rna6623, rna6623 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6623
Unique Name	rna6623
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2320
Alignment location	CM002469.1:103863..106392 -

Link to JBrowse

Properties


Property Name	Value
Product	CCAAT-binding factor
Orig transcript id	gnl\|cribi\|Naga_100063g12.3895.mrna
Orig protein id	gnl\|cribi\|Naga_100063g12.3895
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:103863..106392 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100063g12	gene6402	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24070.1	cds6607	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6623	rna6623-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:103863..106392-
coding sequence from alignment at CM002469.1:103863..106392-

mRNA sequence

>rna6623 ID=rna6623|Name=rna6623|organism=Nannochloropsis gaditana|type=mRNA|length=2320bp
GAATATTAATGTTTCAACATATTATGATTGGAATCAATGTGCTTGCCTTT
GTAAACTTGGGAGCACGACAATGTGATCTTATCACGGCTTACGACAACTA
AAGAATTTAGGAAGTCAAGAGACATATGTAGAATGCTTTATTGCACCCCG
CTTACACGACGACACCTATTATAACAGCATACTTGACGCTGACTTCATAT
GGAGAAAAATCCGCCTAGAAGAATGGCAGTTTTGCGAAGATTGGGCTGGG
CCGCTGGACTAGTTATAGCTCTGAATGACGTGCCGTCTGTCCGAGCTCTA
AGTGGCATGGGCGGAAGCGCGGCTCTTGGAATGGCTATTTCTGCCGCCGG
AGACAAAATAAGTCTACGAAAAGCAGCAGGTTTAGATAAAATTGACGTGT
CATCTGTCGTGGAGACACCGGACTCTCCCTACGCAACTTTTAATGAAGTG
ATGCAAATGTCCTCTTTCGTTGCTGCCTTGGAATCATTAACAGCGAATGA
AGAACTCAAAAAGCAGGCAGAAGCCTATTTATCCGCATCAGAGTATGCAG
CATACGTCGACCTGGCACGCCATCTCTCAAAATGCTACGGATCGCTGTCG
CCTGCCGGAGGCCCTTTGGCTGATACTTGGACCTCGGGTGTGAGAAGCAC
TACTCAGGGACAGGCCGCCGTTTTAGCGGTGGATGGTTCAGTTAATAAAC
TGTCAACCACACCTGTTCGAAAGCAGCAAGCCATGAAAGCTGCGTTGGGC
CTGTATGACACTTGGATCAAAACGGGTTCTCCCTCCCGGCGTCTGAAAAG
AATTTCGCCACGACATCACCGGGCACAACAAGGTTTGAGCGACGGAGGCT
GGAGCCAGCTACCCGCCCCTTTGACAGGAGCTTATGATGCTCTTAAAGGA
TATGGTACAGTAGAATGCCGTACCGCCTACCAGCGGATGAGCGAGATGTA
CAATTCTGGGGAAATAGGAGGAAACAATGGCGGGTTGAACAACATCCCAG
GCACCGGGGGTAATGGGGGAGGGCTTCCAGGATCTGGAGGGAGCATGCCG
GGGTCTGGGGGTGGAATGCCTGGCAGTGGAAGTCAAGGAGGCTTCCCCAA
TGCGGGAAGCTTGCCCGGCAACCCCTTTGGGACGTCCATGAGCGGGAAGG
AGCCAGGGGCGGAGGGACCCCCAAACCCCTTCGATAACCCTGACGTGGTG
ACCGATCCCGAGGAAAATCCTTTGGACGGGGCTACCACCACCGAGGGCAA
GGATCAAGAAGTCCCAATGCCCACTTCCAAACCGACCGCCACCCTGGCCG
AGGTGGGCACAAATAAGTGCGAGGTGTTGGAGAATGGGGCGGTGAGCGTG
CAGCTTTGCCAAGGGTCTACGGTCACTGCGTCCTCCGCCACCATTACGGG
CTCGATCATCAACGTCGGCAACCAGACATTATGCGGACTCAAGCTTATTG
TCGACAATTTTGAGCTCGCGTCTTCGTTCTATCCGCCATGGCTGCCCTCC
TACGCGGGCGAATTCCAAGCCGGAAATACCATCACCTTCGGGATAACTGT
GCCTTATACAAGTGGAGCCCCCAGGCCAGAGGCAGACATTGACCAGTCCA
TCGCAGCATGTGTGGCACTGACCATGCCGCCCACTGATGCCCCCACCTTG
GTTACTGCCTCCCCCACCCGAAGTCCTACGGCCAGACCAGCTCCGACGGA
GCCTCCCGGACCAGTCTTTGACTTGCTTGCTCTGGACGGGCAGGACACCA
AGTGCCTGAAAGGCTGCTCCAACATCGTACATGGACTCACATCCTGCGAA
GCATTCGACGCCATATTTGCTTTCCGTTGCGACGTTTGCGACAAGGACAC
GCAGGCCCAGGTGAAGGAAATCTGCCGGAGCACGTTCGAGTGTGGAAACG
CCATGTGTCATTTGGTTGGAACCGAGCAGCAGCACTTGAGCTCGGGGGCT
GGACGGCTGCGAGGGGACTTGGGCTCTGTGAAGACATCTTTGTCCCTGAT
GCTGGGGCTTGCGATGATCTTGATGATGCTGAATATGCATGACGGATGAG
CGTGCTGAACCGCGGGGAGGATCATCGAGTCAGTGCGCAGCAAGGAAAGC
GCAGGATGATGGCTTTCCCAGTGAGTATCGATTCGACCTGCGACCAGTTC
AAAGAGTGCGTGTGTTGAAGTACGGGGAGAATCCTTGTCATTATTTCGAG
TTATGCGTGCTTTGGCTGCGAATGTATCTGTGCATGTGCCTTCGACGACC
AAGACAGGGTTGCGAGGAAAAAAGAACATCCTTAATCACACGGAAAGAAA
ATGTCGGAAAATATTACTGG

