Naga_100325g1, gene6281 (gene) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	Naga_100325g1
Unique Name	gene6281
Type	gene
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002468.1:655253..659325 +

Link to JBrowse

Properties


Property Name	Value
Locus tag	Naga_100325g1
Gene biotype	protein_coding
Gbkey	Gene

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:655253..659325 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
SRP229557	2021-06-30
PRJNA174770	2019-07-03
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ngnoL028	ngnoL028	Nannochloropsis gaditana (N. gaditana B-31)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02210	NO17G02210	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
rna6501	rna6501-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
rna6501	rna6501	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of rna6501

>rna6501-protein ID=rna6501-protein|Name=rna6501|organism=Nannochloropsis gaditana|type=polypeptide|length=1277bp
MGAKRSSSVVRETGTGIRGESAHRKRQRAAPPLGSHDATGLEQEKNLIPG
LGRPREGHGKKEECAPDLFGDDLEIFDMDSDFDHVLYENGGRSPDQNRQP
ASRPVEAGDAGDGLWDMPSLGDGGNIDATAGMALPVPTPPPCTALPSPAT
ASSSSPTQAPLPSPSHASVPTPALQSVQASSSPFPCPATEAGQWEAPRGD
REGESRFPRAPGQEQGRAVGGGTGGSESSSHTCASASQTGGKLPGGWGGI
GRAKKSSNGRVSTKDVKAQLRGDPGVIMELYQDGVRFGLGGMAWSSGTRG
IAPGPGSCSAPAPRVLVRRAGGEVMGPLQPYSARVRDMLRCLDQSAVLPL
EILRTLPASPHTRGRDRVVMECRDRRPRCFYQGQTENVGATRTPGTDVHV
SRAFIHLPGPVLAQDLEQALPSHAAPSLGAPVHTTLSGGSGKGRGANPGG
GKKGTAGGPAPTFTVAEMMSHDQMVQDEAIRLEQSMLQAAFPSFPDTEAP
PASAPSLPLDRPPPPVPYRRQHYRLLAPPTSVLDTRIAQPPSVSNRRVTE
PVAGMTEALEELDMDWADLHALFSEEDPRPPCPPPLGAASSHSSCDADAA
ERALHSSLLSLPGNASSLTLGGRPEGGEVLHPVLLKRETSEPMRGLAVLG
MSPGNAVDALASPGSFENILPGGKAPGLPTAHPFVKAIPTASPLSRRAGG
EDARLAATAGTERLSRPSPRGDRRAPSARPPSITFAAMSKAQERFRHVSI
QVLANAQETGQQAATRAQQQQRQPPQRRSVVPTLAKKALSLGSGMSVEEL
VGRQGSGTTKAGEERGEICPTQAAGFPPPPPSHVAHTMRHRAHPGHPHLP
PSLRPAVTPTLPPAPTPTRVPSARSTLSYPLASHAPTAIGVHAAGGEFAT
LSSVPGGNRAPQAPPEHQQQTGRQLLQAPPGALSEHAGLAYARSSHALPW
NPNSIAAGGGRALETPVSPLETLTGQMRPGGMPSELPKPHKQDLQYRPAP
PVNSHPQRQQYCLPQHQQPPSPAPFQRQDHAQQGQHRDPPPLLQAPIPQS
NRLAPLQQIQAGQEVIPTEATRGLLPYYKAGSSRSALPPHSQSSCQQQQS
PQHLTEQFFTGQRAAERKGTVSPYVLEQLKLQWFRQQQQQQPRQPQPAPR
PLPHQQPQQQQPRPQQQQQQQQQQQQHRQQRHLHSQQQHRQQQHLQSQEP
PPHQQQYHQPQHQQRPPQQPRHHQTQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQ

Synonyms

Publications