rna6437, rna6437 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6437
Unique Name	rna6437
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2376
Alignment location	CM002468.1:512523..514365 -

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Properties


Property Name	Value
Product	dna-directed rna polymerase ii 19 kda polypeptide
Orig transcript id	gnl\|cribi\|Naga_100020g41.5408.mrna
Orig protein id	gnl\|cribi\|Naga_100020g41.5408
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:512523..514365 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g41	gene6220	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6437	rna6437-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24275.1	cds6421	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:512523..514365-
coding sequence from alignment at CM002468.1:512523..514365-

mRNA sequence

>rna6437 ID=rna6437|Name=rna6437|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp
AATGCAGGCCGTATAATCTAGAGTTTATAAATTTTCAATCCCATACGCGA
AAGGACAGGGTCTGTCGCCTGAGCATACGTAGAAAAGCATGCCGCCAGAA
CGAGACTCCTTCGTGATGGTCCGACTCCTAGTCGACGCGCAATTGGAATA
ATATGTGGCGACGAGCTCGAGATGCTGACGGGAAGAACGGCGTAGCGGTG
GACCGTCGGACTTGTAATAATATATCTATGCGTCACGAAAAACATGAACC
CTCAGCTGCAGAGGAAAGGGCAGAGGAAGAGGTCTTGCTGGCGCTGCGGA
TGATGTGCCAGTCCGGTCTGCGGCACCCGTTGCACGGGCATTCGTACGCA
CGCTATCGAGCTCTGCGGCCGCGCGTCTGTTTTTCTTGCGAGGCTCCTGT
ATTTGGACCCTTCTCTGTTGCCTGTCACTGCCTCTTATGTGGCATCATTG
TGCACCGACAGTGCGTCATGCGCATTACTAAGGTGCCGTGCGGAAACTAC
CGTGGTCTCCACGACCCTAGTGGCCTCCTCAGTAGCATTGCCACCCCCAG
AGAATATGTACACATGGCAAGCACGGAGACAGGTCCCCATGAGACAGCAG
TAGCGGATGAGAAGAAGGCTGATAAGAGGGAGTCAAGTGTTTCGCAAACA
CACGGTCGCGCAGAAGAACCGACGGAGGAGAAGCAGGCACGACGAGAGCG
