EWM23940.1, cds6736 (CDS) Nannochloropsis gaditana

Overview
NameEWM23940.1
Unique Namecds6736
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:422782..424851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23940.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100082g22.9372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:422782..424851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|585105225|gb|EWM23940.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 1406.73 bits (3640), Expect = 0.000e+0
Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0
Query:    1 MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR 689
            MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR
Sbjct:    1 MLVRRAVFRLTNQHPCRRAVLLSVLLPAVLMTSRGNAFVQPSPHRGKHSSKHHHQRIVDQQHQYQQLQQQRDQHTHPTLPSAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGRDTHGGGRVGEPSQKRPPHANGQSPGQAQSYNFPKPDVRMGSEGAGRGDGISGKGGLGREKPYRDRGGRGSTPTGGGSGRGGGRKGGGYDGSR 689          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|255089893|ref|XP_002506868.1| (predicted protein [Micromonas commoda] >gi|226522141|gb|ACO68126.1| predicted protein [Micromonas commoda])

HSP 1 Score: 478.404 bits (1230), Expect = 1.028e-159
Identity = 254/463 (54.86%), Postives = 324/463 (69.98%), Query Frame = 0
Query:  107 RALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPP-RAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAK-QDPA-HKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLP 564
            RA+ E  G+   T VQ+ T+P +L G DV+A+AKTG+GKT+AF +P++E L + P  RAG +SVLVLSPTRELA QIH E+ KLL F  ALK+ + +GGTN+ +ER R+  +  D LVATPGRL+DH E +GL P  Q+L+VL+LDEADQLL+MGF+P+I+KI+GF+P   RQTLLFSAT+P  VK++A  A+RPGY ++D VG E+  TN QVTQ   + PLD H   L  L++  + Q+P  HKVI FF TAR      EL    G    EIHSRKSQ  RTK +D FR AK G++ SSDVSARG+DY  +T VVQ+G+PS+RE Y+HRLGRT RAG+ G+G+L+L P E FF R LKDLP++  P  +  PD   L AV  A+  VD R    AY AWLGFYNS  G + W K RLV+E N +AL ++ C    P +LKKTVGMMGL+GVPGL +   LP
Sbjct:    2 RAIDEVFGYTHATAVQDQTLPPILKGLDVLARAKTGSGKTIAFLVPSIETLLRSPAGRAGDVSVLVLSPTRELASQIHEESLKLLKFH-ALKSQVVFGGTNIKSERSRMNSQRCDFLVATPGRLIDHFETSGLQPRCQNLKVLVLDEADQLLEMGFKPSIDKILGFIPRQ-RQTLLFSATVPNQVKQIAANALRPGYAYVDCVGEEDSATNTQVTQWLTMAPLDDHLPLLVQLVNMHQAQNPVEHKVICFFPTARATQLAAELFQALGKPVTEIHSRKSQGHRTKAADAFREAKCGVMMSSDVSARGLDYPDVTLVVQVGLPSSREQYIHRLGRTARAGKTGEGLLLLAPHEEFFTRQLKDLPITPAPA-SVDPD--VLNAVNNALRRVDVRTKEQAYVAWLGFYNSSTGKMGWDKKRLVDEGNRYALEVLQCPGL-PGILKKTVGMMGLKGVPGLNLVSELP 458          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|552812654|ref|XP_005843752.1| (hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis] >gi|307103390|gb|EFN51650.1| hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis])

HSP 1 Score: 473.781 bits (1218), Expect = 2.394e-156
Identity = 259/498 (52.01%), Postives = 328/498 (65.86%), Query Frame = 0
Query:   85 TSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGS-ISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQ------------------VTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGS 562
            T  ++HLT   F  LPL+  +QR+L E L F+ +T VQEAT+P VL G DVMA+AKTGTGKT+AF IPA+E L + PPR+GS ISVLVLSPTRELA QI  EA  LL F    KA + YGGTN+N+ER RL  R  D+LVATPGRL+DHLEN+GLA   Q +R L+LDEADQLL+MGFRPAIEKI+ FLP  +RQTLLFSATMP+ V++VAGLA++  + FIDT+G E+  TN Q                  V QS A++P++  F  + ++L + A+  P HK+I                                + R K S +FR A S ILFSSDVSARGVDY  +T V+Q+G+PS+RE Y+HRLGRT RAGR G G+L+L P+E  F+R L+DLP++  P     P   +  AV+  +  V +R    AY AWLGFYNS  G+ WSK  LV++AN F+ +MG   QPP L KKT+GMMGL+GVPGLRI+ S
Sbjct:   60 TGPTSHLTTTSFASLPLAAASQRSLTEVLRFEFLTSVQEATLPAVLNGGDVMARAKTGTGKTMAFLIPAVEALCRAPPRSGSGISVLVLSPTRELASQIAKEAEALLRFHP-YKAQVVYGGTNINSERNRLAGRC-DVLVATPGRLIDHLENSGLAATLQGIRTLVLDEADQLLEMGFRPAIEKILSFLPK-SRQTLLFSATMPQAVQQVAGLALKKQHAFIDTIGEEDSATNTQARLPAAPREAPRPLHSPRVEQSYALVPMEDQFTAIFSVLRRHAQTTPDHKII--------------------------------SARDKASKEFRTATSAILFSSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGVGLLILMPEEQHFMRQLRDLPLTAEPGVPTTPQDVA--AVKAGLARVGDRLPDMAYAAWLGFYNSAKGMGWSKPELVQQANRFSAVMGL-SQPPPLQKKTIGMMGLKGVPGLRIDDS 519          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|971514611|dbj|GAQ83598.1| (DEAD-box RNA helicase family protein [Klebsormidium nitens])

HSP 1 Score: 471.47 bits (1212), Expect = 1.936e-153
Identity = 248/477 (51.99%), Postives = 333/477 (69.81%), Query Frame = 0
Query:   91 LTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGS---ISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPY-FQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPL-DQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASL-EAVRRAIPSVDERAVGAAYQAWLGFYNS-VPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIE 560
            +T+  F    LS  T +AL E LG+++MT VQEAT+P  L G DV+AKAKTGTGKTL F IPA+E++  R  R  S   I VLV+SPTRELAQQI  EA  LL +   L++++ +GG+N+N++R+RL  +P +IL+ TPGRL DHL+N    P   + L+VLILDEAD LL+MGFRPAIEKI+ +LP   RQTLLFSAT+P  V  V+ LA++P + FIDTVG E + TNIQV QS A++PL DQ  A  H L    +++   KV+VF TTAR    Y +L    G  A+EIHSRKSQA RT+TS++FR     +LF+SDVSARGVDY  ++ V+Q+G+P+++  Y+HRLGRT RAG++G+GIL+L P E +FL+ + DLP+         P +A + + V+R +  ++E+ +  AY AWLGFYN+    L WSK  LV++AN +A       +PPALL++TVGMMGL+GVPGLRIE
Sbjct:  269 ITETRFDSFNLSPPTIKALHEDLGYEKMTVVQEATLPACLDGKDVLAKAKTGTGKTLGFLIPAIERILARGGRRSSNPDIEVLVISPTRELAQQIEAEAKALLKYH-PLRSEIIFGGSNINSDRRRLESQPAEILICTPGRLQDHLDNTPSVPQRLKGLKVLILDEADNLLNMGFRPAIEKILRYLPGQ-RQTLLFSATIPPQVHTVSKLALKPNHAFIDTVGEETEQTNIQVKQSYAVIPLADQIGATFHILRQHIREERNFKVLVFLTTARATQLYAQLFQGIGFPALEIHSRKSQAARTRTSEEFRKGSRVVLFTSDVSARGVDYPDVSMVLQVGLPTDKAQYIHRLGRTARAGKEGEGILMLAPYEKYFLKQVADLPLEQY---GPVPIEADIRQEVQRGMSRLEEKTLVQAYVAWLGFYNTFCKNLGWSKADLVQQANFYATECLGMSEPPALLRRTVGMMGLKGVPGLRIE 740          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|168051595|ref|XP_001778239.1| (predicted protein [Physcomitrella patens] >gi|162670336|gb|EDQ56906.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 454.136 bits (1167), Expect = 2.191e-150
Identity = 239/471 (50.74%), Postives = 323/471 (68.58%), Query Frame = 0
Query:   96 FRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQ-LRQ--RPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENN-GLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSG-ILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEA-VRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRI 559
            F +  +S  + +AL E  GFD MT VQ  T+P++L G DV+A+AKTGTGKT+AF +PA+E  LR+  R  +  SI+VL + PTRELA Q+  EA  L TF + L   +  GGTN+  E  RL + P  ILV TPGRLLDH++++  +    +DL+VLILDEADQLLDMGFR ++  II  LP+  RQTLLFSAT+P  VK +  +A++ GY +IDTVG +  +T+++V Q   ++PL++  + L+ LL + A +DP  KV+VF T+A+    + E   K G+  +EIHSRKSQ+ RTK S++FR    G I+F+SDVSARGVDY  +T VVQ+G P++RE Y+HRLGRTGRAG++G+G+L+LTP E  FLR L D+ ++        PD   +EA V +A+  +DE     AYQAWLG+YNS   LKW K  LV+ AN F+  +G + QPPALLKKTVGMMGLR VPGL +
Sbjct:   14 FDNFKISPLSLKALHEVAGFDTMTVVQNETLPVILKGTDVLARAKTGTGKTVAFLLPAIESILREGSRKVKRNSINVLAICPTRELATQVAAEAKMLTTFHRDLGVQVVIGGTNMATESARLQRSPCQILVGTPGRLLDHIQSDRAVRSQLEDLKVLILDEADQLLDMGFRKSLNGIIKALPTE-RQTLLFSATVPNEVKSMCEIALKKGYTYIDTVGEDNVETHMKVQQEYLLVPLEKQLSILYALLKEHAVEDPDFKVLVFCTSAKCTALFAEFYKKLGMNTLEIHSRKSQSFRTKASNEFRNHPGGVIMFTSDVSARGVDYPDVTFVVQVGTPASREQYIHRLGRTGRAGKEGRGLLLLTPWEEVFLRSLNDITITQSKGTEVSPD---IEAKVNKALGYIDEDTKSKAYQAWLGYYNSCRLLKWDKQTLVKRANLFSSTLGLR-QPPALLKKTVGMMGLRNVPGLTV 479          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|612389873|ref|XP_007510457.1| (predicted protein [Bathycoccus prasinos] >gi|412990618|emb|CCO17990.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 448.358 bits (1152), Expect = 8.564e-148
Identity = 230/461 (49.89%), Postives = 315/461 (68.33%), Query Frame = 0
Query:   96 FRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPP-RAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLL-SKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLR 552
            F  + LS  + RA+ E   F   T VQ+ T+P +  G DV+A+AKTG+GKT+ F +P++E L + P  R G +SVL++SPTRELA QIHVEA++LLTF +   A + +GGTN+  ++KRL +   D LVATPGRL+DHLEN GL     +LRVL+LDEADQLL+MGFRP+IEKI+ +LP + RQTLLFSAT+P  VK++A  AM   + +ID VG E   TN QV Q   +     H A L  ++ + A++ P HK++ FF TAR  G   E+    GI+  EIHSRKSQ+ RTK +DQFR +KS ++ SSDV+ARG+D+  +T V+Q+G+PS+RE YVHRLGRTGRAG+ G+G+L+L   E + LR +KDLP+  +   +  P+ +  + + RA+  VD +    AY AW+GFYNS  G + WSK  LV  AN++A+ ++GC    P +L KTVGMMGLR
Sbjct:    3 FASMGLSKQSMRAITEVCKFTHATAVQDQTLPHITKGVDVLARAKTGSGKTVGFTLPSIELLMKNPETRKGDVSVLIVSPTRELASQIHVEANQLLTFHE-YGAQVVFGGTNIGTDKKRLRENRCDFLVATPGRLIDHLENEGLRERMSNLRVLVLDEADQLLEMGFRPSIEKILSYLPRN-RQTLLFSATVPDAVKQIAANAMSDNHVYIDCVGDEATATNSQVAQWLTVADTKDHLALLLQVIEAHAREVPNHKIMCFFPTARATGLASEVFEAMGIKVFEIHSRKSQSARTKAADQFRASKSAVMMSSDVTARGMDFPDVTFVIQIGLPSSREQYVHRLGRTGRAGKTGEGLLILADFEKYILRSMKDLPLQ-VAEASVDPNAS--DRINRALQKVDSKTKDQAYVAWMGFYNSSTGKIGWSKNDLVHAANSYAIDVLGCSGL-PGVLAKTVGMMGLR 457          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|545354653|ref|XP_005643160.1| (DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169] >gi|384245121|gb|EIE18616.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 442.965 bits (1138), Expect = 6.551e-145
Identity = 231/487 (47.43%), Postives = 319/487 (65.50%), Query Frame = 0
Query:   77 PTLP-----SAPATSASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNG-LAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLP-SHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSG-ILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGL-KWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRG 553
            PT+P     +  +++    LT+A F    LS  T R + E +G+   T VQ  T+P  L G DV+ KAKTGTGKTLAF IP +E++ + P   G I++LV+SPTRELA QI  EA K LT  + L   + +GGTN+N +   L +R PD+LVATPGRLLDHL+N G L P   +LR+L+LDEAD+LLDMGFR  IEK++  LP  + RQ +LFSAT P  ++E+AG+A+RP Y+ +DTVG E+      V Q   +  ++   A+L  ++ +   +DP+ K++ FF TAR+  +YCEL    GI  +E+HSRKSQA RTK +DQFR +K G I+FSSDVSARGVDY  ++ VVQ+G+P  +  YVHRLGRT RAG+ G+G+++L   ES FL  L DLP++  P+ + Q    + EAV   + +V   +   AY+ WLGFY     + KW  TRL++ AN +A+ +GC  QPP + K+TVG MGL+G
Sbjct:   63 PTIPQFQQQANMSSTTKESLTEATFASFELSAATLRGITEVMGYTNCTKVQAETLPATLRGLDVVCKAKTGTGKTLAFLIPGIERMLEAPAGRGKIAMLVISPTRELAAQIAEEA-KQLTKHQNLAVQVMFGGTNMNRDITDLQRRVPDVLVATPGRLLDHLQNTGTLPPMLSNLRMLVLDEADRLLDMGFRQEIEKLVRMLPPKNGRQNMLFSATYPSNIRELAGIALRPEYQVVDTVGEEDTHAAETVQQQYIVTSMEDQNAHLLAVIRQHMSEDPSFKIMAFFVTARVTQFYCELFQAMGIPVLEMHSRKSQAQRTKAADQFRASKGGCIMFSSDVSARGVDYPDVSLVVQLGLPMEKAQYVHRLGRTARAGKSGKGLIILGDYESNFLNSLSDLPITAAPSPSPQVFAGAQEAVEAGLAAVAYASKAQAYRTWLGFYKGFCKMCKWDSTRLIQAANQYAVTLGCGAQPPPIEKRTVGKMGLKG 548          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|948271219|gb|ALM54993.1| (DEAD box RNA helicase CiRH25, partial [Chlamydomonas sp. ICE-L])

HSP 1 Score: 449.129 bits (1154), Expect = 2.004e-144
Identity = 237/477 (49.69%), Postives = 309/477 (64.78%), Query Frame = 0
Query:   86 SASNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPS-HARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQ--HFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRI 559