protein sequence of rna6623

>rna6623-protein ID=rna6623-protein|Name=rna6623|organism=Nannochloropsis gaditana|type=polypeptide|length=787bp
MRSSKIRKVAEVEVAFPLSSPPPSSASASGTPSSILTTIRDIERGILDGQ
DLQHLNGLTLLLVHVRALLQSMIGALEEESGAEKVLNNKDREVAGLQSMH
ALRRIFTALVNRGDVRKPITKDSTTASSPVNAITPDTSLAKTSGALGKGE
VLSGASRAQGRKRAGHVEIQEHQNETHAVNAEESLRIFRQWAYRQYATFL
SLLLDLVEGKAHDIAHHSSSSSSSSSLTSIKPAFSIKVRIRAAALRTIME
MVKVESVVLHKNYRSFGHELFYRLLMGLLSSSTNSISSRHSHKYGNSDKE
EESRKVVDARDLADLLEVLRVDYIEPYCDVRYWLLKGLGIWARKELKEGR
CRTSTEQEEASRTETALKLLMMVRLSEEESAMRLLWVSLQDEKGDGALLP
NQGGKEEEEEEEETGWDWSGDEGMGHEEDEEALGKDGARERVPNVASLSA
HRKALEAAWLGCLRLPDLPPALYRSITQHVARHVLEHLPRPLLLADFFTA
AYAQGGLTAVIALEGLFVLMQAHNLEYPSFYCSLYRLLSPGPQVLYSRHR
ARFFRLLRLCLISTLVPAHVVAAFLKRLGRLSLRAPAPSVIFFLSLLTVV
LRAHPSCLALLHRSRALKGIDEAQAVDRFDPGVEDPAAAFQMTEFAAGKH
EGEDQDGNNDAQMGGIQTSLWEVAALQMHYHHAVASLAKGLEITTPEDPK
KPLSMNMEAMASYTYTELFTLEGKYWKRGKKEEMAGRKRRRKGLEGGQEE
GVALAHERKPRSGKLFQAGDVFDGLFVLPSLSAVRKE

mRNA from alignment at CM002469.1:103863..106392-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6623 ID=rna6623|Name=rna6623|organism=Nannochloropsis gaditana|type=mRNA|length=2530bp|location=Sequence derived from alignment at CM002469.1:103863..106392- (Nannochloropsis gaditana)
ACAGGTGCTGGTTCCATAACTGGTCCCCAAAATGCTGTGACACGACCCCG
AGACCTTCATAATCATACACTTCATGTAAATAGACAGGACATGCGGTCTT
CCAAAATACGCAAGGTAGCAGAGGTTGAGGTTGCATTCCCTCTTTCATCT
CCTCCTCCTTCATCCGCCTCTGCCTCCGGTACACCAAGCAGTATCTTGAC
AACCATACGTGACATTGAGCGCGGCATACTGGATGGACAGGACCTGCAGC
ACTTAAATGGACTTACATTACTTCTTGTACATGTCCGGGCCTTACTTCAA
TCCATGATTGGAGCGCTGGAGGAGGAGAGTGGTGCAGAAAAAGTGCTGAA
CAACAAGGACAGGGAGGTTGCCGGCTTACAGTCTATGCATGCTTTGCGGC
GCATCTTCACGGCGTTAGTCAATCGGGGAGACGTGCGAAAACCAATAACC
AAAGATTCCACTACTGCTTCCAGTCCTGTAAATGCCATTACCCCGGATAC
GTCCCTCGCAAAAACTTCGGGTGCTCTGGGGAAGGGCGAAGTTTTGTCTG
GCGCAAGTAGAGCGCAAGGTCGCAAGCGTGCAGGCCACGTGGAAATTCAG
GAGCATCAGAATGAGACTCATGCCGTAAATGCAGAGGAATCGCTGCGTAT
ATTTCGCCAATGGGCGTACCGCCAGTACGCCACTTTCCTTTCTCTTCTAC
TCGACCTAGTGGAGGGCAAAGCTCACGACATAGCCCACCACTCTTCCTCC
TCATCCTCTTCCTCTTCTTTAACATCCATAAAACCTGCTTTCTCTATTAA
GGTGCGCATTCGCGCCGCAGCCCTTCGCACCATCATGGAGATGGTGAAAG
TGGAAAGCGTGGTTTTGCACAAGAACTACCGTTCCTTCGGGCACGAGCTG
TTCTACCGGCTTCTTATGGGACTACTCAGCAGCAGTACCAACAGTATCAG
CTCCCGCCACAGCCATAAGTATGGCAACTCTGACAAAGAGGAGGAATCTA
GAAAAGTAGTCGATGCGCGGGACCTGGCGGACCTGCTGGAGGTTCTCCGT
GTTGACTACATAGAGCCCTACTGTGACGTTCGCTATTGGCTCCTAAAAGG
