rna6384, rna6384 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6384
Unique Name	rna6384
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2863
Alignment location	CM002468.1:396357..398358 +

Link to JBrowse

Properties


Property Name	Value
Product	exodeoxyribonuclease iii
Orig transcript id	gnl\|cribi\|Naga_100047g27.6078.mrna
Orig protein id	gnl\|cribi\|Naga_100047g27.6078
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:396357..398358 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g27	gene6168	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6384	rna6384-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24315.1	cds6369	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:396357..398358+
coding sequence from alignment at CM002468.1:396357..398358+

mRNA sequence

>rna6384 ID=rna6384|Name=rna6384|organism=Nannochloropsis gaditana|type=mRNA|length=2863bp
TTTGAATGCATTGGCGTCGTCAAGACTTCATTTCAAATGTTAGTTGTGGA
GTTATTGCCTCTTCAAATGAGAGGAGGATGGGTAATCTTGCATTCTGGTA
GATCCTGTTACATGGCCAGCAGACGAGAAAACAGTGCTCCCCAGGAGTAT
ATGCTCACTGGTAAATTTTTCGGTTTGTTTCTCTTTCAATCGACACAATC
AGTGCACCTTCTATTGATACTTGGCGTTTGTCAGTCACCTCCTGGGCCTC
ACTTCCCGAACCACCCGCCAGCATTACTTGATTGGCGGTCTGAAGACCTT
TGATTGACTAGACCCTGCGCTCGATTGGTATCCCTGTACAAATAAGTATG
GCCACAAACAAAAAGTTTGTCATTAAGCCATACAAGCAGCATGCACAGAT
GGATCGGCAGCGGGCGACCACAGTGTGGGGAGAGCTGAGCGGGGCCATTG
ACGAGATCTTCCGAAAGAACGCCAGCAACCTGAGCTTTGAACATCTTTAC
AGGAATGCCTACAACCTCGTCTTACACAAACACGCCGAAATCCTGTATCA
AGGAGTGCAAAATTCGGTGCAAACCTACTTAAATACAGTGAGCACATTCG
TCGCTAATGCGTCTGACGAGCGTCTGCTGGAGGAGATCAATTTGAGGTGG
GGCGAGCACCAGGTAACCATGAGCATGGTTCGAGATATACTTATGTACAT
GGACAGGACGTACGTACCACAGCACAACAAAACCAAGGTGTACGACTTGG
GTTTGCGAATTTTCCGGGACGCGATCGCCCGGCACCCTCAGGTTAAGGAC
CGGCTGCGGTCACTGCTGTTGGGGAGCATTAGAGCGGAGCGCGAGGGACA
GCTGGTTGACAGGAGCTTGCTGCGCTCCACGCTGTCCATGCTCATGGAGC
TGGGCATCGAGGGAACGGCCGTATACGAGGAGGACTTTGAGAGGGAGTTC
CTGAGGACGACGAGGGCCTTCTACCGGGCAGAGAGCCTGGACGTGATAAG
CAAGAACACCTGTCCTGTTTACATGCGCAAGGCGGAGCAGCGGCTCCTGG
AGGAGCAGGAGAGGGTGGCACAGTACTTGGACCGATCCACTGACCCGAAG
CTGCGAGCCATATTGGAGGAGGAGCTGGTGAAGGCGCACGCGAGCAGTCT
GATCGAGATGGAGGGGTCGGGGTGCCGGGCCATGTTTCGTGACGCCAAGA
CGGAGGACTTGGAGCGGATGTACCTCTTGTTCGCCCGCGTCCCCAGCACT
CTGGAGGAGCTTCGGGGGGCCATGGCGGAGTATGTGAAGTCGGCGGGGAG
GGAGCTGGTGGCGGACCAGGAGAGAGTGAGGGAGCCGGTGGTGTTCGTGA
AGGGCCTGCTCGACATGCGGGATAAGTTTGATCGGATCGTCTCAGATGCT
TTCCAAGGAGAAAAAGCTGCCCAGAAAAAACTGCAGGAGGCGTTCGAGGA
TTTCATCAACATGGACACTCGCTGCGCGCATTACCTTGCCCTTTATGTGG
ACGACCTTCTCAAGGTGGGGTTGAAGGGGATGACGGAGGAAGAGGCAGAC
GGGGCCCTGAGCAAGTTTATCGTCATCTTCAAGTTCTTGCAGGACAAGGA
CGTTTTCGAGAACTACTACAAACAGCACTTGAGCAAACGCCTGCTGGGAG
GGCGGTCCGTGAACGACGAGTTTGAGAAGCAGATGATCGTCAAGCTGAAG
ACGGAGTGCGGTTACCACTTTACGAGCAAGCTTGAGGGGATGTTCAACGA
CATGCGGCTTTCCAAGGACGCGATGGAGGAATTTCGAAAGGCGGGCGTAA
GCCGGGTGGGCGGAGTGGAGCTGGAAGTGAACATGCTGACGATGGGCTAC
TGGCCTTCGCAGGCATTGACAACTTGCAACCTCCCGCCCGAGATCAAGGC
CTGCTGCCAAGTCTTCCAAAATTTTTACTTGAACAAACATAGTGGGCGCA
AAGTCACGTGGCAGGCGGGCATGGGCTCAGCGGACATTCGTGCCACGTTC
GGGAATGGCCGGAAGCATGAACTGAATGTGCATACCTACTCCATGTGCAT
TCTTATGCTGTTTAATGCTGCTGACACCCTCACGCTGGAGGACATTCAGA
AAGCCACGCAGATCCCTGAGAACGAGCTCCGACGCAATCTGATATCGCTG
TGCACTAACAAGCACCGGATCCTCCGCAAGGCCTCTAAGGGGAAAGGAGT
CACGGACAACGACCGTTTCACCTTTAACGCCAATTTTACGAGCAAGTTGA
GGCGAATCAAGGTGCCTCTGGTCTCTATGAAAGAAGCCGTGGTAGATGGG
CGGGCGGGAGAGGGAGAGGGAGGAGGGGGAGGCTTGGGCCCAGGTGGGGA
GCGGCTTGTCAATGGGATCCCTGCTGCAGTGGAGGAAGATCGACGACACC
TGGTTGAGGCAGCGATCGTGCGCATTATGAAGGCACGCAGGAAACTGGGG
CACAATGAGTTGATCGCTGAGGTCACCCGGCAGCTCTCTATGCGTTTTCC
TGCATCTCCCCCGTTCATTAAAAATCGGATCGAAAGTCTAATAGAAAGGG
ACTATTTGGAGAGAGGGGCAAATGACCGAAAAACTTACGCTTATTTGGCG
TGAGATTACACATTCGTAGTGTTATAAAACACTGGACACGCCGATCTGCA
ATATAGGTCGGAGGGATGCAACGCGATTGGAGGGCAGCGCTGGGTGTATG
CGATAGGTGTAATAAACGCAAGAGAAACGCCCACCGAGCTCAATGAAGGG
GATGTCGCTGTCACAAAATTAGTGTCCAGTCACACAGGAAGTAGTGGACG
TAAATAACCTCTAAAGTGAGCAAAAGTAGGTAGTCAAAGAATTAAGAACT
GTACAGCATACCA

protein sequence of rna6384

>rna6384-protein ID=rna6384-protein|Name=rna6384|organism=Nannochloropsis gaditana|type=polypeptide|length=453bp
MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQI
TKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAE
EDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEAL
WRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLP
RLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSA
PSTGPRLLAAEILTNVLRTSKASDHVPVMVELELEHEKLGKEGSRNKVNN
ASDRKEGAGQRVEPLPEQKAVLAAFSPLPPSVKDAIEGRTIFRKILPDPK
QPSIKGFFASTRTPSVVSNTKGQSAGSVESSSGPEGAASKASLFPAATVT
EKLCTCEAECDSKRLAKNENVKEAMSIASNKKRQPLKSDKGQLSKYLKFS
PDL

mRNA from alignment at CM002468.1:396357..398358+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6384 ID=rna6384|Name=rna6384|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp|location=Sequence derived from alignment at CM002468.1:396357..398358+ (Nannochloropsis gaditana)
CCCCCAAGGCAACGAGCGGGACTAAAAACCATGTTGTCTGTTGTTTGAAA
GCGGCCGTGAAGATACTGCCATTGATACCGTGAATAAATATTCTTTACTG
GGCGTGTGGTGTGCTTATCATGATAGCTTGTGATTGTTGCTTATACGCGT
CTGATTTTTAATCTCTGTCCTTCGATTACGTgcgctcctcttcgtcacaG
CAAGGTCTTCGTGTTCTCATCTTCCGTGAGGCCGCAAGCAGCGTTTAATT
CATTATCCACTTTACATATGACTTCCGATTACACATGGTGAAGATCATAA
GCTGGAATGTCGCCTCACTACCTGCTTTGCAGGGGTTTATCGAGCATGAG
AAGGGTAGTATGAATCGCTTCTTAGAAGACCTGTGTGTGGACATCATGTG
CTTCCAAGGTACGGAGGGAGCTGAGGGCAAGTGTGCCATTTTTCAACGAT
TGATAAATTGAATATATGTAAGCAAATAAGGGAGGGTTACGAACGTGGTA
TTTGGAATTTTTGTTGACCCAAGCGTCGAATCAGTCCAGCCGTCTTATTT
CTTTTTAAACATTTTCAACATTTTAAACGAATCCTCAGAAACAAAGCTAT
CTGTGGCACAAATTACCAAGAAACaagcctcctttctcgtACCTGATGGC
AAGTGGTGGACTTATTGGGCGGTGGGACAGACCCCCGGATACTGCGGTGT
CGCTACTTTTTGCAAGGCGGAGCAGCCCCTCTCCGTCTACACGGATGCGG
ATCTTTTtgcggaagaggatgaggcgcAACACTGCATCTCCAAAGAAGGG
CGTTTGGTAGTGACGGACCATGGTGACTTTGTGCTATTCAATGTCTACTG
CCCCAATGCCGGGGGCAAAGGTCGGCCCCGGATCGAATTTAAGGCGCGGT
TTCTAGAAGCACtctggaggaagatggaagagTTTCGTGTCtcgagagga
agacgagtgATTCTCGCGGGGGACTTAAATTTGGTGGCAGACATGAAGGC
AGACATGCACGAAGAATTTTGGAGCGCGGATGGTGTGGATGAACGGACGC
GGCATTGGTTGCCCCGCCTCTTGTGTGAAGGGACCTACGTTGACTCGTTC
AGGAGCCTTCACCCTGACCGGAAAGACGCCTACACTTTCTTCGACAACTA
CGTGACCACGCGACGGGGTCTCAATCAAGGTTATCGGATCGACTACATCC
TTGTCTCCTCTGCTCCATCGACGGGTCCAAGGCTCCTCGCCGCCGAGATC
CTGACAAACGTTTTGCGAACTAGCAAGGCCTCAGACCACGTGCCTGTGAT
GGTGGAACTGGAGCTAGAACATGAAAAACTGGGTAAAGAGGGGAGCAGAA
ATAAAGTGAATAATGCATCTGatcggaaggaaggagctggACAACGTGTT
GAGCCACTTCCAGAGCAAAAAGCCGTCCTTGCCGCTTTCTCACCCTTGCC
ACCTTCCGTGAAAGATGCCATTGAAGGACGGACAATTTTTCGAAAAATCC
TTCCAGACCCGAAGCAACCCAGTATCAAAGGATTTTTTGCGTCGACAAGG
ACACCGTCTGTGGTTTCGAACACGAAGGGGCAATCCGCAGGATCTGTTGA
AAGTTCATCTGGCCCCGAAGGCGCTGCGAGCAAGGCCTCTTTATTCCCAG
CCGCAACTGTGACAGAGAAACTTTGTACGTGTGAAGCAGAATGCGACTCC
AAGCGATTGGCCAAAAATGAGAATGTGAAAGAGGCTATGTCGATAGCAAG
CAACAAAAAGAGACAACCGCTCAAGTCGGACAAGGGCCAGCTAAGCAAAT
ACTTGAAATTTTCTCCCGATTTGTAAGTGTTGCAATGAGACGGGGTCTCA
CGTCTCAATAACAAGTGTTCACATGCAATGGATTTGAAAAAAATATAATT
TTTGTCACTCAAACATGGTTAAGAGGTAGTCATAACTTACAATATCATCA
TAGCTATTGTTTTATCTTTGGATCCCTTTCATATTGCTTGTCTCTCCAAA
AC

