EWM24315.1, cds6369 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|585105707|gb|EWM24315.1| (exodeoxyribonuclease iii [Nannochloropsis gaditana]) HSP 1 Score: 942.569 bits (2435), Expect = 0.000e+0 Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0
Query: 1 MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELEHEKLGKEGSRNKVNNASDRKEGAGQRVEPLPEQKAVLAAFSPLPPSVKDAIEGRTIFRKILPDPKQPSIKGFFASTRTPSVVSNTKGQSAGSVESSSGPEGAASKASLFPAATVTEKLCTCEAECDSKRLAKNENVKEAMSIASNKKRQPLKSDKGQLSKYLKFSPDL 453
MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELEHEKLGKEGSRNKVNNASDRKEGAGQRVEPLPEQKAVLAAFSPLPPSVKDAIEGRTIFRKILPDPKQPSIKGFFASTRTPSVVSNTKGQSAGSVESSSGPEGAASKASLFPAATVTEKLCTCEAECDSKRLAKNENVKEAMSIASNKKRQPLKSDKGQLSKYLKFSPDL
Sbjct: 1 MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELEHEKLGKEGSRNKVNNASDRKEGAGQRVEPLPEQKAVLAAFSPLPPSVKDAIEGRTIFRKILPDPKQPSIKGFFASTRTPSVVSNTKGQSAGSVESSSGPEGAASKASLFPAATVTEKLCTCEAECDSKRLAKNENVKEAMSIASNKKRQPLKSDKGQLSKYLKFSPDL 453
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|302837660|ref|XP_002950389.1| (hypothetical protein VOLCADRAFT_104648 [Volvox carteri f. nagariensis] >gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f. nagariensis]) HSP 1 Score: 166.007 bits (419), Expect = 1.231e-40 Identity = 104/287 (36.24%), Postives = 153/287 (53.31%), Query Frame = 0
Query: 1 MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQT-PGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKG-RPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELE 285
++ I+ WN+ L +E S F++ L +DI CFQE KL A+IT++ A + ++WA + PGY GV T+C+ D ++ + + EGR V+TDHG FVL NVY PNAG + R R+ +K FL AL KM+E + GR+V+L GDLN+ A+ + D+H D++ L L+ Y D +R LHPD + +YT +D T+ R N G RIDY+LVS P P + + EILT K SDH +++ L ++
Sbjct: 18 VLNIMCWNINCLTPTVRNMELRHKSFRGFMDHLQLDIACFQEVKLPAARITRELACVE----GFQSFWASSTSKPGYSGVTTWCRTATAAPRDAAVDCLGGDERPE--LDTEGRFVLTDHGAFVLLNVYVPNAGDRPERARLPYKLAFLRALRTKMDEL-TALGRQVVLVGDLNIAAERR-DVHPTLDFDSMYDKQELAELSGLIA--AYPDVWRHLHPDTEGSYTVWDER-TSARAFNTGLRIDYVLVS--PGLLPYVQSCEILTAAAIPPKWSDHAAILLTLRVQ 291
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|818252912|gb|KKP39574.1| (exodeoxyribonuclease III Xth2, exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10] >gi|1083927065|gb|OGJ45068.1| exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYA2_FULL_33_21] >gi|1083928116|gb|OGJ46061.1| exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYA12_FULL_33_12] >gi|1083933230|gb|OGJ50848.1| exodeoxyribonuclease III [Candidatus Peregrinibacteria bacterium RIFOXYB2_FULL_33_20]) HSP 1 Score: 154.836 bits (390), Expect = 2.288e-40 Identity = 106/286 (37.06%), Postives = 158/286 (55.24%), Query Frame = 0
Query: 2 VKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMH--EEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELE 285
+KIISWNV + A+ +K FLED DI+ QE K ++ K L P G ++ Y+ + PGY GVA + K +Q L++ + E DE EGR + D GDF+LFNVY PN GG G R++FK F + + + + + S+G+ +I+ GD N A + D+ +E S G RHW+ + L G VD FR +HPD+K+AYT++ + T R N G+RIDY L++S PR+ AEIL+ V+ SDH P+++E+E++
Sbjct: 1 MKIISWNVNGIRAIS-----KKREFWDFLEDFSPDILALQEVK---SEKYKLSMDILQPPGGYFAYFNCAKRPGYSGVAIYSK-KQILNISQTIGI-KEFDE-------EGRFMEIDFGDFILFNVYFPN-GGSGELRLKFKLDFYDKFLQHILDLK-SQGKGIIVGGDFN-TAHTEIDLARPKENESISGFMPIERHWVDKYLRHGL-VDIFRQIHPDKKNAYTWW-SMRTAARVRNIGWRIDYFLITS--DLMPRIKQAEILSEVI----GSDHCPILLEIEMD 258
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|971519435|dbj|GAQ78726.1| (putative endonuclease/exonuclease/phosphatase family protein [Klebsormidium nitens]) HSP 1 Score: 154.836 bits (390), Expect = 4.623e-38 Identity = 111/286 (38.81%), Postives = 151/286 (52.80%), Query Frame = 0
Query: 2 VKIISWNVASLPALQGFIEHEKGSM-NRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTP-GYCGVATFCK-AEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKG-RPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELE 283
+ I+SWNV LP + GS+ N F + L DI+CFQE K+ ++ K A VP + ++WA Q GY GV T+ K PL D L + I++EGR+++TDHG FVLFN+Y PNAG K RPR++FK +FL AL K +E V+ GR VI+ GDLN V+ AD+H F W L E YVD++R LHPD D +T + N + R N+G RID+ + +L+ AEIL K SDH V + L+
Sbjct: 1 MHIVSWNVNGLPTTLKEASYHHGSVENYFAQVLKADIVCFQEAKVREDRLEKWLA--CVPG--YESFWAFSQNKKGYSGVVTYVKEGFSPLDAAADC-LPGGGGGGEDDITQEGRVMMTDHGAFVLFNIYVPNAGEKPLRPRLDFKMKFLNALRAKCDEL-VASGRHVIVVGDLN-VSHTTADIHSCFGLHKVYAPEELAWTDSFLSE--YVDAWRHLHPDVSDGFTCW-NQKKSARLFNEGARIDFTVCDKGFKG--QLVGAEILDT---PDKWSDHTAVSLTLK 271
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|916824467|ref|WP_051431523.1| (exodeoxyribonuclease III [Bdellovibrio bacteriovorus]) HSP 1 Score: 145.976 bits (367), Expect = 5.526e-37 Identity = 101/285 (35.44%), Postives = 153/285 (53.68%), Query Frame = 0
Query: 2 VKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHE--EFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELEL 284
+KIISWNV + A ++KG M+ F++ DI C QETK + Q+ + + + +YW+ GY GVATF + PL + D AE + EGR+V+TDHG+F L+N+Y PN GG G R FK +FL+ L + +E +++ GR+VI+ GD N VA D+H+ G R W L G ++D+FR HP ++ ++++D Y R N+G+RIDY+ VS L++A++L V + SDH PV+V L+
Sbjct: 11 LKIISWNVNGIRAC-----YKKGLMD-FVKSQAPDIFCVQETKAHIDQVEVEVKNLGYKN----SYWSSAMKKGYSGVATFTNLD-PLKIEFQFDNIAEYES-------EGRIVMTDHGEFDLYNIYFPN-GGSGLERHNFKQQFLKDLNKHLEA-KLATGRQVIVVGDYN-VAHENIDVHDPIRLSKESGFLPEERAWFDSFLDLG-FIDTFRYFHPQAQERFSWWD-YRKLARISNRGWRIDYVCVSKGLE--KNLVSADVLDQV----EGSDHCPVLVNLKF 266
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|578018841|gb|AHI07103.1| (exodeoxyribonuclease III [Bdellovibrio bacteriovorus W]) HSP 1 Score: 145.206 bits (365), Expect = 1.189e-36 Identity = 101/285 (35.44%), Postives = 153/285 (53.68%), Query Frame = 0
Query: 2 VKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHE--EFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELEL 284
+KIISWNV + A ++KG M+ F++ DI C QETK + Q+ + + + +YW+ GY GVATF + PL + D AE + EGR+V+TDHG+F L+N+Y PN GG G R FK +FL+ L + +E +++ GR+VI+ GD N VA D+H+ G R W L G ++D+FR HP ++ ++++D Y R N+G+RIDY+ VS L++A++L V + SDH PV+V L+
Sbjct: 21 LKIISWNVNGIRAC-----YKKGLMD-FVKSQAPDIFCVQETKAHIDQVEVEVKNLGYKN----SYWSSAMKKGYSGVATFTNLD-PLKIEFQFDNIAEYES-------EGRIVMTDHGEFDLYNIYFPN-GGSGLERHNFKQQFLKDLNKHLEA-KLATGRQVIVVGDYN-VAHENIDVHDPIRLSKESGFLPEERAWFDSFLDLG-FIDTFRYFHPQAQERFSWWD-YRKLARISNRGWRIDYVCVSKGLE--KNLVSADVLDQV----EGSDHCPVLVNLKF 276
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|1041169234|emb|CUS05269.2| (Exodeoxyribonuclease [Ardenticatena]) HSP 1 Score: 143.665 bits (361), Expect = 3.690e-36 Identity = 105/289 (36.33%), Postives = 149/289 (51.56%), Query Frame = 0
Query: 1 MVKIISWNVASLPALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMH--EEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELELEHE 287
M+ + SWNV L A+ H KG +L DI+C QETK Q+++ L P G ++TYWAV + PGY GVA +CK + PLSV L +EGR +V D GDF L N Y PN G + R+ FK ++ +E R G+ VI GD+N A D+ + +A G R W+ R++ G Y+D++R+L+PD AYT++ VT R N G+R+DY +S P PR++ A I +VL SDH PV + L +E +
Sbjct: 1 MLTLYSWNVNGLRAV-----HRKGIFLDWLARTQPDILCLQETKCRPDQLSE---DVLHPPG-YYTYWAVSERPGYSGVALYCK-QPPLSVQVGLGL--------PDFDREGRTLVADFGDFTLVNAYFPN-GSRDHSRLPFKMQYNADFLDTIENLRQG-GQSVIFCGDVN-TAHQPIDLARPRQNMNATGFMPIEREWIDRVVERG-YLDTYRTLYPDTTGAYTWWAQ-VTFSRQKNVGWRLDYFFIS--PDLRPRVMDAAIHPDVL----GSDHCPVSLTLAIETD 260
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|760450489|ref|XP_011402313.1| (DNA-(apurinic or apyrimidinic site) lyase 2 [Auxenochlorella protothecoides] >gi|675356820|gb|KFM29260.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Auxenochlorella protothecoides]) HSP 1 Score: 144.436 bits (363), Expect = 6.595e-36 Identity = 114/306 (37.25%), Postives = 156/306 (50.98%), Query Frame = 0
Query: 19 IEHEKGSMNRFLEDLCVDIMCFQ--------------ETKLSVAQITKKQASFLVPDGKWWTYWAVG-QTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGK-GRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEG--TYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELE----------LEHEKLGKEGSRN 296
I + GS++ +L +DI CFQ ETKL AQ+TK+ V D + +YWAV + GY GV T+ + Q + + + D A + I +EGR+VV+DHG FVL NVY PNAG + RPR+ FK +FL AL R + FR +GR+VIL GD N+VA AD+H D L L EG YVD +R LH D YT +D T+ R N+G RIDY+L + P P ++A E++ K SDH +++ L+ L EKL G R+
Sbjct: 9 IALKYGSLSDLFGELELDIACFQVLVLVMVVVQINDRETKLVEAQLTKEIVC--VDDCE--SYWAVSREKKGYSGVVTYARG-QWRAAHVEVDCLAS---GESDIDREGRVVVSDHGAFVLINVYVPNAGDRPARPRLGFKLKFLHALKRTADGFR-KQGRQVILVGDFNVVA-TPADVHASMPFDDLYAPEELAAL-HALTEGPAAYVDVWRRLHLGVADVYTVWDER-TSARAFNRGLRIDYVLCT--PGLLPSVVACEVVGTDRLPPKWSDHAGLLLRLQGLAAPRPRPALRAEKLRPPGQRS 300
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|168008755|ref|XP_001757072.1| (predicted protein [Physcomitrella patens] >gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 148.288 bits (373), Expect = 1.509e-35 Identity = 101/288 (35.07%), Postives = 150/288 (52.08%), Query Frame = 0
Query: 2 VKIISWNVASL-PALQGFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVG-QTPGYCGVATFCK-AEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNA--GGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMHEEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKA-SDHVPVMVELE 283
++I SWNV L L+ + N F + L DI+CFQE K+ ++ K A DG + ++WA + GY GV T+ K A PL AD E A+ + EGRL+ TDHG FVL NVY PN+ G KGRPR++FK R+L+AL + ++ V G+ +++ GD N VA D+H + + R WL L Y+D +R HPD K+ ++ +D + R N+G RIDY + + L + T++++ K SDH V+V L+
Sbjct: 82 MRIFSWNVNGLRTTLKDVAACHTSASNYFCQVLNADIVCFQEAKIQEEKLEKWIACV---DG-YHSHWAFSREKKGYSGVVTYVKEALSPLDA--KADWLGENSSAED-LCNEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTCDDL-VRSGKHIVIVGDFN-VAHKDIDVHSRWKVEEIYSLEEREWLDGFL--SRYIDLYRHFHPDEKNIFSVWDQK-SDARTRNEGLRIDYAICNEG------FLTEVLETDIVKMQKQWSDHAAVVVTLK 351
BLAST of EWM24315.1 vs. NCBI_GenBank
Match: gi|1083737847|gb|OGI20424.1| (exodeoxyribonuclease III [Candidatus Melainabacteria bacterium RIFCSPHIGHO2_02_FULL_34_12]) HSP 1 Score: 141.739 bits (356), Expect = 1.666e-35 Identity = 96/287 (33.45%), Postives = 161/287 (56.10%), Query Frame = 0
Query: 2 VKIISWNVASLPALQ--GFIEHEKGSMNRFLEDLCVDIMCFQETKLSVAQITKKQASFLVPDGKWWTYWAVGQTPGYCGVATFCKAEQPLSVYTDADLFAEEDEAQHCISKEGRLVVTDHGDFVLFNVYCPNAGGKGRPRIEFKARFLEALWRKMEEFRVSRGRRVILAGDLNLVADMKADMH--EEFWSADGVDERTRHWLPRLLCEGTYVDSFRSLHPDRKDAYTFFDNYVTTRRGLNQGYRIDYILVSSAPSTGPRLLAAEILTNVLRTSKASDHVPVMVELEL 284
+K+ISWNV + A Q GF+E +L DI+C QETK + Q+ + + PDG + ++W+ G+ GY GVATF K E P + + + + C S EGR+++TD+ DF+LFN+Y PN G + + R+ +K F + + +++ + +G+++I+ GD+N A + D+ +E + G R W+ +L+ G Y+D+FR + D YT++D +T R N G+RIDY +S P+ L +A I+++V+ SDH P+ +E+EL
Sbjct: 4 LKLISWNVNGIRAQQKKGFVE--------WLTKTSPDILCVQETKAHIEQLNNE---LINPDG-YKSFWSSGEKKGYSGVATFTKKE-PKKIESGLGV-------KKCDS-EGRILITDYDDFILFNIYFPN-GQRDQERLNYKMGFYDEFLKYIDDLK-EKGKKIIVCGDVN-TAHKEIDLARPKENINTSGFLPIERKWMDKLVEHG-YIDTFREFNKD-SGHYTYWDQ-ITRARERNVGWRIDYFFIS--PNLRKNLKSAFIMSDVM----GSDHCPLGIEIEL 257 The following BLAST results are available for this feature:
BLAST of EWM24315.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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