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Properties
Property Name | Value |
Product | pentatricopeptide repeat-containing protein |
Orig transcript id | gnl|cribi|Naga_100020g20.5367.mrna |
Orig protein id | gnl|cribi|Naga_100020g20.5367 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002468.1 | supercontig | CM002468.1:546087..549694 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6457 ID=rna6457|Name=rna6457|organism=Nannochloropsis gaditana|type=mRNA|length=2828bp TCGCGAGGCTCGCCGAGAGCATAGAACTTGGCACGGGAGCGGTCTACTTC TATCCCCGTCTTGCAACACTCGTCCTGACTTTGAGTAAATCACAAATCAC AGGGCGCTCAGAGCAGATTGCTGCGTCTTCAACCTCAATAAGGGAAAGAA AAAGTGGAGAGTGACGGGAATTGACCCCAAAAAAACTTGCTTCTGGTTTC TACCCGCCTCAAACCTCCTTGAATTCAATTAGCCATGCCCCGAATGGAAC TTATGGGACGGCATTACCATATTGCCAGCGACGCGGTAACCGTGCCAGCT TTCTGTATGGCAGTGGGTAGGCTAGTGTGGTCGGCGGTGGTGCTAGGTCT TTTCTTGCACTTGCAGTACTTGTTGCAGTCCTGCTCGCGCCCCGGCATTG TCGATACTTTTGTTGGGCTCTCAATCACCCTCTTTCTAGCCACGGTGCTG GTGGAACTGGCAATTGTTGCAGTATCACAACGTGGTTCTATTGTGCATAC GCAGGCCCGGAAGGCCGTGGGTCCGCTGGTCGCATTGCATACTTGTCTCG GAGGTGTGCAGCTCGTGGTTGCCTTGGTAGGATTGGTCATCCTCTCCAAC CCCAAGGCATTGGTCATGTGCGACACCATAAGCCTTCAAAATCGCGTAGA TCTCATCGTGGCCCTCATAGTCATTTCACAGCTTGCGGATGTTTCCATGA AAGCTTGCTGCTGCGCGACCCTGGTGGGGGAGCCCGTCGGCGAGGAGGCC GAGCAGGCGGTGCACCACTTCGAGCAGCACGAGTCTCTGGCCTCCTATTC CGCTGCTGAGGATCGTTGGCGCGGTCGGTGTAGCTTTCTGTGCACGTGCT TGCGGTACACGACCTGCCACCTCTTTTCGAGCGCGGCGGGCGCGAGCGGG CCGGAGGGGGGCGACATCGGGGACATGGAGGTGGTGGCGCGCGTCATGGC GGACATCTTCCACTCCGAGGGCTTCCTGGACGTGCTGCCCTCCGACATCC TGGCCGGGTTCGTCCTGCTTCGACACGTACAGAAGGCGCAAGAGCACGAG ATGGTGTCGAGGCGCGGAACGGAGCTGTTGGAGGCGGAGGAGCGCTTCCT AAGAGAGCAACTGGAAGAGGGAGGGTCCGCCGCCGCCGCCGCCGCCGACG TCGCCTCCAGTACCTCTGATTCAAAGGGAATGGGGGCGTCTGGGACAAGC ACTGTGACGCCAGGGGTGCACCCGCGCGTTCGCTTCCAGTGCGGGCATTA CCTGGTGAAGCACGCTCTGTCTCGCGACGACCCCGGGGACCGGCAAGTGC TGGAGGAAGGCACGCACTTCGAGGCCTACGCCCTGGCTATGTACTCTTGG ATGATGTTCACCTACGCCAAGACGCCTTGCCTCGCACTTCCAGCGCTCAG CGCCCGAAGACTCTTCCGCATGCCCAAAGGTCCTCGCTCGCGCGTGCACG GGGACCTTGGGGCCGTCTTGGGGGACAACTGGCTCCGAGGTCACGAGGCA GGACTCTGGGAGTGGTTAAACGGGCGAGAGGGCTGTGAGTTGGCCTACGC GACATTTATCAACACGCTGTATGAGCGTCCGTACGGCATCTTTGTTGATC ACAAGTGGCAGTGCGTGGTGGTGGCCATCCGAGGCACCCTGTCCTTGGAA GACCTTCTCAACGATGCGCACGCGGAGCCCGGGCCCCTTGACGCGATGGG GAAAGCTTGGGGGTTTCCTGGAGATGGAGAGTACGGGCATGTTGGCATGG CCAACGCCGCTGACTGCATCGCGAAAGACCTGTGCAAGCACCGAATCCTA CAGCGGCTTATCCAGCGGGACCACGGCGACTCCCCTCCTGCCGGACCCCA CACGCCCTTGACCAAATCCAGTAAGGGATACAGCTTGCGCATAGTCGGCC ATTCCCTCGGGGCGGGTGCGGCGGTTTTTCTCTCCCTTATGCTTCGCCGC GACTTCCCGGACCTCCGCTGCCTCGCTTACTGCACCCCCGGGGGCCTCCT ATCTCCCGGCTTGGCCGAGTACACCAAGGCCTTCACGCTCACTTTCGTCC TGGGCCGTGACTTGGTTCCTCGACTTACCCTCGACGCCGTCCGCGGACTT CGCGATGACATCCTCCGTCTGCTTGCCCGGTGCCGTGCGAACAAGAACAC CGTGCTCCGGAGCATGATGGAGAAGGACTCGCGGGCAGCGGTCGACCGGC TCCTTTACTCGTCCCAGGACGTGCCGCCTTCCGAATTCTTGACGCAATTG CAGGCGTACGAAGAGCAGATGCGACGAGTGGATCGGCGTATGGTCCAAGT GCGGTTGATCCCCGCCGGGCGCATTGTTCACCTCGTCAAGTCTCACCGGG TGGAGCGTGAAAGGTGTGGGGGTCTCTTGGGGAGGTGGTACAAACAGTGC TACACGCCCGTGTGGGCGCTTCCGGAGGACCTGAGTGAGATCTACGTCTC GTCTACGATGGCGCTGGAGCACTTTCCGCACATCGTGCTGTACAATATGC AAGACGTGTGCGAGGAGTGGGGTATTCCCGTCAGCTAAGTGCGATGAATG CTAGCAGACCTTTCATCCGTGATTGCAGGAAAGGGACATGCTGGCACAGT GTACAGCTTCTTGTAGCGTATTATAAGTGACCCTCCGCTGGTCGCAGGTC CGCTGTTAAAAGTATCTGAGCCACACAAAGGACTGAGGGCAAAGTACGAT ATTGGAGGATTGGACTTTGCAAGCGAGGACACCACCCTAAACTCAAAGAA TCGACGTCTTCGTGTTTGATACTTGTCATTTGCTTATCTTTTAAAAAGCT CAAGCTTAATTTTACAAAAAAATTCGAC back to topprotein sequence of rna6457 >rna6457-protein ID=rna6457-protein|Name=rna6457|organism=Nannochloropsis gaditana|type=polypeptide|length=964bp METPPQTLPPSPPGNRHSPEPSRPQATSRIRRRSHSISGCGGAVIAEWWR LMLLSSSAATAAAAATAAFIGSGGATPTSVGGAVPTAWWVSTQQQQQLNR QSQLHNSWCAVSSTSRLATATGGWDSSAAPLRGRRGWDGMMGAPDKEEVL LRAASPVRGMSEKPQARWQGEGPDARDEEGQDRAGNAGSSWMEALRLEKG ALRRNHRFEVTIQKPLGIFMSEGEADVGAPTISEVRLGSNADKAGLRVGD RIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLAQDAGD DSIASRQVEVFEVELERPVPLEWMQENAEGGVFVRRVLKADCEALRRIQP YDRVVAVSASLGDRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEVARLI ARGAGNPGVGVADLVPPLPPRPSMAAASLLSPPSTADLVAKGEMLLMGEP RVHAVLSQMAGALRARDPDLAISIFKLAVERGLTPDAHCCSSLIKAYGMK KQADKALEVVRMMLELGVAPDLVTLNAAMDACEKGKRPEEVLRLFREEVP RHGLVPDIFSYTVLVNMYGKRGELAEALALFEEAVACGLEPELPAYTAII KAAVKKDDMGTALALLRRVFDSGLSPDARLYNTLLWGHTKRLEWSKAMQI LRLMEAKGLVPDRLTYSYLLSCLVDCNQLEVAQSLWREMRDKGHVKPNLE LYSLAVDMFAKAGDTTQAVTIFKEMRRNRVQPNLVTYTALMEAFVRAGYP MAALSISDEMRRKPGLARDVTSCVWRLKCFVELGDLEGIENLIQEMQDSG IHLNVVVYNQYLRGAMRSGRYELALQILSALFEKRLLPNLETHQCLLEMP TPSTGGAVSGLAHGDGVESQMEEAREQLVMFYHAALKLLAEQKVRARVNL YVACLHACLRTDRLDLAAEVMALRRANTLQIFQLFKKHEEKVHRWERKID RELDARFYSNKNLV back to topmRNA from alignment at CM002468.1:546087..549694- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6457 ID=rna6457|Name=rna6457|organism=Nannochloropsis gaditana|type=mRNA|length=3608bp|location=Sequence derived from alignment at CM002468.1:546087..549694- (Nannochloropsis gaditana) AACGGGGCTTTGTTTCTTCTCTCGTTGGCCACACACGCGTCCAGGAATAG
TTTGACGTTGAGTGGAAATCTTTCGTGGTGCGATGGTTTGTGTACTGCGT
TGTAACCCTAGAACTGTATCGACAGCGTCCGACACTCTCCGTGCATCAGC
ATTTGATACATGACTCAATGAGAAAACGTGTTCCCCATGTTTTTTCACGA
ACATTATCTATCTATGGCAGGTCCATTCAGGCAATTCCATTACGTTGTAT
ACACGAGCAACTGTGAGCATCTGGCGTAGGCAAGTGACCTTTAACGCTGA
CAACATCTGCTCCTCGCAGCCTGCATTTCCAAATGGAGACACCACCGCAG
ACACTACCACCATCACCTCCTGGAAATCGGCATTCTCCGGAGCCAAGCAG
GCCACAGGCTACGTCGAGGATAAGAAGGCGTTCACACAGTATAAGTGGCT
GTGGAGGGGCGGTAATAGCGGAGTGGTGGCGACTTATGCTGCTGTCCTCT
TCGGCAGCAACCGCGGCTGCAGCTGCCACGGCGGCCTTTATCGGAAGCGG
GGGTGCCACCCCAACTTCCGTGGGCGGCGCCGTACCCACAGCGTGGTGGG
TATCCACTCAACAGCAACAACAGCTTAATCGCCAGTCGCAACTTCACAAT
TCGTGGTGTGCCGTCTCCAGTACGTCTCGTCTCGCAACCGCAACGGGAGG
ATGGGACTCATCAGCTGCTCCCCTGAGGGGTCGACGCGGGTGGGACGGCA
TGATGGGGGCACCGGATAAAGAGGAGGTTTTATTGCGGGCAGCATCTCCT
GTCAGGGGTATGTCCGAGAAGCCGCAGGCTCGGTGGCAAGGTGAGGGGCC
TGATGCTAGGGATGAGGAGGGGCAAGACAGAGCGGGCAACGCGGGCTCGT
CGTGGATGGAGGCATTGAGGTTGGAGAAAGGCGCCCTACGGCGGAATCAT
CGCTTTGAGGTGACCATACAAAAACCGCTGGGAATTTTCATGTCGGAAGG
GGAGGCAGACGTGGGCGCCCCCACCATTTCGGAGGTACGGCTAGGTAGCA
ACGCGGATAAGGCTGGTCTGCGCGTCGGGGACCGAATAGTGGCAGCCTCT
GCCACAGTGGGAAACAAGCTGTGGACCAAAACGACGCTGGTGGGTGTAGA
ATCAGCCATCAACTCGCGTTTCCGCTTTTCCGACGACATCACCTTCTGCG
TGGAAAGGACCCTGGCGCAGGACGCGGGCGACGACAGTATCGCGAGTCGG
CAAGTCGAGGTGTTCGAGGTAGAGTTGGAGAGGCCGGTGCCGTTGGAGTG
GATGCAAGAGAATGCAGAAGGCGGCGTCTTTGTTCGACGTGTGCTGAAAG
CGGACTGCGAGGCCCTGCGGCGCATCCAGCCGTACGATCGAGTCGTCGCC
GTCTCGGCGTCCCTGGGAGACCGCATGTGGCGGACGAACTCTCTGGACGG
TGTCCTCTCGGCGCTCTGCACCCGCATCGGCAGCAAGGTTCGCTTGCAGT
TCGAGCGCAGCCCAGAGGTCGCTCGTCTGATCGCGCGTGGTGCCGGCAAC
CCTGGTGTTGGGGTAGCTGATCTGGTACCACCGCTCCCTCCTCGCCCCTC
TATGGCCGCTGCCTCCTTGCTCTCCCCGCCATCCACGGCTGACCTGGTAG
CGAAGGGGGAAATGCTGCTCATGGGGGAACCACGCGTGCACGCCGTCCTG
TCCCAGATGGCCGGAGCCCTCCGAGCGCGAGACCCGGACCTTGCGATCTC
GATCTTTAAGTTGGCCGTGGAGCGGGGACTGACCCCGGACGCCCACTGCT
GCTCGTCATTGATCAAGGCGTATGGGATGAAGAAGCAGGCTGACAAGGCG
CTGGAGGTGGTGAGAATGATGCTGGAACTGGGGGTAGCTCCCGATCTGGT
GACGCTGAACGCTGCCATGGACGCCTGTGAGAAGGGAAAGCGGCCCGAGG
AGGTTCTCAGGCTCTTTCGGGAGGAAGTGCCCAGGCATGGACTGGTGCCT
GACATCTTCAGCTACACGGTGCTGGTGAACATGTATGGGAAGCGAGGGGA
GCTGGCTGAGGCCTTGGCGCTGTTTGAAGAGGCGGTCGCCTGCGGTTTAG
AGCCCGAGCTCCCTGCCTACACCGCCATCATCAAGGCGGCAGTGAAAAAA
GACGACATGGGGACTGCACTTGCCCTGCTGCGACGCGTATTTGACAGCGG
CTTGAGCCCGGACGCGCGTCTGTACAACACCCTGCTATGGGGTCACACGA
AGCGCCTGGAGTGGTCCAAGGCGATGCAGATTTTGAGGCTCATGGAGGCG
AAGGGCTTGGTGCCCGACCGGCTGACCTACAGCTACCTGCTCTCCTGTCT
CGTCGACTGCAACCAATTGGAGGTGGCACAATCTTTGTGGCGCGAGATGC
GGGACAAGGGCCACGTCAAGCCGAACCTGGAGTTGTACAGCCTGGCTGTC
GACATGTTCGCCAAAGCCGGAGATACTACTCAAGCCGTGACCATCTTCAA
AGAAATGCGCCGCAACCGTGTGCAGCCAAATCTTGTCACGTACACCGCCC
TCATGGAAGCCTTTGTCCGCGCAGGCTACCCCATGGCCGCTCTGTCCATC
TCCGACGAGATGCGGCGGAAGCCCGGCCTGGCCCGTGATGTGACGAGCTG
CGTATGGCGTCTCAAATGCTTCGTGGAACTAGGGGATCTGGAGGGAATCG
AAAACTTGATCCAGGAAATGCAAGACAGTGGCATTCATCTAAATGTGGTC
GTCTACAATCAATATCTGCGAGGCGCGATGCGAAGCGGGCGGTATGAGCT
TGCTCTGCAAATACTTTCCGCCCTATTTGAGAAGAGGCTCCTTCCAAACC
TGGAGACTCATCAATGCCTGCTCGAAATGCCCACTCCGAGTACCGGAGGA
GCAGTCAGCGGTCTCGCCCACGGTGATGGTGTCGAAAGTCAGATGGAGGA
GGCACGGGAGCAACTTGTCATGTTTTACCATGCGGCCTTGAAATTACTCG
CGGAACAGAAAGTTCGGGCTCGGGTTAACCTTTACGTGGCGTGTCTGCAT
GCCTGTTTGCGTACTGATCGACTTGATCTGGCAGCTGAAGTGATGGCATT
GCGGCGGGCCAACACTTTGCAGATCTTTCAGCTGTTCAAAAAGCACGAGG
AGAAGGTCCACAGGTGGGAACGGAAAATCGACCGGGAGCTGGACGCCCGG
TTTTATTCAAATAAGAACCTGGTGTAAAACATTGAGATTTCTCTTCTGGA
GGAAATTCTTTGGAGGAAATTCTTTCAGAGACATTTGAAAAAGAGAAGAC
ATGCAAGTGAATGAGGCTTGAAATTTAGGGAGTAAAGAAACCGACGATGA
AAAGCATTAATGCACGCTGTGGGGTCGAAGGAGGTAAGATTATCTGCAGG
GTCCAATAATTTGCTAGAAAGCTGCAGCGCAACCGCTGCAGGCCAACCGA
GACCACTTTCGATTCCATGTATGTTTGTTGGTGGTCGAGATGGTTCGTTA
TGCGACACGTGGCGAGAAGAAAGCTGCATGCTATAGATTAGGTCGAATTT
TTTTGTAAAATTAAGCTTGAGCTTTTTAAAAGATAAGCAAATGACAAGTA
TCAAACAC back to topCoding sequence (CDS) from alignment at CM002468.1:546087..549694- >rna6457 ID=rna6457|Name=rna6457|organism=Nannochloropsis gaditana|type=CDS|length=2895bp|location=Sequence derived from alignment at CM002468.1:546087..549694- (Nannochloropsis gaditana) ATGGAGACACCACCGCAGACACTACCACCATCACCTCCTGGAAATCGGCA TTCTCCGGAGCCAAGCAGGCCACAGGCTACGTCGAGGATAAGAAGGCGTT CACACAGTATAAGTGGCTGTGGAGGGGCGGTAATAGCGGAGTGGTGGCGA CTTATGCTGCTGTCCTCTTCGGCAGCAACCGCGGCTGCAGCTGCCACGGC GGCCTTTATCGGAAGCGGGGGTGCCACCCCAACTTCCGTGGGCGGCGCCG TACCCACAGCGTGGTGGGTATCCACTCAACAGCAACAACAGCTTAATCGC CAGTCGCAACTTCACAATTCGTGGTGTGCCGTCTCCAGTACGTCTCGTCT CGCAACCGCAACGGGAGGATGGGACTCATCAGCTGCTCCCCTGAGGGGTC GACGCGGGTGGGACGGCATGATGGGGGCACCGGATAAAGAGGAGGTTTTA TTGCGGGCAGCATCTCCTGTCAGGGGTATGTCCGAGAAGCCGCAGGCTCG GTGGCAAGGTGAGGGGCCTGATGCTAGGGATGAGGAGGGGCAAGACAGAG CGGGCAACGCGGGCTCGTCGTGGATGGAGGCATTGAGGTTGGAGAAAGGC GCCCTACGGCGGAATCATCGCTTTGAGGTGACCATACAAAAACCGCTGGG AATTTTCATGTCGGAAGGGGAGGCAGACGTGGGCGCCCCCACCATTTCGG AGGTACGGCTAGGTAGCAACGCGGATAAGGCTGGTCTGCGCGTCGGGGAC CGAATAGTGGCAGCCTCTGCCACAGTGGGAAACAAGCTGTGGACCAAAAC GACGCTGGTGGGTGTAGAATCAGCCATCAACTCGCGTTTCCGCTTTTCCG ACGACATCACCTTCTGCGTGGAAAGGACCCTGGCGCAGGACGCGGGCGAC GACAGTATCGCGAGTCGGCAAGTCGAGGTGTTCGAGGTAGAGTTGGAGAG GCCGGTGCCGTTGGAGTGGATGCAAGAGAATGCAGAAGGCGGCGTCTTTG TTCGACGTGTGCTGAAAGCGGACTGCGAGGCCCTGCGGCGCATCCAGCCG