Coding sequence (CDS) from alignment at CM002468.1:396357..398358+

>rna6384 ID=rna6384|Name=rna6384|organism=Nannochloropsis gaditana|type=CDS|length=2724bp|location=Sequence derived from alignment at CM002468.1:396357..398358+ (Nannochloropsis gaditana)
ATGGTGAAGATCATAAGCTGGAATGTCGCCTCACTACCTGCTTTGCAGGG
GTTTATCGAGCATGAGAAGGGTAGTATGAATCGCTTCTTAGAAGACCTGT
GTGTGGACATCATGTGCTTCCAAGAAACAAAGCTATCTGTGGCACAAATT
ACCAAGAAACaagcctcctttctcgtACCTGATGGCAAGTGGTGGACTTA
TTGGGCGGTGGGACAGACCCCCGGATACTGCGGTGTCGCTACTTTTTGCA
AGGCGGAGCAGCCCCTCTCCGTCTACACGGATGCGGATCTTTTtgcggaa
gaggatgaggcgcAACACTGCATCTCCAAAGAAGGGCGTTTGGTAGTGAC
GGACCATGGTGACTTTGTGCTATTCAATGTCTACTGCCCCAATGCCGGGG
GCAAAGGTCGGCCCCGGATCGAATTTAAGGCGCGGTTTCTAGAAGCACtc
tggaggaagatggaagagTTTCGTGTCtcgagaggaagacgagtgATTCT
CGCGGGGGACTTAAATTTGGTGGCAGACATGAAGGCAGACATGCACGAAG
AATTTTGGAGCGCGGATGGTGTGGATGAACGGACGCGGCATTGGTTGCCC
CGCCTCTTGTGTGAAGGGACCTACGTTGACTCGTTCAGGAGCCTTCACCC
TGACCGGAAAGACGCCTACACTTTCTTCGACAACTACGTGACCACGCGAC
GGGGTCTCAATCAAGGTTATCGGATCGACTACATCCTTGTCTCCTCTGCT
CCATCGACGGGTCCAAGGCTCCTCGCCGCCGAGATCCTGACAAACGTTTT
GCGAACTAGCAAGGCCTCAGACCACGTGCCTGTGATGGTGGAACTGGAGC
TAGAACATGAAAAACTGGGTAAAGAGGGGAGCAGAAATAAAGTGAATAAT
GCATCTGatcggaaggaaggagctggACAACGTGTTGAGCCACTTCCAGA
GCAAAAAGCCGTCCTTGCCGCTTTCTCACCCTTGCCACCTTCCGTGAAAG
ATGCCATTGAAGGACGGACAATTTTTCGAAAAATCCTTCCAGACCCGAAG
CAACCCAGTATCAAAGGATTTTTTGCGTCGACAAGGACACCGTCTGTGGT
TTCGAACACGAAGGGGCAATCCGCAGGATCTGTTGAAAGTTCATCTGGCC
CCGAAGGCGCTGCGAGCAAGGCCTCTTTATTCCCAGCCGCAACTGTGACA
GAGAAACTTTGTACGTGTGAAGCAGAATGCGACTCCAAGCGATTGGCCAA
AAATGAGAATGTGAAAGAGGCTATGTCGATAGCAAGCAACAAAAAGAGAC
AACCGCTCAAGTCGGACAAGGGCCAGCTAAGCAAATACTTGAAATTTTCT
CCCGATTTGTAAATGGTGAAGATCATAAGCTGGAATGTCGCCTCACTACC
TGCTTTGCAGGGGTTTATCGAGCATGAGAAGGGTAGTATGAATCGCTTCT
TAGAAGACCTGTGTGTGGACATCATGTGCTTCCAAGAAACAAAGCTATCT
GTGGCACAAATTACCAAGAAACaagcctcctttctcgtACCTGATGGCAA
GTGGTGGACTTATTGGGCGGTGGGACAGACCCCCGGATACTGCGGTGTCG
CTACTTTTTGCAAGGCGGAGCAGCCCCTCTCCGTCTACACGGATGCGGAT
CTTTTtgcggaagaggatgaggcgcAACACTGCATCTCCAAAGAAGGGCG
TTTGGTAGTGACGGACCATGGTGACTTTGTGCTATTCAATGTCTACTGCC
CCAATGCCGGGGGCAAAGGTCGGCCCCGGATCGAATTTAAGGCGCGGTTT
CTAGAAGCACtctggaggaagatggaagagTTTCGTGTCtcgagaggaag
acgagtgATTCTCGCGGGGGACTTAAATTTGGTGGCAGACATGAAGGCAG
ACATGCACGAAGAATTTTGGAGCGCGGATGGTGTGGATGAACGGACGCGG
CATTGGTTGCCCCGCCTCTTGTGTGAAGGGACCTACGTTGACTCGTTCAG
GAGCCTTCACCCTGACCGGAAAGACGCCTACACTTTCTTCGACAACTACG
TGACCACGCGACGGGGTCTCAATCAAGGTTATCGGATCGACTACATCCTT
GTCTCCTCTGCTCCATCGACGGGTCCAAGGCTCCTCGCCGCCGAGATCCT
GACAAACGTTTTGCGAACTAGCAAGGCCTCAGACCACGTGCCTGTGATGG
TGGAACTGGAGCTAGAACATGAAAAACTGGGTAAAGAGGGGAGCAGAAAT
AAAGTGAATAATGCATCTGatcggaaggaaggagctggACAACGTGTTGA
GCCACTTCCAGAGCAAAAAGCCGTCCTTGCCGCTTTCTCACCCTTGCCAC
CTTCCGTGAAAGATGCCATTGAAGGACGGACAATTTTTCGAAAAATCCTT
CCAGACCCGAAGCAACCCAGTATCAAAGGATTTTTTGCGTCGACAAGGAC
ACCGTCTGTGGTTTCGAACACGAAGGGGCAATCCGCAGGATCTGTTGAAA
GTTCATCTGGCCCCGAAGGCGCTGCGAGCAAGGCCTCTTTATTCCCAGCC
GCAACTGTGACAGAGAAACTTTGTACGTGTGAAGCAGAATGCGACTCCAA
GCGATTGGCCAAAAATGAGAATGTGAAAGAGGCTATGTCGATAGCAAGCA
ACAAAAAGAGACAACCGCTCAAGTCGGACAAGGGCCAGCTAAGCAAATAC
TTGAAATTTTCTCCCGATTTGTAA

Synonyms

Publications