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Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100325g1.3130.mrna |
Orig protein id | gnl|cribi|Naga_100325g1.3130 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002468.1 | supercontig | CM002468.1:655253..659325 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6501 ID=rna6501|Name=rna6501|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp TTGTACAGGGCTACGTAGCAACGAGAGAATGCGAGCAAGGTTGCTGTCGA CGGCAAGGGTCGGGTGCGGCCTTTCTTTTCCTTTTTCTCAGGTCAATGCG CGCGCTATTCGAAGTCAGAGCAGCAATGTCTCCGCGCCGAGTCCTCCACC CGCGCCGTCTGAGGACGAAAAGCCCCAGGTGCACCTTCGGCAGTATTTGG ACGCGTGGATGGGCAGCACAGGGACAGTCAGCACGCCTCGACACCAGAAT CAAGAGAGTCCCGCCGCAAGTCGAGACGCACAGCAGCCTTTCTCCCCCCC TCATGCTCCTCCCATCGCCATGACGGTGGCGGGAAAGTCCTACCTGGTCC CCACCCTCCGCCTGCCTCGCGGATTGTCACCCTCCGAATTGAAAGCTGGG CTACGTGCCACTACGAGTTTGAGCGCCGGATACTTTCAAAGCGCCCCCAT GGTCGTGGATCTGGGGGAGTGGCTGATTTCTCAGCCTTTGCCCCGCGGTG GCGTGCGGACGGCGTCCGCAGGCGTGGGCGGGGAGGTGCTGGACGGGACC CTCCTCGCTACCTTTGTGGCGGCGATGAAGGAGGCAGGGCTCCATCCTGT GGGCATCGCGAATGCCACCGCTACCGACGTTCGAGCGGCGGCCTTGGAGC TGGGATTGCCCTGCTTCATGGCCCGACACGCGCCTCCCTCCCCTTCGACG CCGGCGCCTGCGCTCGCTTCCGTCAAGGCTAGCGCCCCTGTGCCCCCACA GCGGCGAACAGAGAAGGAAGGAACCAGGGCTTCGGCCTCGCGGCCCGCAC CGACCACCCCGCCCTCCCCCCCGCCCTCCCCCCCGCCCTCCTCCTCCACT AGGCCGCCACCTTCCACATCCACCGTCCGCGCCAGCCCTACCGCCTCCCC GCCCCTTTCTCCTCCGCCCTCCTCCCTCCCCGCCATGGTGGTGCAAGGCA GTGTCCGCACGGGGCAGCAGGTGGTCGCGGAGGGGACGTCCTTGGTCGTG CTGGGCCACGTCCACTCGGGGGCCGAGGTCTCCGCCGACGGGGACATCCA CATCTACGGCAAGCTCACTGGAAGGGCCCTGGCGGGCTTGTCGGGGGACG TGCGGGCCAATATATTTGTGGGGAGGTTCAACGCGGAGCTGGTGGCGATC GGAGAGGTCTTCACCACCTGTGACGTGGGGGAGGGAGGGGGGAGGGGGAG GAGGGAGGGGTGCAGGGCGTGGTCGGGGGGCCTGCGAGTGTCTCTCTGGA GGAAAAGACGGGCCAGCTCGTGTTTCGTACCTTCAAGGTATAGCTCTTTG CCGAGTCCTCTTCAGGAAGACGGCGGGCAGGGAGGGAGGGAGGGAGGGAG GGAGGGGGTTCCTGACTTCCCACCAGTGCTAGGGAGCCTCACAGGAGCAA AAAATGGGTTTGGAAGCTTGAGGTCCTTGATGGGTGTGGATTTGTGGAAA ATGCGATCCGGAGGAGGGCGGTCTTCCATGGCGGGAAGGAGGGGCACGGG CGTGCCCAAGGCCTGAGGCGAGGGGAAGGACGAGAAAGAGAGCTTGGGGG GACCCTGCGGGTGAGAAAAGTAAACAACAGCACTCGTGGCGTCGTCTCTC