EWM24188.1, cds6485 (CDS) Nannochloropsis gaditana

Overview
NameEWM24188.1
Unique Namecds6485
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:655494..659325 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24188.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100325g1.3130.mrna
GbkeyCDS
End range.
End range659325
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:655494..659325 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24188.1 vs. NCBI_GenBank
Match: gi|585105574|gb|EWM24188.1| (hypothetical protein Naga_100325g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 2518.42 bits (6526), Expect = 0.000e+0
Identity = 1277/1277 (100.00%), Postives = 1277/1277 (100.00%), Query Frame = 0 
Query:    1 MGAKRSSSVVRETGTGIRGESAHRKRQRAAPPLGSHDATGLEQEKNLIPGLGRPREGHGKKEECAPDLFGDDLEIFDMDSDFDHVLYENGGRSPDQNRQPASRPVEAGDAGDGLWDMPSLGDGGNIDATAGMALPVPTPPPCTALPSPATASSSSPTQAPLPSPSHASVPTPALQSVQASSSPFPCPATEAGQWEAPRGDREGESRFPRAPGQEQGRAVGGGTGGSESSSHTCASASQTGGKLPGGWGGIGRAKKSSNGRVSTKDVKAQLRGDPGVIMELYQDGVRFGLGGMAWSSGTRGIAPGPGSCSAPAPRVLVRRAGGEVMGPLQPYSARVRDMLRCLDQSAVLPLEILRTLPASPHTRGRDRVVMECRDRRPRCFYQGQTENVGATRTPGTDVHVSRAFIHLPGPVLAQDLEQALPSHAAPSLGAPVHTTLSGGSGKGRGANPGGGKKGTAGGPAPTFTVAEMMSHDQMVQDEAIRLEQSMLQAAFPSFPDTEAPPASAPSLPLDRPPPPVPYRRQHYRLLAPPTSVLDTRIAQPPSVSNRRVTEPVAGMTEALEELDMDWADLHALFSEEDPRPPCPPPLGAASSHSSCDADAAERALHSSLLSLPGNASSLTLGGRPEGGEVLHPVLLKRETSEPMRGLAVLGMSPGNAVDALASPGSFENILPGGKAPGLPTAHPFVKAIPTASPLSRRAGGEDARLAATAGTERLSRPSPRGDRRAPSARPPSITFAAMSKAQERFRHVSIQVLANAQETGQQAATRAQQQQRQPPQRRSVVPTLAKKALSLGSGMSVEELVGRQGSGTTKAGEERGEICPTQAAGFPPPPPSHVAHTMRHRAHPGHPHLPPSLRPAVTPTLPPAPTPTRVPSARSTLSYPLASHAPTAIGVHAAGGEFATLSSVPGGNRAPQAPPEHQQQTGRQLLQAPPGALSEHAGLAYARSSHALPWNPNSIAAGGGRALETPVSPLETLTGQMRPGGMPSELPKPHKQDLQYRPAPPVNSHPQRQQYCLPQHQQPPSPAPFQRQDHAQQGQHRDPPPLLQAPIPQSNRLAPLQQIQAGQEVIPTEATRGLLPYYKAGSSRSALPPHSQSSCQQQQSPQHLTEQFFTGQRAAERKGTVSPYVLEQLKLQWFRQQQQQQPRQPQPAPRPLPHQQPQQQQPRPQQQQQQQQQQQQHRQQRHLHSQQQHRQQQHLQSQEPPPHQQQYHQPQHQQRPPQQPRHHQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1277
            MGAKRSSSVVRETGTGIRGESAHRKRQRAAPPLGSHDATGLEQEKNLIPGLGRPREGHGKKEECAPDLFGDDLEIFDMDSDFDHVLYENGGRSPDQNRQPASRPVEAGDAGDGLWDMPSLGDGGNIDATAGMALPVPTPPPCTALPSPATASSSSPTQAPLPSPSHASVPTPALQSVQASSSPFPCPATEAGQWEAPRGDREGESRFPRAPGQEQGRAVGGGTGGSESSSHTCASASQTGGKLPGGWGGIGRAKKSSNGRVSTKDVKAQLRGDPGVIMELYQDGVRFGLGGMAWSSGTRGIAPGPGSCSAPAPRVLVRRAGGEVMGPLQPYSARVRDMLRCLDQSAVLPLEILRTLPASPHTRGRDRVVMECRDRRPRCFYQGQTENVGATRTPGTDVHVSRAFIHLPGPVLAQDLEQALPSHAAPSLGAPVHTTLSGGSGKGRGANPGGGKKGTAGGPAPTFTVAEMMSHDQMVQDEAIRLEQSMLQAAFPSFPDTEAPPASAPSLPLDRPPPPVPYRRQHYRLLAPPTSVLDTRIAQPPSVSNRRVTEPVAGMTEALEELDMDWADLHALFSEEDPRPPCPPPLGAASSHSSCDADAAERALHSSLLSLPGNASSLTLGGRPEGGEVLHPVLLKRETSEPMRGLAVLGMSPGNAVDALASPGSFENILPGGKAPGLPTAHPFVKAIPTASPLSRRAGGEDARLAATAGTERLSRPSPRGDRRAPSARPPSITFAAMSKAQERFRHVSIQVLANAQETGQQAATRAQQQQRQPPQRRSVVPTLAKKALSLGSGMSVEELVGRQGSGTTKAGEERGEICPTQAAGFPPPPPSHVAHTMRHRAHPGHPHLPPSLRPAVTPTLPPAPTPTRVPSARSTLSYPLASHAPTAIGVHAAGGEFATLSSVPGGNRAPQAPPEHQQQTGRQLLQAPPGALSEHAGLAYARSSHALPWNPNSIAAGGGRALETPVSPLETLTGQMRPGGMPSELPKPHKQDLQYRPAPPVNSHPQRQQYCLPQHQQPPSPAPFQRQDHAQQGQHRDPPPLLQAPIPQSNRLAPLQQIQAGQEVIPTEATRGLLPYYKAGSSRSALPPHSQSSCQQQQSPQHLTEQFFTGQRAAERKGTVSPYVLEQLKLQWFRQQQQQQPRQPQPAPRPLPHQQPQQQQPRPQQQQQQQQQQQQHRQQRHLHSQQQHRQQQHLQSQEPPPHQQQYHQPQHQQRPPQQPRHHQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
Sbjct:    1 MGAKRSSSVVRETGTGIRGESAHRKRQRAAPPLGSHDATGLEQEKNLIPGLGRPREGHGKKEECAPDLFGDDLEIFDMDSDFDHVLYENGGRSPDQNRQPASRPVEAGDAGDGLWDMPSLGDGGNIDATAGMALPVPTPPPCTALPSPATASSSSPTQAPLPSPSHASVPTPALQSVQASSSPFPCPATEAGQWEAPRGDREGESRFPRAPGQEQGRAVGGGTGGSESSSHTCASASQTGGKLPGGWGGIGRAKKSSNGRVSTKDVKAQLRGDPGVIMELYQDGVRFGLGGMAWSSGTRGIAPGPGSCSAPAPRVLVRRAGGEVMGPLQPYSARVRDMLRCLDQSAVLPLEILRTLPASPHTRGRDRVVMECRDRRPRCFYQGQTENVGATRTPGTDVHVSRAFIHLPGPVLAQDLEQALPSHAAPSLGAPVHTTLSGGSGKGRGANPGGGKKGTAGGPAPTFTVAEMMSHDQMVQDEAIRLEQSMLQAAFPSFPDTEAPPASAPSLPLDRPPPPVPYRRQHYRLLAPPTSVLDTRIAQPPSVSNRRVTEPVAGMTEALEELDMDWADLHALFSEEDPRPPCPPPLGAASSHSSCDADAAERALHSSLLSLPGNASSLTLGGRPEGGEVLHPVLLKRETSEPMRGLAVLGMSPGNAVDALASPGSFENILPGGKAPGLPTAHPFVKAIPTASPLSRRAGGEDARLAATAGTERLSRPSPRGDRRAPSARPPSITFAAMSKAQERFRHVSIQVLANAQETGQQAATRAQQQQRQPPQRRSVVPTLAKKALSLGSGMSVEELVGRQGSGTTKAGEERGEICPTQAAGFPPPPPSHVAHTMRHRAHPGHPHLPPSLRPAVTPTLPPAPTPTRVPSARSTLSYPLASHAPTAIGVHAAGGEFATLSSVPGGNRAPQAPPEHQQQTGRQLLQAPPGALSEHAGLAYARSSHALPWNPNSIAAGGGRALETPVSPLETLTGQMRPGGMPSELPKPHKQDLQYRPAPPVNSHPQRQQYCLPQHQQPPSPAPFQRQDHAQQGQHRDPPPLLQAPIPQSNRLAPLQQIQAGQEVIPTEATRGLLPYYKAGSSRSALPPHSQSSCQQQQSPQHLTEQFFTGQRAAERKGTVSPYVLEQLKLQWFRQQQQQQPRQPQPAPRPLPHQQPQQQQPRPQQQQQQQQQQQQHRQQRHLHSQQQHRQQQHLQSQEPPPHQQQYHQPQHQQRPPQQPRHHQTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1277
The following BLAST results are available for this feature:
BLAST of EWM24188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105574|gb|EWM24188.1|0.000e+0100.00hypothetical protein Naga_100325g1, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6501rna6501Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications