTTGAAGGACTTGCCTGT
GAGCATGATTCCCACGCAGGCTTGCCAGCCCGACCAGGCTAGCCTGGAGG
CCGTGCGGCGCGCGATCCCGTCGGTGGACGAGCGCGCCGTCGGTGCCGCC
TATCAGGCATGGCTGGGTTTTTACAACTCGGTGCCGGGCTTGAAATGGAG
CAAGACTCGGcttgtggaggaggcgaatgcCTTTGCTCTCATCATGGGGT
GCAAGGACCAGCCCCCTGCGCTTCTGAAGAAGACCGTGGGCATGATGGGA
CTCAGAGGCGTGCCTGGATTGAGGATCGAGGGCAGCCTCCCGGGTGCGAG
TGGTCGCAATGGCGGACATGCAGGCGGTGGTAACAATGTAAGGAAGCGCA
CGCCAAGCGTTTCATCCGATGCCGggggcaggcgcgggagggacaCTCAC
GGGGGCGGTCGTGTTGGGGAGCCGAGCCAGAAGAGGCCTCCTCACGCGAA
CGGACAGAGCCCCGGCCAGGCTCAGTCATATAACTTTCCGAAGCCTGATG
TTAGGATGGGCAgcgagggggcaggaagaggagatggaatCTCGGGTAAG
GGAGGCCTAGGCCGGGAGAAACCTTATCGCGataggggggggagagggag
cacgCCGactggcggaggaagcggaagaggaggggggcgcaAAGGGGGCG
GGTATGATGGAAGTAGGTAA back to top
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