GAAGGAATGTTTTATTCCC back to topprotein sequence of rna6501 >rna6501-protein ID=rna6501-protein|Name=rna6501|organism=Nannochloropsis gaditana|type=polypeptide|length=1277bp MGAKRSSSVVRETGTGIRGESAHRKRQRAAPPLGSHDATGLEQEKNLIPG LGRPREGHGKKEECAPDLFGDDLEIFDMDSDFDHVLYENGGRSPDQNRQP ASRPVEAGDAGDGLWDMPSLGDGGNIDATAGMALPVPTPPPCTALPSPAT ASSSSPTQAPLPSPSHASVPTPALQSVQASSSPFPCPATEAGQWEAPRGD REGESRFPRAPGQEQGRAVGGGTGGSESSSHTCASASQTGGKLPGGWGGI GRAKKSSNGRVSTKDVKAQLRGDPGVIMELYQDGVRFGLGGMAWSSGTRG IAPGPGSCSAPAPRVLVRRAGGEVMGPLQPYSARVRDMLRCLDQSAVLPL EILRTLPASPHTRGRDRVVMECRDRRPRCFYQGQTENVGATRTPGTDVHV SRAFIHLPGPVLAQDLEQALPSHAAPSLGAPVHTTLSGGSGKGRGANPGG GKKGTAGGPAPTFTVAEMMSHDQMVQDEAIRLEQSMLQAAFPSFPDTEAP PASAPSLPLDRPPPPVPYRRQHYRLLAPPTSVLDTRIAQPPSVSNRRVTE PVAGMTEALEELDMDWADLHALFSEEDPRPPCPPPLGAASSHSSCDADAA ERALHSSLLSLPGNASSLTLGGRPEGGEVLHPVLLKRETSEPMRGLAVLG MSPGNAVDALASPGSFENILPGGKAPGLPTAHPFVKAIPTASPLSRRAGG EDARLAATAGTERLSRPSPRGDRRAPSARPPSITFAAMSKAQERFRHVSI QVLANAQETGQQAATRAQQQQRQPPQRRSVVPTLAKKALSLGSGMSVEEL VGRQGSGTTKAGEERGEICPTQAAGFPPPPPSHVAHTMRHRAHPGHPHLP PSLRPAVTPTLPPAPTPTRVPSARSTLSYPLASHAPTAIGVHAAGGEFAT LSSVPGGNRAPQAPPEHQQQTGRQLLQAPPGALSEHAGLAYARSSHALPW NPNSIAAGGGRALETPVSPLETLTGQMRPGGMPSELPKPHKQDLQYRPAP PVNSHPQRQQYCLPQHQQPPSPAPFQRQDHAQQGQHRDPPPLLQAPIPQS NRLAPLQQIQAGQEVIPTEATRGLLPYYKAGSSRSALPPHSQSSCQQQQS PQHLTEQFFTGQRAAERKGTVSPYVLEQLKLQWFRQQQQQQPRQPQPAPR PLPHQQPQQQQPRPQQQQQQQQQQQQHRQQRHLHSQQQHRQQQHLQSQEP PPHQQQYHQPQHQQRPPQQPRHHQTQQQQQQQQQQQQQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQ back to topmRNA from alignment at CM002468.1:655253..659325+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6501 ID=rna6501|Name=rna6501|organism=Nannochloropsis gaditana|type=mRNA|length=4073bp|location=Sequence derived from alignment at CM002468.1:655253..659325+ (Nannochloropsis gaditana) TTCACAGGTCTTCCAAGGCCCGCTAGAGCACTCTACAAGCGGCACATCCA
CGCGGCTTATATTTCTAGCCTCCCTTAAATAGCTTATCGAGGCATCCTGG
GATGCTGGGGAGACAATATCTGAGGGTGTAGGAGCGGTGGCAGCCTCGTA
CACGAACAGGGCTTCTTGGAATAAGCCGTTGTCGGGCATCAAAATTGAAG
GCAAAAGCACAGACACGCCCGCTTGAATCCTATCGTCCACCATGGGAGCC
AAAAGATCGTCGAGCGTCGTGCGTGAAACTGGAACCGGCATCCGGGGTGA
ATCTGCGCATCGGAAACGCCAGCGGGCGGCGCCCCCCCTGGGGTCGCATG
ATGCCACTGGGCtcgagcaggaaaaaaatctgATTCCAGGGCTAGGCCGC
CCAAGAGAAGGTCATGGCAAAAAAGAGGAGTGCGCGCCGGACCTGTTCGG
CGACGATCTGGAGATTTTCGACATGGACTCCGACTTTGACCACGTGCTGT
ATGAGAACGGAGGGCGGTCGCCGGACCAGAACCGGCAGCCGGCTTCCCGC
CCAGTTGAGGCGGGCGACGCGGGCGACGGCCTCTGGGATATGCCCAGCCT
GGGTGATGGCGGGAACATCGATGCCACGGCTGGCATGGCCCTTCCGGTGC
CAACCCCTCCACCATGCACGGCCCTCCCGAGCCCCGCGacggcgtcgtcc
tcctcccctacacaggctccccttccctcgccttcACACGCATCCGTCCC
AACCCCGGCACTGCAATCGGTgcaagcttcctcctctcccttcccatgcc
CGGCGACCGAAGCCGGTCAATGGGAGGCTCCTcgtggagacagggaggga
gaaagtcgTTTCCCGCGCGCCCCAGGGCAGGAACAAGGAAGGGCCGTGGG
GGGTGGGACTGGTGGCAGtgagagcagcagccacacGTGCGCGAGCGCCA
GCCAGACAGGAGGCAAGCTTCCTggaggttggggagggaTCGGCCGGGCG
AAGAAATCGAGCAACGGTCGGGTCAGCACCAAGGATGTGAAGGCGCAGCT
TCGGGGGGACCCGGGCGTGATCATGGAGCTTTATCAGGACGGGGTGCGCT
TTGGCCTGGGGGGTATGGCCTGGTCCTCCGGGACCAGAGGGATAGCGCCC
GGTCCTGGAAGCTGctcggccccggccccccggGTTCTGGTAcggagggc
aggcggcgagGTGATGGGGCCCCTCCAGCCTTACTCCGCCCGCGTCCGGG
ACATGCTCCGATGCCTGGACCAGAGCGCGGTCTTGCCCTTGGAGATCCTC
CGGACGTTGCCCGCGTCGCCACACACGCGTGGGCGAGACCGGGTGGTGAT
GGAGTGCCGCGACCGACGTCCGCGGTGTTTTTACCAGGGCCAGACCGAGA
ACGTTGGGGCCACCCGCACGCCGGGCACAGACGTTCACGTGTCGAGGGCC
TTTATTCATCTCCcgggccccgtcctcgcccaagACCTGGAgcaggccct
cccctcccatgctGCCCCGTCCCTCGGCGCGCCGGTCCACACGACCCTGT
CCGGGGGCtccgggaaggggaggggggcgaacccgggagggggcaagaag
gggaCAGCAGGAGGCCCCGCACCCACCTTCACGGTGGCGGAGATGATGTC
GCACGACCAGATGGTGCAGGACGAGGCGATTCGGTTGGAACAAAGCATGC
TCCAGGCagccttcccgtccttccccgacACGGAGGCCCCCCCGGCGTcg
gctccttccctccccctcgatcgaccccccccacccgtcccTTACCGCCG
CCAGCACTACCGGTTGctggcccctcccacctccgtGTTGGATACCCGGA
TCGCCCAGCCCCCCTCCGTGTCTAATCGACGCGTGACGGAACCCGTGGCG
GGAatgacggaggccttggaggagctggacatGGACTGGGCGGACCTGCA
CGCCCTCTTCTCGGAGGAAGATCCGCGGcccccttgtccgcctcccctgg
gtgccgcgtcctcccactcctcctgcGACGCCGACGCCGCCGAGAGggcc
ctccattcctccctgtTGTCCCTGCCTGGGAAcgcgtcctccctgaccCT
GGGGGGGAgaccggaggggggggaggtgctgcACCCAGTGCTGCTAAAGC
GGGAGACATCGGAGCCCATGAGGGGCCTGGCCGTGCTCGGGATGAGTCCA
GGGAACGCGGTGGACGCACTGGCCTCCCCTGGTTCGTTCGAGAACATTCT
CCCGGGTGGGAAGGCCCCAGGTCTACCTACAGCCCACCCGTTCGTCAAGG
CCATCCCCACGGCAAGCCCCTTGTcccggcgggcgggcggggaggacgcg
aggctggcggcgacggcgggcaCGGAACGGCTTTCAAGACCCTCTCCAAG
GGGCGACAGGCGAGCTCCCTCTGCCCGTCCGCCGTCCATCACGTTCGCTG
CCATGTCGAAAGCGCAGGAGCGGTTTCGGCACGTCTCGATCCAAGTCTTG
GCGAACGCTCAAGAAACGGGGCAGCAAGCAGCCACCCGCgcccagcaaca
acaacggCAGCCGCCTCAGCGCCGAAGCGTGGTGCCGACCCTGGCGAAGA
AGGCTCTGTCTCTGGGATCGGGTATGAGCGTGGAGGAACTCGTGGGGAGG
CAAGGCAGCGGAACTACCAAAGCcggggaggaacggggagagATTTGTCC
AACGCAGGCAGCAGgctttcccccaccccctccctcgcatgtCGCACACA
CCATGCGTCATCGGGCCCACCCGGGCCATCCACacctgccgccctccctc
cgtcccgccgtaactcccaccctcccgcccgccccgaccCCTACGAGGGT
GCCGTCGGCCCGCTCTACGCTTTCTTACCCCTTGGCTTCGCATGCGCCCA
CCGCAATAGGGGTACACGCGGCCGGTGGAGAATTCGCCACGCTCTCTTCT
GTTCCAGGAGGAAACCGAGCGCCGCAAGCACCCCCCgagcaccagcagca
aacTGGACGGCAGCTCTTGCAGGCACCGCCAGGGGCTCTGTCCGAGCACG
CAGGACTCGCTTATGCCCGCAGTAGTCATGCGCTCCCTTGGAACCCGAAT
TCTATCGctgcaggcggggggagggctctGGAGACGCCGGTCTCTCCCCT
CGAGACGCTCACAGGGCAGATGCGGCCAGGGGGGATGCCGTCGGAGCTAC
CCAAGCCACACAAGCAAGACCTCCAGTACCGCCCCGCGCCACCCGTCAAC
TCGCACCCACAGCGGCAGCAGTATTGCTTGccacagcaccagcagccgcC
GTCGCCAGCCCCTTTCCAACGTCAAGATCATGCCCAGCAAGGCCAGCACC
GAGACCCACCGCCTCTCCTACAAGCACCGATCCCGCAATCCAATCGATTG
GCCCCGCTCCAGCAGATTCAGGCGGGGCAAGAGGTGATCCCCACCGAAGC
CACACGTGGTCTATTGCCATATTACAAGGCAGGATCGTCGCGAAGCGCGC
TGCCGCCGCATTCCCAGTCGTCTTGCCAGCAACAGCAGTCTCCACAGCAT
TTGACCGAGCAGTTCTTCACGGGACAGAGGGCAgcggaaagaaagggaac
tGTCTCTCCCTATGTGCTGGAGCAACTCAAACTCCAGTGGTttcggcagc
agcaacaacaacaaccacgACAACCACAGCCAGCACCACGACCGCTACCA
CACCAACAACcccaacaacaacaaccacgaccacaacaacaacaacaaca
acaacaacaacaacaacaacataGACAACAACGACACTTGCACTCtcaac
aacaacatcgacaacaacaacacTTGCAATCACAAGAGCCACCACCACAC
CAACAACAATATCATCAACCACAACATCAACAACGGCCACCACAACAACC
ACGACATCACCAaacacaacaacaacaacaacaacaacaacaacaacaac
aacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacaacaacaacaacaacaac back to topCoding sequence (CDS) from alignment at CM002468.1:655253..659325+ >rna6501 ID=rna6501|Name=rna6501|organism=Nannochloropsis gaditana|type=CDS|length=3832bp|location=Sequence derived from alignment at CM002468.1:655253..659325+ (Nannochloropsis gaditana) ATGGGAGCCAAAAGATCGTCGAGCGTCGTGCGTGAAACTGGAACCGGCAT CCGGGGTGAATCTGCGCATCGGAAACGCCAGCGGGCGGCGCCCCCCCTGG GGTCGCATGATGCCACTGGGCtcgagcaggaaaaaaatctgATTCCAGGG CTAGGCCGCCCAAGAGAAGGTCATGGCAAAAAAGAGGAGTGCGCGCCGGA CCTGTTCGGCGACGATCTGGAGATTTTCGACATGGACTCCGACTTTGACC ACGTGCTGTATGAGAACGGAGGGCGGTCGCCGGACCAGAACCGGCAGCCG GCTTCCCGCCCAGTTGAGGCGGGCGACGCGGGCGACGGCCTCTGGGATAT GCCCAGCCTGGGTGATGGCGGGAACATCGATGCCACGGCTGGCATGGCCC TTCCGGTGCCAACCCCTCCACCATGCACGGCCCTCCCGAGCCCCGCGacg gcgtcgtcctcctcccctacacaggctccccttccctcgccttcACACGC ATCCGTCCCAACCCCGGCACTGCAATCGGTgcaagcttcctcctctccct tcccatgccCGGCGACCGAAGCCGGTCAATGGGAGGCTCCTcgtggagac agggagggagaaagtcgTTTCCCGCGCGCCCCAGGGCAGGAACAAGGAAG GGCCGTGGGGGGTGGGACTGGTGGCAGtgagagcagcagccacacGTGCG CGAGCGCCAGCCAGACAGGAGGCAAGCTTCCTggaggttggggagggaTC GGCCGGGCGAAGAAATCGAGCAACGGTCGGGTCAGCACCAAGGATGTGAA GGCGCAGCTTCGGGGGGACCCGGGCGTGATCATGGAGCTTTATCAGGACG GGGTGCGCTTTGGCCTGGGGGGTATGGCCTGGTCCTCCGGGACCAGAGGG ATAGCGCCCGGTCCTGGAAGCTGctcggccccggccccccggGTTCTGGT AcggagggcaggcggcgagGTGATGGGGCCCCTCCAGCCTTACTCCGCCC GCGTCCGGGACATGCTCCGATGCCTGGACCAGAGCGCGGTCTTGCCCTTG GAGATCCTCCGGACGTTGCCCGCGTCGCCACACACGCGTGGGCGAGACCG GGTGGTGATGGAGTGCCGCGACCGACGTCCGCGGTGTTTTTACCAGGGCC AGACCGAGAACGTTGGGGCCACCCGCACGCCGGGCACAGACGTTCACGTG TCGAGGGCCTTTATTCATCTCCcgggccccgtcctcgcccaagACCTGGA gcaggccctcccctcccatgctGCCCCGTCCCTCGGCGCGCCGGTCCACA CGACCCTGTCCGGGGGCtccgggaaggggaggggggcgaacccgggaggg ggcaagaaggggaCAGCAGGAGGCCCCGCACCCACCTTCACGGTGGCGGA GATGATGTCGCACGACCAGATGGTGCAGGACGAGGCGATTCGGTTGGAAC AAAGCATGCTCCAGGCagccttcccgtccttccccgacACGGAGGCCCCC CCGGCGTcggctccttccctccccctcgatcgaccccccccacccgtccc TTACCGCCGCCAGCACTACCGGTTGctggcccctcccacctccgtGTTGG ATACCCGGATCGCCCAGCCCCCCTCCGTGTCTAATCGACGCGTGACGGAA CCCGTGGCGGGAatgacggaggccttggaggagctggacatGGACTGGGC GGACCTGCACGCCCTCTTCTCGGAGGAAGATCCGCGGcccccttgtccgc ctcccctgggtgccgcgtcctcccactcctcctgcGACGCCGACGCCGCC GAGAGggccctccattcctccctgtTGTCCCTGCCTGGGAAcgcgtcctc cctgaccCTGGGGGGGAgaccggaggggggggaggtgctgcACCCAGTGC TGCTAAAGCGGGAGACATCGGAGCCCATGAGGGGCCTGGCCGTGCTCGGG ATGAGTCCAGGGAACGCGGTGGACGCACTGGCCTCCCCTGGTTCGTTCGA GAACATTCTCCCGGGTGGGAAGGCCCCAGGTCTACCTACAGCCCACCCGT TCGTCAAGGCCATCCCCACGGCAAGCCCCTTGTcccggcgggcgggcggg gaggacgcgaggctggcggcgacggcgggcaCGGAACGGCTTTCAAGACC CTCTCCAAGGGGCGACAGGCGAGCTCCCTCTGCCCGTCCGCCGTCCATCA CGTTCGCTGCCATGTCGAAAGCGCAGGAGCGGTTTCGGCACGTCTCGATC CAAGTCTTGGCGAACGCTCAAGAAACGGGGCAGCAAGCAGCCACCCGCgc ccagcaacaacaacggCAGCCGCCTCAGCGCCGAAGCGTGGTGCCGACCC TGGCGAAGAAGGCTCTGTCTCTGGGATCGGGTATGAGCGTGGAGGAACTC GTGGGGAGGCAAGGCAGCGGAACTACCAAAGCcggggaggaacggggaga gATTTGTCCAACGCAGGCAGCAGgctttcccccaccccctccctcgcatg tCGCACACACCATGCGTCATCGGGCCCACCCGGGCCATCCACacctgccg ccctccctccgtcccgccgtaactcccaccctcccgcccgccccgaccCC TACGAGGGTGCCGTCGGCCCGCTCTACGCTTTCTTACCCCTTGGCTTCGC ATGCGCCCACCGCAATAGGGGTACACGCGGCCGGTGGAGAATTCGCCACG CTCTCTTCTGTTCCAGGAGGAAACCGAGCGCCGCAAGCACCCCCCgagca ccagcagcaaacTGGACGGCAGCTCTTGCAGGCACCGCCAGGGGCTCTGT CCGAGCACGCAGGACTCGCTTATGCCCGCAGTAGTCATGCGCTCCCTTGG AACCCGAATTCTATCGctgcaggcggggggagggctctGGAGACGCCGGT CTCTCCCCTCGAGACGCTCACAGGGCAGATGCGGCCAGGGGGGATGCCGT CGGAGCTACCCAAGCCACACAAGCAAGACCTCCAGTACCGCCCCGCGCCA CCCGTCAACTCGCACCCACAGCGGCAGCAGTATTGCTTGccacagcacca gcagccgcCGTCGCCAGCCCCTTTCCAACGTCAAGATCATGCCCAGCAAG GCCAGCACCGAGACCCACCGCCTCTCCTACAAGCACCGATCCCGCAATCC AATCGATTGGCCCCGCTCCAGCAGATTCAGGCGGGGCAAGAGGTGATCCC CACCGAAGCCACACGTGGTCTATTGCCATATTACAAGGCAGGATCGTCGC GAAGCGCGCTGCCGCCGCATTCCCAGTCGTCTTGCCAGCAACAGCAGTCT CCACAGCATTTGACCGAGCAGTTCTTCACGGGACAGAGGGCAgcggaaag aaagggaactGTCTCTCCCTATGTGCTGGAGCAACTCAAACTCCAGTGGT ttcggcagcagcaacaacaacaaccacgACAACCACAGCCAGCACCACGA CCGCTACCACACCAACAACcccaacaacaacaaccacgaccacaacaaca acaacaacaacaacaacaacaacaacaacataGACAACAACGACACTTGC ACTCtcaacaacaacatcgacaacaacaacacTTGCAATCACAAGAGCCA CCACCACACCAACAACAATATCATCAACCACAACATCAACAACGGCCACC ACAACAACCACGACATCACCAaacacaacaacaacaacaacaacaacaac aacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaa caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca acaacaacaacaacaacaacaacaacaacaac back to top
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