TACGATCGAGTCGTCGCCGTCTCGGCGTCCCTGGGAGACCGCATGTGGCG GACGAACTCTCTGGACGGTGTCCTCTCGGCGCTCTGCACCCGCATCGGCA GCAAGGTTCGCTTGCAGTTCGAGCGCAGCCCAGAGGTCGCTCGTCTGATC GCGCGTGGTGCCGGCAACCCTGGTGTTGGGGTAGCTGATCTGGTACCACC GCTCCCTCCTCGCCCCTCTATGGCCGCTGCCTCCTTGCTCTCCCCGCCAT CCACGGCTGACCTGGTAGCGAAGGGGGAAATGCTGCTCATGGGGGAACCA CGCGTGCACGCCGTCCTGTCCCAGATGGCCGGAGCCCTCCGAGCGCGAGA CCCGGACCTTGCGATCTCGATCTTTAAGTTGGCCGTGGAGCGGGGACTGA CCCCGGACGCCCACTGCTGCTCGTCATTGATCAAGGCGTATGGGATGAAG AAGCAGGCTGACAAGGCGCTGGAGGTGGTGAGAATGATGCTGGAACTGGG GGTAGCTCCCGATCTGGTGACGCTGAACGCTGCCATGGACGCCTGTGAGA AGGGAAAGCGGCCCGAGGAGGTTCTCAGGCTCTTTCGGGAGGAAGTGCCC AGGCATGGACTGGTGCCTGACATCTTCAGCTACACGGTGCTGGTGAACAT GTATGGGAAGCGAGGGGAGCTGGCTGAGGCCTTGGCGCTGTTTGAAGAGG CGGTCGCCTGCGGTTTAGAGCCCGAGCTCCCTGCCTACACCGCCATCATC AAGGCGGCAGTGAAAAAAGACGACATGGGGACTGCACTTGCCCTGCTGCG ACGCGTATTTGACAGCGGCTTGAGCCCGGACGCGCGTCTGTACAACACCC TGCTATGGGGTCACACGAAGCGCCTGGAGTGGTCCAAGGCGATGCAGATT TTGAGGCTCATGGAGGCGAAGGGCTTGGTGCCCGACCGGCTGACCTACAG CTACCTGCTCTCCTGTCTCGTCGACTGCAACCAATTGGAGGTGGCACAAT CTTTGTGGCGCGAGATGCGGGACAAGGGCCACGTCAAGCCGAACCTGGAG TTGTACAGCCTGGCTGTCGACATGTTCGCCAAAGCCGGAGATACTACTCA AGCCGTGACCATCTTCAAAGAAATGCGCCGCAACCGTGTGCAGCCAAATC TTGTCACGTACACCGCCCTCATGGAAGCCTTTGTCCGCGCAGGCTACCCC ATGGCCGCTCTGTCCATCTCCGACGAGATGCGGCGGAAGCCCGGCCTGGC CCGTGATGTGACGAGCTGCGTATGGCGTCTCAAATGCTTCGTGGAACTAG GGGATCTGGAGGGAATCGAAAACTTGATCCAGGAAATGCAAGACAGTGGC ATTCATCTAAATGTGGTCGTCTACAATCAATATCTGCGAGGCGCGATGCG AAGCGGGCGGTATGAGCTTGCTCTGCAAATACTTTCCGCCCTATTTGAGA AGAGGCTCCTTCCAAACCTGGAGACTCATCAATGCCTGCTCGAAATGCCC ACTCCGAGTACCGGAGGAGCAGTCAGCGGTCTCGCCCACGGTGATGGTGT CGAAAGTCAGATGGAGGAGGCACGGGAGCAACTTGTCATGTTTTACCATG CGGCCTTGAAATTACTCGCGGAACAGAAAGTTCGGGCTCGGGTTAACCTT TACGTGGCGTGTCTGCATGCCTGTTTGCGTACTGATCGACTTGATCTGGC AGCTGAAGTGATGGCATTGCGGCGGGCCAACACTTTGCAGATCTTTCAGC TGTTCAAAAAGCACGAGGAGAAGGTCCACAGGTGGGAACGGAAAATCGAC CGGGAGCTGGACGCCCGGTTTTATTCAAATAAGAACCTGGTGTAA back to top
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