            +A +H +D  F  L +S  T++A+AE  G++  T VQ  ++P  L G DVMAKAKTGTGKT+AF IP +E+L   P R G +  +VLSPTRELA QI+ E  KLL F     A +  GGTN+NAE K++  R PDILV TPGRLLDH+  +GL  + QDLR+ + DEAD LLDMGFRP +EKI  FLPS   RQ LLFSAT P+ VK +A  A+R  Y+ +D VG E+  TN+QV Q  A++P DQ  H  Y  +++   +++P  K+IVFF TAR      E+     +  +E+HSRKSQA RTK SD+FR +   I+FSSDVSARGVDY  ++ V+Q+G+PS++  YVHR+GRT RAG+ G  +L+L   E  F R L DLPV  +P  + Q   A+   +   +  V       AY AWLGFYNS   L  SK  LVE AN F+ I+GC + PP L  +TVG MGL+G PGLR+
Sbjct:  276 TALDHQSDIKFASLNISPLTKKAMAEVFGYEFCTKVQAKSIPACLHGTDVMAKAKTGTGKTIAFMIPVIERLTTNPSRRGQVGAIVLSPTRELANQIYAECVKLLKFH-PFSAQVVVGGTNINAEGKKMSARTPDILVGTPGRLLDHMVTSGLKEHVQDLRLFVADEADSLLDMGFRPTLEKIFAFLPSREKRQALLFSATFPQDVKSLANYALRQPYEMVDCVG-EQTGTNVQVIQYKAVVPHDQLIHSMYC-SIMDHIREEPNFKIIVFFPTARGTQLCSEIFNAVKVPVLEMHSRKSQAHRTKMSDEFRNSSGVIMFSSDVSARGVDYPDVSMVLQVGLPSDKAQYVHRVGRTARAGKAGISLLLLADFEGIFTRKLIDLPVQDLPQYSPQDLAAAKALITTGLKKVSSDTKEKAYAAWLGFYNSAGTLSLSKPHLVELANDFSRILGCPE-PPELEARTVGKMGLKGTPGLRV 748          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|693498427|emb|CEF99023.1| (Helicase, C-terminal [Ostreococcus tauri])

HSP 1 Score: 442.195 bits (1136), Expect = 1.345e-143
Identity = 244/510 (47.84%), Postives = 336/510 (65.88%), Query Frame = 0
Query:   92 TDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQL-RQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAK-QDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYN-SVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPG-LRIEGSLPGASGRNGGHAGGGNNVRKRTPSVSSDAGGRRGR 597
            + A F ++ L++ + RA+ + +GF   T VQ+AT+P ++ G DV+A+AKTG+GKT+ F +PA+E+L R   P+ G++S LV+SPTRELA QI  EA  LL+F    K  + +GGTN+N+ERKRL   P + L+ATPGRL+DH E+  LA   Q+L VL+LDEADQLLDMGFRP++EKI+ FLP+  RQTLLFSAT+PK V ++A  A+RPG+++ID VG +   TN+QV QS  + P   H   +  ++ + + ++  HK++VFFTTAR      E     G    EIHSRKSQA RTK +D+FR +++ ++FSSDV+ARG+D+  +T V+Q+GVPSNRE Y+HRLGRTGRAG+ G+G+L+L P E FF+  ++DLP+ ++ +     D  + +AVR AI  V+      AY AWLGFYN S   ++WSK  L+  AN +AL     DQ P L+KKT+G MGLR     LRI   L    G  GG  GGG              GG RG 
Sbjct:  100 STAAFANMGLTEASARAIRDVMGFTHATSVQDATLPHIMQGLDVLARAKTGSGKTVGFLLPAIERLARAGAPQRGNVSCLVISPTRELASQIGEEAKSLLSFHP-FKCQVVFGGTNINSERKRLKTEPVEFLIATPGRLIDHFESGDLARACQNLDVLVLDEADQLLDMGFRPSLEKILSFLPNQ-RQTLLFSATVPKTVHQIAANALRPGHQYIDCVGEDAPATNLQVKQSLIMAPFHDHLTLMTQVIERHQAEEQNHKIMVFFTTARSTQLASETFEAMGKPVFEIHSRKSQAVRTKAADKFRASRAAVMFSSDVTARGMDFPDVTMVIQIGVPSNREQYIHRLGRTGRAGKTGKGLLMLDPAEKFFMNGVRDLPIEVLDSSV---DPQTDQAVRLAIRKVNPDTKSQAYSAWLGFYNGSSSKMRWSKEDLIFAANNYALETLQCDQLPGLMKKTIGKMGLRDYASHLRIVSELERGGGGGGGGGGGGGGGGSGGRGGGGRGGGGRGG 604          
BLAST of EWM23940.1 vs. NCBI_GenBank
