rna6354, rna6354 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6354
Unique Name	rna6354
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2427
Alignment location	CM002468.1:326024..328538 -

Link to JBrowse

Properties


Property Name	Value
Product	choline dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100105g4.10581.mrna
Orig protein id	gnl\|cribi\|Naga_100105g4.10581
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:326024..328538 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100105g4	gene6140	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24342.1	cds6339	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6354	rna6354-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:326024..328538-
coding sequence from alignment at CM002468.1:326024..328538-

mRNA sequence

>rna6354 ID=rna6354|Name=rna6354|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp
TCAGCGCCCGTCAAGCAGGGACGCTGCGAGGGCCATGGTGCTGCGTGGAG
GCTATCAGCGGATTGGGGAGGGAAAGGAAGACCTCCCAGTGGTGCACGAG
GATGAGGAAGACAATGTGTCGATGGTGCCACCCGCGGCAGTGGCAAGGTC
TGGTATCGCCCATGCCACAGCTCAACGAGGCGGGGTAGTGACGGCCCTGC
TCGAACACCGCCCCTTCCTGTATGGGTACAGCTTGCTCCTCCTGACCTTC
TCCGTGGCGGCTCTCGTCTATGTTCTGCAAGGGCAGCCCCCGCCGGCCCC
GAACTCGCCCTCCTCTCTCCCATTCGGAGAAAGTAGCGCCTCTGTCGCCA
CGGCGGGGCACGACGGAGCGCGGCCCACGCCCACCCTCAGGTTGGAGGGC
TACGACTTCATCGTGGTAGGCGGGGGGCCGGCAGGGAGCGTCTTGGCGAA
CAAGCTGAGCGAGGATCCGGCCGTGGAGGTCCTCCTCTTGGAGGCGGGGG
GGGCGAGTCAGGGCTGTCTAGGGGGCACGGACTACACGGCGTCGCCCCTG
ACAATGTTCGACGTGCCGCTGCTCTGGAGCACGGTGGCGCACCAGGCGGA
CTACCACTGGGACGTGGAGGGGGCCATGATTGCCAAGGTTCTGGGAGGCT
GCGGCGCGCACAATGCCATGCTCTACGTGCGCTCTCTGCCCAAGGACTTC
GAGGCGTGGAACCTGACGGATGTGGGGTGGACGTGGGAGGCCGCGCTGGC
GGAGGACATGGCGCTCGAGGACTTCGACGGCCCCCCCTCCTCCTACCACG
GCAAGGGGGGTCCGATCCGGTCCGCGCCGCCCATGTACGTGGACCAGGTC
GCGCCTTACTTTCTAGAAGCCTGCCGGATCACGGGCCTGCCCATTTCCGA
CGACTTCAATGCGCCCAATGGACGCCTGGGGGCTGCCTACTACCACTTTT
GCATCAAGAACGGGGTGCGCATGAGCGCCGCCCGTGCCTTTTTGGGCCCG
ATTATGGACGAAAGGAGCAACTTGGACATAGTTCTGAAGGCGGAGGTGAC
GCACGTGCTCATGTCGGGCGAGAAGGACGGCGTCTACACGGCCACAGGCG
TGTCGTTCGCCGCGGAAGGGGGTGACAGCCGGGAGGCGCGGCTCAAGAGC
CCGGGGAGGGGGAAAGGGAAAGGGAATGTCGTGCTGACCGCAGGCGCCAT
CCACACTCCCAAGATCCTCATGAATTCGGGCGTGGGCCCCCGAAGGAAGC
TGGAAGAGGCCGGCATCCCTGTGCTCGTCGACCTACCGGGCGTCGGGGAG
AACCTCCAGGACCACCCCTCTGTGCCCATGACCTTCACCTTGACCACGCC
CTTGGCGGGCCGGGTGGCGGCGGCGGCGGGTTCCTTCGAGGAGCTCACCG
AGTACAAGGACTGGGTGGTGGAGGGGGGGGAGATCCTCAGGGCCAAGGGC
GCGACAAGCAGGGCCGATCGAGCCGGCGGGCCGGGGCAGCAGTGGGGAGG
GGGGGGCTTCTTCCCGGGTGACCAGCCGGGGAGCCAACAGAAGGACTACA
CCATATTCGCGAGCAGTGGCTTTACTGCGGGGGCCTTCCTCAAGTCGGAC
AAAGGGAGCAAAAACCCGGCCTTCAAGGAAAACTACCCGGATCTACAGTT
GACGGTCTTCCCGCGCATCTCAGAGCCCCATCTGGTGCAGAAGCAGCAGG
AGAGCGAAGAAGCCATGGATGCGGGCGCCAGTCCGCGGGCGGCCAACCTG
TCGTCCACCCCGACCTTGCCGCCAGCGAGCAAGACCCAGCGGGGCACCAT
GCTCGTTACCATCGCGCTCTTGGACCCGCAGGCACGGTATTCCGTGGAGC
TGGATCCTCGGGACGCCATGCATGGGCCTGCACGCGTGCGGGAAGCGAAC
GTGTCGGCCTCGGAGGGCGAAGGCTTTCTCTCCGACATGGACATTGGAAA
GTTGATATGGGGGGTACGGAATGTGCGCGTGATTGCGCGGACGAGTCCCA
TGACGGAGGCGGCGCAGGAGGAGACGCTGCCTGGGCCCGATTTGGTCGAT
GAGGGTGTCCTGAAGAAGTGGGTACGGAAGAATAAATTCGTCAACTCCCA
TTGGTGTGGGAGCTGTAAAATGACCAAAGAGGAGGATCCTATGGGGGTCG
TGGACCCGCGCTTGCATGTCATGGGAGTGGATGGACTGCGAGTGGCGGAT
GCCTCAGTTTTTCCTACTATTCCGAGTGGGAACACACACAGCACGGTATT
GATGGTGGCTTCGAGGGGGGCGAAATTTATTTTGGATGAATTTTTCGGGC
GTTGAGGAGAGGTAGCGGAAGATGGAGGAGTCATACGATTTGAAGGAGGC
AACAAGGAAAACAATTGTACAGAACCTCCCAAAGAGTGCCTTCTGCCCAA
CACGTGGCCTCGATCTGTACTCGTCTT