TTTCCAAAAGGATCAATCCACTGCTCGTGATGGACGTTCTGTGATCGAAG
ACAAGGAAGAGGGAAGAGCAGAGCGGATAGAGATCGGGGACGGGCCTGAG
CCTGGGGTTGGAAGAGGGACGAGTAGCTCGGTCGAAACCGGTTTGGTCAA
AGTCAATGCCGGTGCGCGTGGCATCACTTACGACGCCCTCGTGCAGGTGG
GAAAATTGATGGGAAACATGATCGGTGGTGATGCCAACGAGGTCGGAGCG
CGGGCAGCTGTCGCAAGCCTTCTAAAGATCTCGACGCCCGAGGGAGGGTC
CTCGGGGGGGAAGGGCGCGAGCTGCCAGGAAGAGGATGGGGCCGGAGGGC
AGAGGTACTGGGGTGAAAGATGGTCGAAGACTTTGAGCGGGAGCGTGGAT
ATGGCAGTCCCGCCACCACCTGTGGCCATGGCGTGGTCCCACCTGGCGCA
ACGGTGGAAGAGGTCCGTGAGCTGCCGAGAACCGCCGATGAGCCTGGCCG
CCTTCCTGGAGCTAGGAAACGAAGAAAACACAAAAGAGCGCTGTCAAGGT
CCTCATGGGAAGGGAATGGTAGAAAGGAAGCGCGTGTCGTGTCTTATAGA
ACAGATTTTGCGCTGTCCCGAGACGCCCCCGGGGGGGCTATGGGCCGCCT
GTCTTGATCAATTTGTTGCGCGGCATGCGGCCACGGCGCCCGCAGGCTCG
GATGGTTTTCGGGGCTGTAATTCTTCATCCGTTGATGCGTCGCGCAGTGG
CAGGGAATGGGAGGGAGCCGACATGCCGGTGGCGGGTGTGGCTACAGGAT
CCTGCTCCCAGGACGCGGCCGCCATCATCCAGGAGGTGTCGCTCACACTG
ATGGAGTACGTGCCCGGACTCCTGGGTCCGTCTATGGAAGCCTGCGAGGA
CGCCTTTGTGGCCGTGGAGACGGAGATAATGACCACGCTCTACCCCTCCG
TGCTGGGAGAGTGCCAGGAGCAGGCCCGGTCTCGGAGCAGCGCCCTCGAA
GGCTGGTACCTGCGGGAGCCAGACGCGCGGGAGGAGCGAGGAATGGATGG
TGCGGGGGCCCAAAATGAGGATCCGTTCCACCGGGCGGTTCAGGAGCTCG
TGGGGATGAGCCAGGAGGTGACAGGCCGTAAGAAGGTTGCGCGAGTGCTG
CAGAGCTGTTTGGCTCTGGGAGAGGGGCGCGTGGTCACGAGCGCGGATGA
TCTCCTACCGGCCTTGGCGGGTGTTGTGCGGTCGGCGCGGATACCTGCCT
TGCCCGCCCATTTGGCCTTCATCGACCAGACCTGCGACACTGGGGCTCTG
CTCGGCGCCGAGGGCTATGCCTTGACGTCGCTGCAGGTCGTTGTCAGCCT
CATCGTCACGCCGCCAGGCGAGATGTCGGGGACAATGTCGGACGACGAAT
TCGACTAGGGGTGGATAAGAAAGAGTAGAAAACAGATCCTTGCTCAGGGT
GCTTCACACCGCTACAAAGTTTCTCTAGCGATGCACCTCTTGTATGAAAC
GTAATATTTTGTAGTTTTTTCAACCTGCTGTGAAATAGAGTCTGTAGACA
ACACTTTGAAATCAAAGTAAACCACCCATTCATTTGAGCGTGTCGGGCAA
CCTGCGGCTTGGGGCTTAATTGATACTTTTCTTCTGTGCACGAGACAGAG
ATTTGAAACCTCTTGAGGGAATTCCT

protein sequence of rna6437

>rna6437-protein ID=rna6437-protein|Name=rna6437|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MFYLKTLEKDFMLEPKDLGPGLKETIKRRLTQMMEGTLEPDLGFVIALVA
LDDQHIRPGKIEYETGEVEVWVKFTVMLFRPFRNEILDAQVTTVTDMGFF
ADAGPVQGIYVNKHQMPQDYGFDAQDNVWRTSDMEVEIRPGCGVRMRVVG
VDITPGRMNVVGSIMDDYTGLISGETD

mRNA from alignment at CM002468.1:512523..514365-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6437 ID=rna6437|Name=rna6437|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp|location=Sequence derived from alignment at CM002468.1:512523..514365- (Nannochloropsis gaditana)
TTTGCCGCCCGCGACAACGAGGCCCGTGTTTCTCCTTTCCACAACACAGT
GGGAGGAGGCATATGAAAAAAGGCCATTACGTGGCCTAACGCAAAAAATA
TAAGGAGAAAATGCCACGTTTTCATCGAGAGGGTCATTTGACGACAAGTC
TTCAGGTGATCGGCGTCGGAGCATAAGCCGCGCGTCTGTCCACTAGCCTG
TAGAACATGGTTATGGACAAGAGATGCGTCAAAATTTGTCCAGATTCCTC
AAATATCACCTCAATTATCTCATAAACGGAAATCTAAGAACACACTCATT
TCTTTTGGTTGTTTCTCTATGCGTGTTTCATCAAGCCGCACGTCTAAGCG
CTGGTGGGACGCATTTCTCCCCCTGAAGCTCTCCTTGCTGCCTCCTCGCC
TTCCGTAACAGCGACATTCCATATCGCACAAACCATCCAACACGACCTCA
CCAACTTCACCAGCTAGGCCGTAATTCTATCCTCATCACCATAGGTAGGG
TCATTTTTATTTTATTTTTTTCCAGGCAGGAAGGGACGGATCAGGAAGTG
CTCCATTGTCGTCTGGTACAAGGCTGGGAACTGGCTTCGTGTCATTGAAC
ACTCCCACCGCCAGCTTGTCCCTCCATTCCGCCAATACCATGTTTTACCT
GGTAAGGATCTTCACCTTGTTTCTCTTACTGAATCGGGGCGCCACCATTA
ATCTCCCATCTCACCAACCTCTGTACAGAAAACACTGGAGAAAGACTTCA
TGCTGGAGCCGAAAGACCTGGGCCCGGGTCTCAAGGAAACCATCAAGTAC
GTACAGGACTCAATACCTACGCCTTAAAGCAGGAACAGTTCACCCTGGGC
TCGTATTCGGACGTGTGCGAGTAAACGGAGATAAAAGGGCTGGCCATAGG
CATTGGGATGCGGCTGGTCTTCGTCACTAGCTGTGCATCTGTCGGGACGA
GCAATTATTTTCTTCCCGCAAGCTGTCAGCCACGGCGTCAGAACTATCGG
ACCTTGCTTTATGCTCTTGAAAATGCCTGACATTTCATTCTACCCAACCC
AGGCGGCGCCTCACTCAAATGATGGAGGGCACGTTGGAGCCAGATCTCGG
CTTCGTGATAGCCTTGGTGGCCCTGGATGATCAGCACATTCGGCCAGGAA
AGATAGAGTACGAGACTGGAGAAGTGGAGGTGTGGGTAAAGTTTACCGTC
ATGCTCTTCCGACCCTTTCGGAACGAGATCTTAGACGCCCAAGTGACCAC
AGTGACGGACATGGGCTTCTTCGCGGACGCAGGACCGGTGCAGGGAATAT
ACGTAAACAAGCATCAGATGCCTCAGGATTACGGCTTCGATGCACAGGAC
AATGTTTGGCGCACATCTGACATGGAAGTGGAGATCAGGCCGGGCTGCGG
GGTGCGGATGCGGGTAGTCGGCGTGGACATCACGCCCGGGAGGATGGTAC
GTGGTGGGCGGCTGGACGTGGTCGCGTCCGTCTCGCTCGAATATGGATTA
TAATGCACATTTGGCAGTTGAAAAGGAGCAATTTAGCGCGTATAGATGCC
GTGTCCTTGGCAACCTCATCACCTTAAATCTAATACACATAACGCCTACC
TGCCCTCATACTTCAGAACGTCGTGGGCTCTATCATGGATGATTACACCG
GCCTTATTAGCGGGGAGACAGACTAGGCAGGTTCTTCAAGACACAACAAA
GCATGCATCTTCACATTCTTATTGAACGTGGAATCAAGACACGCTCAGTG
TCACTTTATATTATGTATACTAAAAAGGAGGTCAATCATGCACGCCCTTT
AAAGCCGAAAGAAGATAAAAGACGATTACGATAACCCTAACCC