Match: gi|303275900|ref|XP_003057244.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226461596|gb|EEH58889.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 454.136 bits (1167), Expect = 1.092e-142
Identity = 240/482 (49.79%), Postives = 322/482 (66.80%), Query Frame = 0
Query:   88 SNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQL-RQRP-PRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSK-AKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPG-LKWSKTRLVEEANAFAL-IMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLP 564
            +N  +   F  L LS  + RA++E + F   T VQ+ T+P ++ G D +A+AKTG+GKT+AF +P +E L R  P P  GS+S LVLSPTRELA QIH E+  LL F    K+ + +GGTN+N+ER R+     D LVATPGRL+DH E +GL P   +L+VL+LDEADQLL+MGF+PA+++I+ F+P   RQTLLFSAT+P+ V+ +A  A+RPGY ++D VG E+  TN+QV Q   I PLD H   L  L++   +Q+P HKV+ FF TAR      EL    G    EIHSRKSQ  RTK +DQFR +K  ++ SSDV+ARG+D+  +T V+Q+G+PS++E Y+HRLGRT RAG+ G+G+L+L P E FF R L+DLP++  P      D     AV  A+  VD R    AY AW+GFYN   G + W K +LV+EAN +AL ++GC    P +LKKT GMMGL+GVPGL +   LP
Sbjct:   90 NNGASTTSFAALGLSAPSLRAISEVMKFTHATSVQDQTLPPIMKGLDTLARAKTGSGKTVAFLLPTIELLHRTGPAPGNGSVSCLVLSPTRELASQIHEESKSLLAFHN-FKSHVVFGGTNINSERGRMNGGRCDFLVATPGRLIDHFETSGLQPRCANLKVLVLDEADQLLEMGFKPAVDRILSFIPRE-RQTLLFSATVPQQVRNIAANALRPGYAYVDCVGEEDSATNLQVKQWLTIAPLDDHLILLVQLINMHQQQEPNHKVMCFFPTARSTQLAAELFEALGKPVTEIHSRKSQGHRTKAADQFRASKCAVMMSSDVTARGMDFPDVTLVIQVGLPSSKEQYIHRLGRTARAGKTGEGLLLLAPHEEFFARQLRDLPITPAPATV---DGNIASAVANALARVDIRTKEQAYVAWMGFYNGSCGKMGWGKPQLVQEANRYALEVLGCPGI-PGILKKTAGMMGLKGVPGLNLVTDLP 565          
The following BLAST results are available for this feature:
BLAST of EWM23940.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105225|gb|EWM23940.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|255089893|ref|XP_002506868.1|1.028e-15954.86predicted protein [Micromonas commoda] >gi|2265221... [more]
gi|552812654|ref|XP_005843752.1|2.394e-15652.01hypothetical protein CHLNCDRAFT_59143 [Chlorella v... [more]
gi|971514611|dbj|GAQ83598.1|1.936e-15351.99DEAD-box RNA helicase family protein [Klebsormidiu... [more]
gi|168051595|ref|XP_001778239.1|2.191e-15050.74predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|612389873|ref|XP_007510457.1|8.564e-14849.89predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|545354653|ref|XP_005643160.1|6.551e-14547.43DEAD-domain-containing protein [Coccomyxa subellip... [more]
gi|948271219|gb|ALM54993.1|2.004e-14449.69DEAD box RNA helicase CiRH25, partial [Chlamydomon... [more]
gi|693498427|emb|CEF99023.1|1.345e-14347.84Helicase, C-terminal [Ostreococcus tauri][more]
gi|303275900|ref|XP_003057244.1|1.092e-14249.79predicted protein [Micromonas pusilla CCMP1545] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6752rna6752Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications