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Properties
| Property Name | Value |
|---|
| Product | dna-directed rna polymerase ii 19 kda polypeptide |
| Orig transcript id | gnl|cribi|Naga_100020g41.5409.mrna |
| Orig protein id | gnl|cribi|Naga_100020g41.5409 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:512523..514365 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6438 ID=rna6438|Name=rna6438|organism=Nannochloropsis gaditana|type=mRNA|length=1340bp
TTTGCCGCCCGCGACAACGAGGCCCGTGTTTCTCCTTTCCACAACACAGT
GGGAGGAGGCATATGAAAAAAGGCCATTACGTGGCCTAACGCAAAAAATA
TAAGGAGAAAATGCCACGTTTTCATCGAGAGGGTCATTTGACGACAAGTC
TTCAGGTGATCGGCGTCGGAGCATAAGCCGCGCGTCTGTCCACTAGCCTG
TAGAACATGGTTATGGACAAGAGATGCGTCAAAATTTGTCCAGATTCCTC
AAATATCACCTCAATTATCTCATAAACGGAAATCTAAGAACACACTCATT
TCTTTTGGTTGTTTCTCTATGCGTGTTTCATCAAGCCGCACGTCTAAGCG
CTGGTGGGACGCATTTCTCCCCCTGAAGCTCTCCTTGCTGCCTCCTCGCC
TTCCGTAACAGCGACATTCCATATCGCACAAACCATCCAACACGACCTCA
CCAACTTCACCAGCTAGGCCGTAATTCTATCCTCATCACCATAGGTAGGG
TCATTTTTATTTTATTTTTTTCCAGGCAGGAAGGGACGGATCAGGAAGTG
CTCCATTGTCGTCTGGTACAAGGCTGGGAACTGGCTTCGTGTCATTGAAC
ACTCCCACCGCCAGCTTGTCCCTCCATTCCGCCAATACCATGTTTTACCT
GAAAACACTGGAGAAAGACTTCATGCTGGAGCCGAAAGACCTGGGCCCGG
GTCTCAAGGAAACCATCAAGCGGCGCCTCACTCAAATGATGGAGGGCACG
TTGGAGCCAGATCTCGGCTTCGTGATAGCCTTGGTGGCCCTGGATGATCA
GCACATTCGGCCAGGAAAGATAGAGTACGAGACTGGAGAAGTGGAGGTGT
GGGTAAAGTTTACCGTCATGCTCTTCCGACCCTTTCGGAACGAGATCTTA
GACGCCCAAGTGACCACAGTGACGGACATGGGCTTCTTCGCGGACGCAGG
ACCGGTGCAGGGAATATACGTAAACAAGCATCAGATGCCTCAGGATTACG
GCTTCGATGCACAGGACAATGTTTGGCGCACATCTGACATGGAAGTGGAG
ATCAGGCCGGGCTGCGGGGTGCGGATGCGGGTAGTCGGCGTGGACATCAC
GCCCGGGAGGATGAACGTCGTGGGCTCTATCATGGATGATTACACCGGCC
TTATTAGCGGGGAGACAGACTAGGCAGGTTCTTCAAGACACAACAAAGCA
TGCATCTTCACATTCTTATTGAACGTGGAATCAAGACACGCTCAGTGTCA
CTTTATATTATGTATACTAAAAAGGAGGTCAATCATGCACGCCCTTTAAA
GCCGAAAGAAGATAAAAGACGATTACGATAACCCTAACCC back to topprotein sequence of rna6438 >rna6438-protein ID=rna6438-protein|Name=rna6438|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MMEGTLEPDLGFVIALVALDDQHIRPGKIEYETGEVEVWVKFTVMLFRPF
RNEILDAQVTTVTDMGFFADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTS
DMEVEIRPGCGVRMRVVGVDITPGRMNVVGSIMDDYTGLISGETD back to topmRNA from alignment at CM002468.1:512523..514365- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6438 ID=rna6438|Name=rna6438|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002468.1:512523..514365- (Nannochloropsis gaditana)
TTTGCCGCCCGCGACAACGAGGCCCGTGTTTCTCCTTTCCACAACACAGT
GGGAGGAGGCATATGAAAAAAGGCCATTACGTGGCCTAACGCAAAAAATA
TAAGGAGAAAATGCCACGTTTTCATCGAGAGGGTCATTTGACGACAAGTC
TTCAGGTGATCGGCGTCGGAGCATAAGCCGCGCGTCTGTCCACTAGCCTG
TAGAACATGGTTATGGACAAGAGATGCGTCAAAATTTGTCCAGATTCCTC
AAATATCACCTCAATTATCTCATAAACGGAAATCTAAGAACACACTCATT
TCTTTTGGTTGTTTCTCTATGCGTGTTTCATCAAGCCGCACGTCTAAGCG
