rna6382, rna6382 (mRNA) Nannochloropsis gaditana

Overview
Namerna6382
Unique Namerna6382
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2575
Alignment locationCM002468.1:390699..392797 -

Link to JBrowse

Properties
Property NameValue
Producthypoxanthine phosphoribosyltransferase 1
Orig transcript idgnl|cribi|Naga_100047g25.6084.mrna
Orig protein idgnl|cribi|Naga_100047g25.6084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:390699..392797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g25gene6166Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24321.1cds6367Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6382rna6382-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6382 ID=rna6382|Name=rna6382|organism=Nannochloropsis gaditana|type=mRNA|length=2575bp
CCGCGCTGACTTCCTTATTGAATGTCCCGTTAATTTTACCAGAAGAGACT
TTTTTTTTCCCTTGTGATTTTCTAACAGAGAAAGAAAAAATAGACTACAT
ATTCCTTGTCGACATTCATACATGTTCCAATGAGTGTGCAATGAAGTTCA
GAAAACATAGGCATCTGTCGTGAGGGATCGTCCCTCGCGGCTTCCTCCAC
ACGCTTCCATTGACATTGCTCTCACGCATGGTTGAGGTTTTGGAACTGTA
CTTACATTATCGCGTGGGAATACAATTCTCTTATATTTTTTAAATTTAGC
GCAAGGTGATGTTAAAAGTCAACAGTGTCTTCTTTGCGTAGATTACTCCA
CGGGGTGGTACTCAGATCTCCGAGGTGGCAGCGCCTCAATTACCAGCCCA
AAAGCACAGAATGACCCCTGTATGATTCACTCCCTCGTGCAAGTCCTTGA
AATGTTAATTATGTGCGACTGATCCCTTTAAGTGTATGATTTTTGATATT
TATCCTCCCTTTTACCAGTTATTGAGACCTTTTAAGCACTGAACGGTTTC
CCTCGTTTTCAGCCTGAAGACCAAACGTTAAGTTGATTGACCTTTTTTCC
CCTGTCACAGCTAGCGTGAGCTATGAGCGGGTTTTACGGTAATAATCCTT
TCGACATGCTGGACAGCGGCGTGACCGGCAGGCCTTCAGGTACTCAGTCT
GAAAGCAAGCCTATCCCGCAAGCTACCTCGCAGCAACAACACGCGGAGAC
TTTAGACGATCTCATCAATCCTTTCGCAGTGCTCGGTTTAGACAATGATG
ACAAGTCTTCCTCGACTTCGCTTCCTCATCCCCAGGCCTCGGGCGCGAGC
TGCCTTCCTTCACAGGCTCCGAGCGCCACAACGTGCCCCCCCCCCCAGCT
CGTCGCACCCCAGCCTGTGGCCATGCTCCAAGCGCTCACACCCACTAGTC
AATCATTGCAGCCCCGGATTAATCCCTCCAGCCAATCCATATTTCAGCCG
CCAGCGCCTATTTTCACGCAACAAGTTTACACACCCTCGGTGAGCCCTGC
CTTCGGGAGCAGTCCGTCCTCTGCCTATGGACAAGCGAGCCCCGCCTACG
GTTCTTACTCCCCGACCAGCCCCGCTTTTGACAGCAGCCTACACACGGGA
GAACTCGGCTACCTTTCTCCCTCGCCGTCCCCTGTAGGAAGCGGCGGGGG
CGCCAAGGTTGTTACAGACGCCGACTTGACCCTCTTCGCCGGGCCCTCGC
GCTCTCCCACGCCAGCACCCGCCAGCCCGACTCCCATCACGCCCCACTTG
CAGCAGGGAGCACCCCCAGCAACAAGCGAGCACGTCACTGATGGATGGGA
CAACGACGATTTCGGGATCTCCTGGGATGCACCCGAAGCGACGTCGGCGG
AGACGCAGCCTGAGAAGCCCGAGCCCGCAGCCCCCGTGGAAGACCGATTC
CGGCAAGGATCTGCGGTGGAGTCCCCCTATGCAAGCCAGGACAAGACGCT
GAGCCCCACGGAGGCAGCGATCGCGGCGGAGCACAAGACGGAGGGGACCA
TCCTGGCCCGCATTTCCGTGCGTACCCTGATCGTGAAGGAGTGGAAAGAC
ACCTTCTGGACCATCAACAAGGGGAAGCTCCTCCTCTACCGCTCCCGCGA
AGACTTTTTGTACAACCCTGTTGGGGTAATGGTCAAGAAGGATATCCCCC
TCTGCGACAATCTGCGGTGTTCGGAGGTGACGTGCAAGCCCTATAAGGGC
TACGGGGACCTCTACCACTTCACCCTGGAGGAAATGCTGGACTACGGCCC
CTCCCTGGTCGCCAAGTTCGCCTCCAGGCGCGCCAAGAGCGTCCGGGAGC
TCCGTGCCGTCATTGTAGCCTACATCATTGCGGAGCGGAAGAAGCGGCTC
CGGGCAAGGCGACGATCGCCCGGCAGTCCGCGAGTCTATAGTAGCTCTCC
CTACGCGCAGGGAGGGGACTACCGACAACATCAACGCTCTCCCACAGTCG
GACGGACGGGTCCTCGAACGGCGAGTCCCAAGGCGGGAAGCGAAGCTTCA
GGTGCCTCGGGTGCGGGAGGCTTGGATAAGTACGCGAAGTGGGGCCAGAT
TAGTTGAAAGAAGGGCCGGGACAAAGGCTCTTAAGAGGGCAGGAGAGGGG
GCGTGTAAGCTCCAAATTTGAGTGACGACAGCAAGGAAATCATTACAAGC
GTTCATTTTAGGATTATAGAAAAATCTTGAAGACAAAGAAACTCCTCTAC
ATTGTCAATAAAGCCATTGCGAAAAGAGGTCGAGAAGCGCGTATTAGAGG
GACCCCTGAAAGGCTGTATCAGGAACGCATGTCCTCACGCTTGCGACAAG
ATTTCATGTATAGTAGCGGACCAATACAACGACCATCAAACAGAAGATAG
AATGCATTTGAGGGAAGTCGAGATCGTGAGAGGTTCGACGAACACACCGA
CAGACTAGATTGTCCATGTATTTTTTTCGCGTGAATGAAGAGACAGACAT
TGAGAGCTTCTGGTCTGGTCGGTTTTTGTTGCAGATTTTTTTCAAACAAA
GAAAGTAGATACGAATGTACATATA
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protein sequence of rna6382

>rna6382-protein ID=rna6382-protein|Name=rna6382|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MSGKDAVGVTKSGNPSAGTSAHAISDNSSPIVSTRRTGIIRIPDEGEGES
SDAPFLPVSSFLIPPQYQDAVSHVLIPHGLIQDRVHKLAFDINQEYADKT
LHLLCVLKGGSSFFWELQTALINLSSHRRTNTAKFQFSFDFVRVKSYEGT
ESTGKVQITGTDMKNLRGRHLLLVEDLIDSGLTMSQLVPYIEKNAAPASV
RVAALMEKRTHRSCGFKADYVAFDIPDLFVVGYSLDYNEAFRDMLHICVI
NELGIEKFKTNA
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mRNA from alignment at CM002468.1:390699..392797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6382 ID=rna6382|Name=rna6382|organism=Nannochloropsis gaditana|type=mRNA|length=2099bp|location=Sequence derived from alignment at CM002468.1:390699..392797- (Nannochloropsis gaditana)
AAAAGCTGGGAGGGCTTTGCATGCGCACGGGCACGAGACCGAGTACTTGT
GTCGGTTTGGCCTTTTCAATAATGCTAAAGCATGAAGGATCCTCATTAAA
GGGAGGTCAGACCGCTATTTCCATCCCACAAATGCAATCAAACTTGGACA
TTATCCCGGGAGACTCGAGTCTCGTTTGGAACCCTCCACATTCAACCAGG
CAAATGCGCTTTCTTACAACGAAGACCACAAGTTTGACTAATTTTTTAAG
CTTTATTTTTGTGATGATGTCAACATTCCCATGTTTAGTTGGCTAAAATT
AGAGCGCGATGAAACTTCCAGGGGAAGACGACGGAGATTCCGACTGCACC
AGGTCACATCAATCAAGGACCTCTCTGAGCTTTTTGCCATAGCCATATCA
CTACTCATTGTGCGCGATATTTTAGAGTTTCTTCAAAACTTTATGCGGCT
CTTTTGCGGCGTTGTATCGGACAACTTGAGAAACAGTGCACGTTTAGGGT
CCATGTGCCTCTCTCCCCAGACTTGTCCCCACCCTGAGTCCTCACGCACA
GTGTCGAAACCCGCCACAGGATCATGTGATGTACATTGGAAGCATAATTG
TGCAACCTGAGAGCCCATATCGAGCCTTTAACGTCAATCTTTCACATCGC
TCCCCCCCTCTCCCTTTTTTCTTGCCCCCATAGTGTCCCGTCGCGTGTGT
TCCTCGGAAATGAGCGGCAAAGACGCCGTTGGCGTCACTAAGAGCGGCAA
TCCGAGCGCAGGCACTTCGGCCCACGCCATTTCTGATAATTCTTCGCCCA
TTGTCAGCACTCGGCGAACGGGCATCATCCGCATCCCGGACGAGGGGGAG
GGCGAGAGCTCGGATGCTCCCTTCTTACCTGTATCCTCCTTCCTCATCCC
GCCGCAATACCAGGACGCCGTATCGCACGTTCTCATTCCCCATGGACTGA
TACAAGATCGAGTTCATAAGCTTGCCTTCGACATCAATCAGGAATACGCC
GACAAGACCTTGCACCTCCTCTGTGTCCTCAAGGGCGGCTCCTCCTTTTT
CTGGGAGCTTCAAACCGCCTTGATCAATCTCTCGTCGCATCGGCGGACAA
ACACGGCAAAGTTTCAATTCTCGTTCGACTTTGTGCGGGTGAAGTCGTAC
GAGGGCACTGAAAGCACTGGCAAGGTGCAAATCACGGGCACGGACATGAA
AAACTTGAGGGGCAGACACTTGTTGCTCGTGGAGGACTTGATTGACTCGG
GGCTGACCATGTCGCAGCTGGTGCCGTACATTGAAAAAAATGCGGCCCCG
GCCAGTGTTCGGGTGGCGGCCCTGATGGAGAAGAGGACGCACCGGTCGTG
CGGGTTCAAGGCGGACTACGTGGCCTTCGACATCCCGGACCTCTTCGTGG
TGGGCTACTCCCTGGACTACAACGAAGCCTTTCGAGACATGCTGCACATC
TGCGTGATCAACGAGCTCGGCATCGAGAAGTTCAAGACCAACGCCTGAGT
GAATGAATCGGACCTAGTGGAGCCTACAGAGATGGAGGAAGAAACAGCAG
GACACGAACGGTATAGCGCGGCCGAAAGCGTTGAATATGCAAGCGAAAGC
CGTATTGGAGAGATAGTGATTGAGAAGTCAGGAAGGAGATAGGTCGTGAA
GACAGAGCTCCCGAGTGCTTCGTGGGGGGGTCATGCAACGCTGAGAAAAG
GACTTTACTGTATGTAACTCATAGAGGGGCAACCCGCGATACATGCATCA
GGGACATGAGGGTTAACGAAAAGTACATAAATGGGGTGATATATATATAT
CAAAAACTGGCTCTATTTTTGCTGCAAGAGGTGATATAGGGAATACAATC
GAGCATTGAGACAAATATACATATGTTTCGTTGTCGTCGTGTTTCCCTTG
AGACCGATGAATTTTCAAGAGCATAGTCTGTATGTATGCTATGTCAATAT
TATATGAGATCGCCCAGAAGAAAGAGGGTCGGCTATATGGAGGGCTTTGC
GTGCGGCTTTGAGTACTCCTCCGGAGTCTACTGATGTTTCGCACTACCGC
GCAGAAGTATTCTCGAGGATTTTTATAAAAGAAAAAGTGTACACACACA
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Coding sequence (CDS) from alignment at CM002468.1:390699..392797-

>rna6382 ID=rna6382|Name=rna6382|organism=Nannochloropsis gaditana|type=CDS|length=789bp|location=Sequence derived from alignment at CM002468.1:390699..392797- (Nannochloropsis gaditana)
ATGAGCGGCAAAGACGCCGTTGGCGTCACTAAGAGCGGCAATCCGAGCGC
AGGCACTTCGGCCCACGCCATTTCTGATAATTCTTCGCCCATTGTCAGCA
CTCGGCGAACGGGCATCATCCGCATCCCGGACGAGGGGGAGGGCGAGAGC
TCGGATGCTCCCTTCTTACCTGTATCCTCCTTCCTCATCCCGCCGCAATA
CCAGGACGCCGTATCGCACGTTCTCATTCCCCATGGACTGATACAAGATC
GAGTTCATAAGCTTGCCTTCGACATCAATCAGGAATACGCCGACAAGACC
TTGCACCTCCTCTGTGTCCTCAAGGGCGGCTCCTCCTTTTTCTGGGAGCT
TCAAACCGCCTTGATCAATCTCTCGTCGCATCGGCGGACAAACACGGCAA
AGTTTCAATTCTCGTTCGACTTTGTGCGGGTGAAGTCGTACGAGGGCACT
GAAAGCACTGGCAAGGTGCAAATCACGGGCACGGACATGAAAAACTTGAG
GGGCAGACACTTGTTGCTCGTGGAGGACTTGATTGACTCGGGGCTGACCA
TGTCGCAGCTGGTGCCGTACATTGAAAAAAATGCGGCCCCGGCCAGTGTT
CGGGTGGCGGCCCTGATGGAGAAGAGGACGCACCGGTCGTGCGGGTTCAA
GGCGGACTACGTGGCCTTCGACATCCCGGACCTCTTCGTGGTGGGCTACT
CCCTGGACTACAACGAAGCCTTTCGAGACATGCTGCACATCTGCGTGATC
AACGAGCTCGGCATCGAGAAGTTCAAGACCAACGCCTGA
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Synonyms
Publications