Coding sequence (CDS) from alignment at CM002468.1:512523..514365-

>rna6437 ID=rna6437|Name=rna6437|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002468.1:512523..514365- (Nannochloropsis gaditana)
AACGTCGTGGGCTCTATCATGGATGATTACACCGGCCTTATTAGCGGGGA
GACAGACTAGGCGGCGCCTCACTCAAATGATGGAGGGCACGTTGGAGCCA
GATCTCGGCTTCGTGATAGCCTTGGTGGCCCTGGATGATCAGCACATTCG
GCCAGGAAAGATAGAGTACGAGACTGGAGAAGTGGAGGTGTGGGTAAAGT
TTACCGTCATGCTCTTCCGACCCTTTCGGAACGAGATCTTAGACGCCCAA
GTGACCACAGTGACGGACATGGGCTTCTTCGCGGACGCAGGACCGGTGCA
GGGAATATACGTAAACAAGCATCAGATGCCTCAGGATTACGGCTTCGATG
CACAGGACAATGTTTGGCGCACATCTGACATGGAAGTGGAGATCAGGCCG
GGCTGCGGGGTGCGGATGCGGGTAGTCGGCGTGGACATCACGCCCGGGAG
GATGAAAACACTGGAGAAAGACTTCATGCTGGAGCCGAAAGACCTGGGCC
CGGGTCTCAAGGAAACCATCAAATGTTTTACCTGAACGTCGTGGGCTCTA
TCATGGATGATTACACCGGCCTTATTAGCGGGGAGACAGACTAGGCGGCG
CCTCACTCAAATGATGGAGGGCACGTTGGAGCCAGATCTCGGCTTCGTGA
TAGCCTTGGTGGCCCTGGATGATCAGCACATTCGGCCAGGAAAGATAGAG
TACGAGACTGGAGAAGTGGAGGTGTGGGTAAAGTTTACCGTCATGCTCTT
CCGACCCTTTCGGAACGAGATCTTAGACGCCCAAGTGACCACAGTGACGG
ACATGGGCTTCTTCGCGGACGCAGGACCGGTGCAGGGAATATACGTAAAC
AAGCATCAGATGCCTCAGGATTACGGCTTCGATGCACAGGACAATGTTTG
GCGCACATCTGACATGGAAGTGGAGATCAGGCCGGGCTGCGGGGTGCGGA
TGCGGGTAGTCGGCGTGGACATCACGCCCGGGAGGATGAAAACACTGGAG
AAAGACTTCATGCTGGAGCCGAAAGACCTGGGCCCGGGTCTCAAGGAAAC
CATCAAATGTTTTACCTGAACGTCGTGGGCTCTATCATGGATGATTACAC
CGGCCTTATTAGCGGGGAGACAGACTAGGCGGCGCCTCACTCAAATGATG
GAGGGCACGTTGGAGCCAGATCTCGGCTTCGTGATAGCCTTGGTGGCCCT
GGATGATCAGCACATTCGGCCAGGAAAGATAGAGTACGAGACTGGAGAAG
TGGAGGTGTGGGTAAAGTTTACCGTCATGCTCTTCCGACCCTTTCGGAAC
GAGATCTTAGACGCCCAAGTGACCACAGTGACGGACATGGGCTTCTTCGC
GGACGCAGGACCGGTGCAGGGAATATACGTAAACAAGCATCAGATGCCTC
AGGATTACGGCTTCGATGCACAGGACAATGTTTGGCGCACATCTGACATG
GAAGTGGAGATCAGGCCGGGCTGCGGGGTGCGGATGCGGGTAGTCGGCGT
GGACATCACGCCCGGGAGGATGAAAACACTGGAGAAAGACTTCATGCTGG
AGCCGAAAGACCTGGGCCCGGGTCTCAAGGAAACCATCAAATGTTTTACC
TGAACGTCGTGGGCTCTATCATGGATGATTACACCGGCCTTATTAGCGGG
GAGACAGACTAGGCGGCGCCTCACTCAAATGATGGAGGGCACGTTGGAGC
CAGATCTCGGCTTCGTGATAGCCTTGGTGGCCCTGGATGATCAGCACATT
CGGCCAGGAAAGATAGAGTACGAGACTGGAGAAGTGGAGGTGTGGGTAAA
GTTTACCGTCATGCTCTTCCGACCCTTTCGGAACGAGATCTTAGACGCCC
AAGTGACCACAGTGACGGACATGGGCTTCTTCGCGGACGCAGGACCGGTG
CAGGGAATATACGTAAACAAGCATCAGATGCCTCAGGATTACGGCTTCGA
TGCACAGGACAATGTTTGGCGCACATCTGACATGGAAGTGGAGATCAGGC
CGGGCTGCGGGGTGCGGATGCGGGTAGTCGGCGTGGACATCACGCCCGGG
AGGATGAAAACACTGGAGAAAGACTTCATGCTGGAGCCGAAAGACCTGGG
CCCGGGTCTCAAGGAAACCATCAAATGTTTTACCTG

Synonyms

Publications