CTGGTGGGACGCATTTCTCCCCCTGAAGCTCTCCTTGCTGCCTCCTCGCC
TTCCGTAACAGCGACATTCCATATCGCACAAACCATCCAACACGACCTCA
CCAACTTCACCAGCTAGGCCGTAATTCTATCCTCATCACCATAGGTAGGG
TCATTTTTATTTTATTTTTTTCCAGGCAGGAAGGGACGGATCAGGAAGTG
CTCCATTGTCGTCTGGTACAAGGCTGGGAACTGGCTTCGTGTCATTGAAC
ACTCCCACCGCCAGCTTGTCCCTCCATTCCGCCAATACCATGTTTTACCT
GGTAAGGATCTTCACCTTGTTTCTCTTACTGAATCGGGGCGCCACCATTA
ATCTCCCATCTCACCAACCTCTGTACAGAAAACACTGGAGAAAGACTTCA
TGCTGGAGCCGAAAGACCTGGGCCCGGGTCTCAAGGAAACCATCAAGTAC
GTACAGGACTCAATACCTACGCCTTAAAGCAGGAACAGTTCACCCTGGGC
TCGTATTCGGACGTGTGCGAGTAAACGGAGATAAAAGGGCTGGCCATAGG
CATTGGGATGCGGCTGGTCTTCGTCACTAGCTGTGCATCTGTCGGGACGA
GCAATTATTTTCTTCCCGCAAGCTGTCAGCCACGGCGTCAGAACTATCGG
ACCTTGCTTTATGCTCTTGAAAATGCCTGACATTTCATTCTACCCAACCC
AGGCGGCGCCTCACTCAAATGATGGAGGGCACGTTGGAGCCAGATCTCGG
CTTCGTGATAGCCTTGGTGGCCCTGGATGATCAGCACATTCGGCCAGGAA
AGATAGAGTACGAGACTGGAGAAGTGGAGGTGTGGGTAAAGTTTACCGTC
ATGCTCTTCCGACCCTTTCGGAACGAGATCTTAGACGCCCAAGTGACCAC
AGTGACGGACATGGGCTTCTTCGCGGACGCAGGACCGGTGCAGGGAATAT
ACGTAAACAAGCATCAGATGCCTCAGGATTACGGCTTCGATGCACAGGAC
AATGTTTGGCGCACATCTGACATGGAAGTGGAGATCAGGCCGGGCTGCGG
GGTGCGGATGCGGGTAGTCGGCGTGGACATCACGCCCGGGAGGATGGTAC
GTGGTGGGCGGCTGGACGTGGTCGCGTCCGTCTCGCTCGAATATGGATTA
TAATGCACATTTGGCAGTTGAAAAGGAGCAATTTAGCGCGTATAGATGCC
GTGTCCTTGGCAACCTCATCACCTTAAATCTAATACACATAACGCCTACC
TGCCCTCATACTTCAGAACGTCGTGGGCTCTATCATGGATGATTACACCG
GCCTTATTAGCGGGGAGACAGACTAGGCAGGTTCTTCAAGACACAACAAA
GCATGCATCTTCACATTCTTATTGAACGTGGAATCAAGACACGCTCAGTG
TCACTTTATATTATGTATACTAAAAAGGAGGTCAATCATGCACGCCCTTT
AAAGCCGAAAGAAGATAAAAGACGATTACGATAACCCTAACCC back to topCoding sequence (CDS) from alignment at CM002468.1:512523..514365- >rna6438 ID=rna6438|Name=rna6438|organism=Nannochloropsis gaditana|type=CDS|length=876bp|location=Sequence derived from alignment at CM002468.1:512523..514365- (Nannochloropsis gaditana)
AACGTCGTGGGCTCTATCATGGATGATTACACCGGCCTTATTAGCGGGGA
GACAGACTAGATGATGGAGGGCACGTTGGAGCCAGATCTCGGCTTCGTGA
TAGCCTTGGTGGCCCTGGATGATCAGCACATTCGGCCAGGAAAGATAGAG
TACGAGACTGGAGAAGTGGAGGTGTGGGTAAAGTTTACCGTCATGCTCTT
CCGACCCTTTCGGAACGAGATCTTAGACGCCCAAGTGACCACAGTGACGG
ACATGGGCTTCTTCGCGGACGCAGGACCGGTGCAGGGAATATACGTAAAC
AAGCATCAGATGCCTCAGGATTACGGCTTCGATGCACAGGACAATGTTTG
GCGCACATCTGACATGGAAGTGGAGATCAGGCCGGGCTGCGGGGTGCGGA
TGCGGGTAGTCGGCGTGGACATCACGCCCGGGAGGATGAACGTCGTGGGC
TCTATCATGGATGATTACACCGGCCTTATTAGCGGGGAGACAGACTAGAT
GATGGAGGGCACGTTGGAGCCAGATCTCGGCTTCGTGATAGCCTTGGTGG
CCCTGGATGATCAGCACATTCGGCCAGGAAAGATAGAGTACGAGACTGGA
GAAGTGGAGGTGTGGGTAAAGTTTACCGTCATGCTCTTCCGACCCTTTCG
GAACGAGATCTTAGACGCCCAAGTGACCACAGTGACGGACATGGGCTTCT
TCGCGGACGCAGGACCGGTGCAGGGAATATACGTAAACAAGCATCAGATG
CCTCAGGATTACGGCTTCGATGCACAGGACAATGTTTGGCGCACATCTGA
CATGGAAGTGGAGATCAGGCCGGGCTGCGGGGTGCGGATGCGGGTAGTCG
GCGTGGACATCACGCCCGGGAGGATG back to top
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