GCTGGGAATCTGGGCGAGAAAGGAGCTGAAAGAGGGACGATGTAGGACAT
CCACGGAACAAGAAGAGGCATCAAGGACGGAGACGGCATTGAAGCTGTTG
ATGATGGTGCGATTGAGCGAGGAGGAATCGGCGATGCGCTTACTCTGGGT
GTCGCTTCAGGATGAAAAGGGGGATGGGGCATTGCTGCCGAACCAGGGAG
GGAAGGAGGAAGAGGAAGAGGAGGAAGAGACCGGGTGGGATTGGTCGGGA
GACGAGGGGATGGGCCATGAGGAGGACGAGGAGGCACTCGGGAAAGACGG
CGCCAGGGAGCGCGTTCCCAACGTGGCGAGTCTCTCGGCGCATCGAAAAG
CCCTGGAAGCTGCTTGGCTTGGATGCCTGCGACTCCCTGATCTCCCTCCC
GCCCTTTATCGGTCCATCACCCAGCATGTGGCCCGGCACGTCCTTGAACA
CCTGCCACGGCCTTTGCTTCTCGCGGATTTTTTCACCGCCGCCTACGCGC
AAGGGGGTTTAACGGCCGTCATTGCCCTGGAAGGCCTCTTCGTTCTGATG
CAGGCGCACAATTTGGAATACCCGAGCTTCTATTGCTCTCTCTACCGGCT
CCTGAGCCCCGGGCCTCAAGTCTTGTACTCCCGGCACCGGGCACGGTTCT
TCCGCCTCCTCCGTCTCTGCCTCATCTCCACCCTGGTCCCCGCCCACGTG
GTCGCTGCTTTCCTGAAGCGCTTGGGCCGACTTTCCCTGCGTGCGCCCGC
CCCGTCCGTCATTTTTTTCCTCTCTCTCCTTACGGTAGTCCTTCGCGCCC
ACCCAAGCTGCCTTGCCCTCTTGCATCGGTCCCGAGCGCTGAAGGGGATC
GACGAAGCTCAGGCCGTAGATCGATTCGACCCGGGCGTCGAGGATCCGGC
TGCTGCTTTCCAAATGACGGAGTTTGCCGCGGGAAAACACGAGGGAGAGG
ACCAAGACGGGAATAACGATGCTCAGATGGGGGGGATTCAGACATCCCTG
TGGGAAGTGGCGGCCTTGCAGATGCATTATCACCACGCCGTTGCTTCGCT
TGCGAAAGGACTGGAGATTACCACCCCAGAGGATCCAAAAAAGCCCCTTT
CAATGAACATGGAGGCGATGGCTTCGTATACGTACACAGAGCTTTTCACC
CTGGAGGGGAAGTATTGGAAGAGGGGGAAGAAGGAGGAGATGGCGGGCAG
GAAACGGCGAAGGAAAGGTCTGGAGGGAGGTCAAGAGGAAGGTGTGGCCC
TTGCCCATGAAAGAAAGCCAAGGTCAGGGAAGCTTTTTCAAGCAGGAGAC
GTTTTCGACGGTCTCTTTGTCTTGCCCTCCCTGTCCGCCGTGAGAAAAGA
GTAAGAAGGGCAACGTGATACGGAGGACAAGAGTGGGAAACGAAGCACCG
AGAAAATAATATGGGCGCAGAATTGCCCCT

