EWM23940.1, cds6736 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|585105225|gb|EWM23940.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 1406.73 bits (3640), Expect = 0.000e+0 Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0
Query: 1 MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR 689
MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR
Sbjct: 1 MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR 689
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|255089893|ref|XP_002506868.1| (predicted protein [Micromonas commoda] >gi|226522141|gb|ACO68126.1| predicted protein [Micromonas commoda]) HSP 1 Score: 478.404 bits (1230), Expect = 1.028e-159 Identity = 254/463 (54.86%), Postives = 324/463 (69.98%), Query Frame = 0
Query: 107 RALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPP-RAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAK-QDPA-HKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLP 564
RA+ E G+ T VQ+ T+P +L G DV+A+AKTG+GKT+AF +P++E L + P RAG +SVLVLSPTRELA QIH E+ KLL F ALK+ + +GGTN+ +ER R+ + D LVATPGRL+DH E +GL P Q+L+VL+LDEADQLL+MGF+P+I+KI+GF+P RQTLLFSAT+P VK++A A+RPGY ++D VG E+ TN QVTQ + PLD H L L++ + Q+P HKVI FF TAR EL G EIHSRKSQ RTK +D FR AK G++ SSDVSARG+DY +T VVQ+G+PS+RE Y+HRLGRT RAG+ G+G+L+L P E FF R LKDLP++ P + PD L AV A+ VD R AY AWLGFYNS G + W K RLV+E N +AL ++ C P +LKKTVGMMGL+GVPGL + LP
Sbjct: 2 RAIDEVFGYTHATAVQDQTLPPILKGLDVLARAKTGSGKTIAFLVPSIETLLRSPAGRAGDVSVLVLSPTRELASQIHEESLKLLKFH-ALKSQVVFGGTNIKSERSRMNSQRCDFLVATPGRLIDHFETSGLQPRCQNLKVLVLDEADQLLEMGFKPSIDKILGFIPRQ-RQTLLFSATVPNQVKQIAANALRPGYAYVDCVGEEDSATNTQVTQWLTMAPLDDHLPLLVQLVNMHQAQNPVEHKVICFFPTARATQLAAELFQALGKPVTEIHSRKSQGHRTKAADAFREAKCGVMMSSDVSARGLDYPDVTLVVQVGLPSSREQYIHRLGRTARAGKTGEGLLLLAPHEEFFTRQLKDLPITPAPA-SVDPD--VLNAVNNALRRVDVRTKEQAYVAWLGFYNSSTGKMGWDKKRLVDEGNRYALEVLQCPGL-PGILKKTVGMMGLKGVPGLNLVSELP 458
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|552812654|ref|XP_005843752.1| (hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis] >gi|307103390|gb|EFN51650.1| hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis]) HSP 1 Score: 473.781 bits (1218), Expect = 2.394e-156 Identity = 259/498 (52.01%), Postives = 328/498 (65.86%), Query Frame = 0
Query: 85 TSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGS-ISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQ------------------VTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGS 562
T ++HLT F LPL+ +QR+L E L F+ +T VQEAT+P VL G DVMA+AKTGTGKT+AF IPA+E L + PPR+GS ISVLVLSPTRELA QI EA LL F KA + YGGTN+N+ER RL R D+LVATPGRL+DHLEN+GLA Q +R L+LDEADQLL+MGFRPAIEKI+ FLP +RQTLLFSATMP+ V++VAGLA++ + FIDT+G E+ TN Q V QS A++P++ F + ++L + A+ P HK+I + R K S +FR A S ILFSSDVSARGVDY +T V+Q+G+PS+RE Y+HRLGRT RAGR G G+L+L P+E F+R L+DLP++ P P + AV+ + V +R AY AWLGFYNS G+ WSK LV++AN F+ +MG QPP L KKT+GMMGL+GVPGLRI+ S