Coding sequence (CDS) from alignment at CM002469.1:103863..106392-

>rna6623 ID=rna6623|Name=rna6623|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at CM002469.1:103863..106392- (Nannochloropsis gaditana)
ATGCGGTCTTCCAAAATACGCAAGGTAGCAGAGGTTGAGGTTGCATTCCC
TCTTTCATCTCCTCCTCCTTCATCCGCCTCTGCCTCCGGTACACCAAGCA
GTATCTTGACAACCATACGTGACATTGAGCGCGGCATACTGGATGGACAG
GACCTGCAGCACTTAAATGGACTTACATTACTTCTTGTACATGTCCGGGC
CTTACTTCAATCCATGATTGGAGCGCTGGAGGAGGAGAGTGGTGCAGAAA
AAGTGCTGAACAACAAGGACAGGGAGGTTGCCGGCTTACAGTCTATGCAT
GCTTTGCGGCGCATCTTCACGGCGTTAGTCAATCGGGGAGACGTGCGAAA
ACCAATAACCAAAGATTCCACTACTGCTTCCAGTCCTGTAAATGCCATTA
CCCCGGATACGTCCCTCGCAAAAACTTCGGGTGCTCTGGGGAAGGGCGAA
GTTTTGTCTGGCGCAAGTAGAGCGCAAGGTCGCAAGCGTGCAGGCCACGT
GGAAATTCAGGAGCATCAGAATGAGACTCATGCCGTAAATGCAGAGGAAT
CGCTGCGTATATTTCGCCAATGGGCGTACCGCCAGTACGCCACTTTCCTT
TCTCTTCTACTCGACCTAGTGGAGGGCAAAGCTCACGACATAGCCCACCA
CTCTTCCTCCTCATCCTCTTCCTCTTCTTTAACATCCATAAAACCTGCTT
TCTCTATTAAGGTGCGCATTCGCGCCGCAGCCCTTCGCACCATCATGGAG
ATGGTGAAAGTGGAAAGCGTGGTTTTGCACAAGAACTACCGTTCCTTCGG
GCACGAGCTGTTCTACCGGCTTCTTATGGGACTACTCAGCAGCAGTACCA
ACAGTATCAGCTCCCGCCACAGCCATAAGTATGGCAACTCTGACAAAGAG
GAGGAATCTAGAAAAGTAGTCGATGCGCGGGACCTGGCGGACCTGCTGGA
GGTTCTCCGTGTTGACTACATAGAGCCCTACTGTGACGTTCGCTATTGGC
TCCTAAAAGGGCTGGGAATCTGGGCGAGAAAGGAGCTGAAAGAGGGACGA
TGTAGGACATCCACGGAACAAGAAGAGGCATCAAGGACGGAGACGGCATT
GAAGCTGTTGATGATGGTGCGATTGAGCGAGGAGGAATCGGCGATGCGCT
TACTCTGGGTGTCGCTTCAGGATGAAAAGGGGGATGGGGCATTGCTGCCG
AACCAGGGAGGGAAGGAGGAAGAGGAAGAGGAGGAAGAGACCGGGTGGGA
TTGGTCGGGAGACGAGGGGATGGGCCATGAGGAGGACGAGGAGGCACTCG
GGAAAGACGGCGCCAGGGAGCGCGTTCCCAACGTGGCGAGTCTCTCGGCG
CATCGAAAAGCCCTGGAAGCTGCTTGGCTTGGATGCCTGCGACTCCCTGA
TCTCCCTCCCGCCCTTTATCGGTCCATCACCCAGCATGTGGCCCGGCACG
TCCTTGAACACCTGCCACGGCCTTTGCTTCTCGCGGATTTTTTCACCGCC
GCCTACGCGCAAGGGGGTTTAACGGCCGTCATTGCCCTGGAAGGCCTCTT
CGTTCTGATGCAGGCGCACAATTTGGAATACCCGAGCTTCTATTGCTCTC
TCTACCGGCTCCTGAGCCCCGGGCCTCAAGTCTTGTACTCCCGGCACCGG
GCACGGTTCTTCCGCCTCCTCCGTCTCTGCCTCATCTCCACCCTGGTCCC
CGCCCACGTGGTCGCTGCTTTCCTGAAGCGCTTGGGCCGACTTTCCCTGC
GTGCGCCCGCCCCGTCCGTCATTTTTTTCCTCTCTCTCCTTACGGTAGTC
CTTCGCGCCCACCCAAGCTGCCTTGCCCTCTTGCATCGGTCCCGAGCGCT
GAAGGGGATCGACGAAGCTCAGGCCGTAGATCGATTCGACCCGGGCGTCG
AGGATCCGGCTGCTGCTTTCCAAATGACGGAGTTTGCCGCGGGAAAACAC
GAGGGAGAGGACCAAGACGGGAATAACGATGCTCAGATGGGGGGGATTCA
GACATCCCTGTGGGAAGTGGCGGCCTTGCAGATGCATTATCACCACGCCG
TTGCTTCGCTTGCGAAAGGACTGGAGATTACCACCCCAGAGGATCCAAAA
AAGCCCCTTTCAATGAACATGGAGGCGATGGCTTCGTATACGTACACAGA
GCTTTTCACCCTGGAGGGGAAGTATTGGAAGAGGGGGAAGAAGGAGGAGA
TGGCGGGCAGGAAACGGCGAAGGAAAGGTCTGGAGGGAGGTCAAGAGGAA
GGTGTGGCCCTTGCCCATGAAAGAAAGCCAAGGTCAGGGAAGCTTTTTCA
AGCAGGAGACGTTTTCGACGGTCTCTTTGTCTTGCCCTCCCTGTCCGCCG
TGAGAAAAGAGTAA

Synonyms

Publications