Sbjct: 60 TGPTSHLTTTSFASLPLAAASQRSLTEVLRFEFLTSVQEATLPAVLNGGDVMARAKTGTGKTMAFLIPAVEALCRAPPRSGSGISVLVLSPTRELASQIAKEAEALLRFHP-YKAQVVYGGTNINSERNRLAGRC-DVLVATPGRLIDHLENSGLAATLQGIRTLVLDEADQLLEMGFRPAIEKILSFLPK-SRQTLLFSATMPQAVQQVAGLALKKQHAFIDTIGEEDSATNTQARLPAAPREAPRPLHSPRVEQSYALVPMEDQFTAIFSVLRRHAQTTPDHKII--------------------------------SARDKASKEFRTATSAILFSSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGVGLLILMPEEQHFMRQLRDLPLTAEPGVPTTPQDVA--AVKAGLARVGDRLPDMAYAAWLGFYNSAKGMGWSKPELVQQANRFSAVMGL-SQPPPLQKKTIGMMGLKGVPGLRIDDS 519
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|971514611|dbj|GAQ83598.1| (DEAD-box RNA helicase family protein [Klebsormidium nitens]) HSP 1 Score: 471.47 bits (1212), Expect = 1.936e-153 Identity = 248/477 (51.99%), Postives = 333/477 (69.81%), Query Frame = 0
Query: 91 LTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGS---ISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPY-FQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPL-DQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASL-EAVRRAIPSVDERAVGAAYQAWLGFYNS-VPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIE 560
+T+ F LS T +AL E LG+++MT VQEAT+P L G DV+AKAKTGTGKTL F IPA+E++ R R S I VLV+SPTRELAQQI EA LL + L++++ +GG+N+N++R+RL +P +IL+ TPGRL DHL+N P + L+VLILDEAD LL+MGFRPAIEKI+ +LP RQTLLFSAT+P V V+ LA++P + FIDTVG E + TNIQV QS A++PL DQ A H L +++ KV+VF TTAR Y +L G A+EIHSRKSQA RT+TS++FR +LF+SDVSARGVDY ++ V+Q+G+P+++ Y+HRLGRT RAG++G+GIL+L P E +FL+ + DLP+ P +A + + V+R + ++E+ + AY AWLGFYN+ L WSK LV++AN +A +PPALL++TVGMMGL+GVPGLRIE
Sbjct: 269 ITETRFDSFNLSPPTIKALHEDLGYEKMTVVQEATLPACLDGKDVLAKAKTGTGKTLGFLIPAIERILARGGRRSSNPDIEVLVISPTRELAQQIEAEAKALLKYH-PLRSEIIFGGSNINSDRRRLESQPAEILICTPGRLQDHLDNTPSVPQRLKGLKVLILDEADNLLNMGFRPAIEKILRYLPGQ-RQTLLFSATIPPQVHTVSKLALKPNHAFIDTVGEETEQTNIQVKQSYAVIPLADQIGATFHILRQHIREERNFKVLVFLTTARATQLYAQLFQGIGFPALEIHSRKSQAARTRTSEEFRKGSRVVLFTSDVSARGVDYPDVSMVLQVGLPTDKAQYIHRLGRTARAGKEGEGILMLAPYEKYFLKQVADLPLEQY---GPVPIEADIRQEVQRGMSRLEEKTLVQAYVAWLGFYNTFCKNLGWSKADLVQQANFYATECLGMSEPPALLRRTVGMMGLKGVPGLRIE 740
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|168051595|ref|XP_001778239.1| (predicted protein [Physcomitrella patens] >gi|162670336|gb|EDQ56906.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 454.136 bits (1167), Expect = 2.191e-150 Identity = 239/471 (50.74%), Postives = 323/471 (68.58%), Query Frame = 0
Query: 96 FRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQ-LRQ--RPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENN-GLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSG-ILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEA-VRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRI 559
F + +S + +AL E GFD MT VQ T+P++L G DV+A+AKTGTGKT+AF +PA+E LR+ R + SI+VL + PTRELA Q+ EA L TF + L + GGTN+ E RL + P ILV TPGRLLDH++++ + +DL+VLILDEADQLLDMGFR ++ II LP+ RQTLLFSAT+P VK + +A++ GY +IDTVG + +T+++V Q ++PL++ + L+ LL + A +DP KV+VF T+A+ + E K G+ +EIHSRKSQ+ RTK S++FR G I+F+SDVSARGVDY +T VVQ+G P++RE Y+HRLGRTGRAG++G+G+L+LTP E FLR L D+ ++ PD +EA V +A+ +DE AYQAWLG+YNS LKW K LV+ AN F+ +G + QPPALLKKTVGMMGLR VPGL +
Sbjct: 14 FDNFKISPLSLKALHEVAGFDTMTVVQNETLPVILKGTDVLARAKTGTGKTVAFLLPAIESILREGSRKVKRNSINVLAICPTRELATQVAAEAKMLTTFHRDLGVQVVIGGTNMATESARLQRSPCQILVGTPGRLLDHIQSDRAVRSQLEDLKVLILDEADQLLDMGFRKSLNGIIKALPTE-RQTLLFSATVPNEVKSMCEIALKKGYTYIDTVGEDNVETHMKVQQEYLLVPLEKQLSILYALLKEHAVEDPDFKVLVFCTSAKCTALFAEFYKKLGMNTLEIHSRKSQSFRTKASNEFRNHPGGVIMFTSDVSARGVDYPDVTFVVQVGTPASREQYIHRLGRTGRAGKEGRGLLLLTPWEEVFLRSLNDITITQSKGTEVSPD---IEAKVNKALGYIDEDTKSKAYQAWLGYYNSCRLLKWDKQTLVKRANLFSSTLGLR-QPPALLKKTVGMMGLRNVPGLTV 479
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|612389873|ref|XP_007510457.1| (predicted protein [Bathycoccus prasinos] >gi|412990618|emb|CCO17990.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 448.358 bits (1152), Expect = 8.564e-148 Identity = 230/461 (49.89%), Postives = 315/461 (68.33%), Query Frame = 0
Query: 96 FRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPP-RAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLL-SKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLR 552
F + LS + RA+ E F T VQ+ T+P + G DV+A+AKTG+GKT+ F +P++E L + P R G +SVL++SPTRELA QIHVEA++LLTF + A + +GGTN+ ++KRL + D LVATPGRL+DHLEN GL +LRVL+LDEADQLL+MGFRP+IEKI+ +LP + RQTLLFSAT+P VK++A AM + +ID VG E TN QV Q + H A L ++ + A++ P HK++ FF TAR G E+ GI+ EIHSRKSQ+ RTK +DQFR +KS ++ SSDV+ARG+D+ +T V+Q+G+PS+RE YVHRLGRTGRAG+ G+G+L+L E + LR +KDLP+ + + P+ + + + RA+ VD + AY AW+GFYNS G + WSK LV AN++A+ ++GC P +L KTVGMMGLR
Sbjct: 3 FASMGLSKQSMRAITEVCKFTHATAVQDQTLPHITKGVDVLARAKTGSGKTVGFTLPSIELLMKNPETRKGDVSVLIVSPTRELASQIHVEANQLLTFHE-YGAQVVFGGTNIGTDKKRLRENRCDFLVATPGRLIDHLENEGLRERMSNLRVLVLDEADQLLEMGFRPSIEKILSYLPRN-RQTLLFSATVPDAVKQIAANAMSDNHVYIDCVGDEATATNSQVAQWLTVADTKDHLALLLQVIEAHAREVPNHKIMCFFPTARATGLASEVFEAMGIKVFEIHSRKSQSARTKAADQFRASKSAVMMSSDVTARGMDFPDVTFVIQIGLPSSREQYVHRLGRTGRAGKTGEGLLILADFEKYILRSMKDLPLQ-VAEASVDPNAS--DRINRALQKVDSKTKDQAYVAWMGFYNSSTGKIGWSKNDLVHAANSYAIDVLGCSGL-PGVLAKTVGMMGLR 457
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|545354653|ref|XP_005643160.1| (DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245121|gb|EIE18616.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 442.965 bits (1138), Expect = 6.551e-145 Identity = 231/487 (47.43%), Postives = 319/487 (65.50%), Query Frame = 0
Query: 77 PTLP-----SAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNG-LAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLP-SHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSG-ILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGL-KWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRG 553
PT+P + +++ LT+A F LS T R + E +G+ T VQ T+P L G DV+ KAKTGTGKTLAF IP +E++ + P G I++LV+SPTRELA QI EA K LT + L + +GGTN+N + L +R PD+LVATPGRLLDHL+N G L P +LR+L+LDEAD+LLDMGFR IEK++ LP + RQ +LFSAT P ++E+AG+A+RP Y+ +DTVG E+ V Q + ++ A+L ++ + +DP+ K++ FF TAR+ +YCEL GI +E+HSRKSQA RTK +DQFR +K G I+FSSDVSARGVDY ++ VVQ+G+P + YVHRLGRT RAG+ G+G+++L ES FL L DLP++ P+ + Q + EAV + +V + AY+ WLGFY + KW TRL++ AN +A+ +GC QPP + K+TVG MGL+G
Sbjct: 63 PTIPQFQQQANMSSTTKESLTEATFASFELSAATLRGITEVMGYTNCTKVQAETLPATLRGLDVVCKAKTGTGKTLAFLIPGIERMLEAPAGRGKIAMLVISPTRELAAQIAEEA-KQLTKHQNLAVQVMFGGTNMNRDITDLQRRVPDVLVATPGRLLDHLQNTGTLPPMLSNLRMLVLDEADRLLDMGFRQEIEKLVRMLPPKNGRQNMLFSATYPSNIRELAGIALRPEYQVVDTVGEEDTHAAETVQQQYIVTSMEDQNAHLLAVIRQHMSEDPSFKIMAFFVTARVTQFYCELFQAMGIPVLEMHSRKSQAQRTKAADQFRASKGGCIMFSSDVSARGVDYPDVSLVVQLGLPMEKAQYVHRLGRTARAGKSGKGLIILGDYESNFLNSLSDLPITAAPSPSPQVFAGAQEAVEAGLAAVAYASKAQAYRTWLGFYKGFCKMCKWDSTRLIQAANQYAVTLGCGAQPPPIEKRTVGKMGLKG 548
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|948271219|gb|ALM54993.1| (DEAD box RNA helicase CiRH25, partial [Chlamydomonas sp. ICE-L]) HSP 1 Score: 449.129 bits (1154), Expect = 2.004e-144 Identity = 237/477 (49.69%), Postives = 309/477 (64.78%), Query Frame = 0
Query: 86 SASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPS-HARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQ--HFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRI 559
+A +H +D F L +S T++A+AE G++ T VQ ++P L G DVMAKAKTGTGKT+AF IP +E+L P R G + +VLSPTRELA QI+ E KLL F A + GGTN+NAE K++ R PDILV TPGRLLDH+ +GL + QDLR+ + DEAD LLDMGFRP +EKI FLPS RQ LLFSAT P+ VK +A A+R Y+ +D VG E+ TN+QV Q A++P DQ H Y +++ +++P K+IVFF TAR E+ + +E+HSRKSQA RTK SD+FR + I+FSSDVSARGVDY ++ V+Q+G+PS++ YVHR+GRT RAG+ G +L+L E F R L DLPV +P + Q A+ + + V AY AWLGFYNS L SK LVE AN F+ I+GC + PP L +TVG MGL+G PGLR+
Sbjct: 276 TALDHQSDIKFASLNISPLTKKAMAEVFGYEFCTKVQAKSIPACLHGTDVMAKAKTGTGKTIAFMIPVIERLTTNPSRRGQVGAIVLSPTRELANQIYAECVKLLKFH-PFSAQVVVGGTNINAEGKKMSARTPDILVGTPGRLLDHMVTSGLKEHVQDLRLFVADEADSLLDMGFRPTLEKIFAFLPSREKRQALLFSATFPQDVKSLANYALRQPYEMVDCVG-EQTGTNVQVIQYKAVVPHDQLIHSMYC-SIMDHIREEPNFKIIVFFPTARGTQLCSEIFNAVKVPVLEMHSRKSQAHRTKMSDEFRNSSGVIMFSSDVSARGVDYPDVSMVLQVGLPSDKAQYVHRVGRTARAGKAGISLLLLADFEGIFTRKLIDLPVQDLPQYSPQDLAAAKALITTGLKKVSSDTKEKAYAAWLGFYNSAGTLSLSKPHLVELANDFSRILGCPE-PPELEARTVGKMGLKGTPGLRV 748
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|693498427|emb|CEF99023.1| (Helicase, C-terminal [Ostreococcus tauri]) HSP 1 Score: 442.195 bits (1136), Expect = 1.345e-143 Identity = 244/510 (47.84%), Postives = 336/510 (65.88%), Query Frame = 0
Query: 92 TDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQL-RQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAK-QDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYN-SVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPG-LRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGR 597
+ A F ++ L++ + RA+ + +GF T VQ+AT+P ++ G DV+A+AKTG+GKT+ F +PA+E+L R P+ G++S LV+SPTRELA QI EA LL+F K + +GGTN+N+ERKRL P + L+ATPGRL+DH E+ LA Q+L VL+LDEADQLLDMGFRP++EKI+ FLP+ RQTLLFSAT+PK V ++A A+RPG+++ID VG + TN+QV QS + P H + ++ + + ++ HK++VFFTTAR E G EIHSRKSQA RTK +D+FR +++ ++FSSDV+ARG+D+ +T V+Q+GVPSNRE Y+HRLGRTGRAG+ G+G+L+L P E FF+ ++DLP+ ++ + D + +AVR AI V+ AY AWLGFYN S ++WSK L+ AN +AL DQ P L+KKT+G MGLR LRI L G GG GGG GG RG
Sbjct: 100 STAAFANMGLTEASARAIRDVMGFTHATSVQDATLPHIMQGLDVLARAKTGSGKTVGFLLPAIERLARAGAPQRGNVSCLVISPTRELASQIGEEAKSLLSFHP-FKCQVVFGGTNINSERKRLKTEPVEFLIATPGRLIDHFESGDLARACQNLDVLVLDEADQLLDMGFRPSLEKILSFLPNQ-RQTLLFSATVPKTVHQIAANALRPGHQYIDCVGEDAPATNLQVKQSLIMAPFHDHLTLMTQVIERHQAEEQNHKIMVFFTTARSTQLASETFEAMGKPVFEIHSRKSQAVRTKAADKFRASRAAVMFSSDVTARGMDFPDVTMVIQIGVPSNREQYIHRLGRTGRAGKTGKGLLMLDPAEKFFMNGVRDLPIEVLDSSV---DPQTDQAVRLAIRKVNPDTKSQAYSAWLGFYNGSSSKMRWSKEDLIFAANNYALETLQCDQLPGLMKKTIGKMGLRDYASHLRIVSELERGGGGGGGGGGGGGGGGSGGRGGGGRGGGGRGG 604
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|303275900|ref|XP_003057244.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461596|gb|EEH58889.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 454.136 bits (1167), Expect = 1.092e-142 Identity = 240/482 (49.79%), Postives = 322/482 (66.80%), Query Frame = 0
Query: 88 SNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQL-RQRP-PRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLP 564
+N + F L LS + RA++E + F T VQ+ T+P ++ G D +A+AKTG+GKT+AF +P +E L R P P GS+S LVLSPTRELA QIH E+ LL F K+ + +GGTN+N+ER R+ D LVATPGRL+DH E +GL P +L+VL+LDEADQLL+MGF+PA+++I+ F+P RQTLLFSAT+P+ V+ +A A+RPGY ++D VG E+ TN+QV Q I PLD H L L++ +Q+P HKV+ FF TAR EL G EIHSRKSQ RTK +DQFR +K ++ SSDV+ARG+D+ +T V+Q+G+PS++E Y+HRLGRT RAG+ G+G+L+L P E FF R L+DLP++ P D AV A+ VD R AY AW+GFYN G + W K +LV+EAN +AL ++GC P +LKKT GMMGL+GVPGL + LP
Sbjct: 90 NNGASTTSFAALGLSAPSLRAISEVMKFTHATSVQDQTLPPIMKGLDTLARAKTGSGKTVAFLLPTIELLHRTGPAPGNGSVSCLVLSPTRELASQIHEESKSLLAFHN-FKSHVVFGGTNINSERGRMNGGRCDFLVATPGRLIDHFETSGLQPRCANLKVLVLDEADQLLEMGFKPAVDRILSFIPRE-RQTLLFSATVPQQVRNIAANALRPGYAYVDCVGEEDSATNLQVKQWLTIAPLDDHLILLVQLINMHQQQEPNHKVMCFFPTARSTQLAAELFEALGKPVTEIHSRKSQGHRTKAADQFRASKCAVMMSSDVTARGMDFPDVTLVIQVGLPSSKEQYIHRLGRTARAGKTGEGLLLLAPHEEFFARQLRDLPITPAPATV---DGNIASAVANALARVDIRTKEQAYVAWMGFYNGSCGKMGWGKPQLVQEANRYALEVLGCPGI-PGILKKTAGMMGLKGVPGLNLVTDLP 565 The following BLAST results are available for this feature:
BLAST of EWM23940.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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