protein sequence of rna6354

>rna6354-protein ID=rna6354-protein|Name=rna6354|organism=Nannochloropsis gaditana|type=polypeptide|length=583bp
MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFE
AWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVA
PYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPI
MDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSP
GRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGEN
LQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGA
TSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDK
GSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLS
STPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANV
SASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDE
GVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADA
SVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR

mRNA from alignment at CM002468.1:326024..328538-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6354 ID=rna6354|Name=rna6354|organism=Nannochloropsis gaditana|type=mRNA|length=2515bp|location=Sequence derived from alignment at CM002468.1:326024..328538- (Nannochloropsis gaditana)
TGACGCTGTGACTACTCGAGCACATTTCTCATCTCTTGTGGACATTTGTG
CGCCGTAGCCCATGCCACAGCTCAACGAGGCGGGGTAGTGACGGCCCTGC
TCGAACACCGCCCCTTCCTGTATGGGTACAGCTTGCTCCTCCTGACCTTC
TCCGTGGCGGCTCTCGTCTATGTTCTGCAAGGGCAGCCCCCGCCGGCCCC
GAACTCGCCCTCCTCTCTCCCATTCGGAGAAAGGTACGTCCTGTGTGTGC
TCACTCCCCGACAAAGGACGGGACAGAGGGAAATTGCCTCCGGTCTTGCC
CCAGCACGTGTTTTTCCCTCCTTTTCCACGCGTTGGTTCCTGACCCGGTC
GCGGCGGATACACACCCTAGCATGTCTCTCGCTCCACCATCCACGTGCTC
ACTTCCGTCTTTCTGGCGCAGTAGCGCCTCTGTCGCCACGGCGGGGCACG
ACGGAGCGCGGCCCACGCCCACCCTCAGGTTGGAGGGCTACGACTTCATC
GTGGTAGGCGGGGGGCCGGCAGGGAGCGTCTTGGCGAACAAGCTGAGCGA
GGATCCGGCCGTGGAGGTCCTCCTCTTGGAGGCGGGGGGGGCGAGTCAGG
GCTGTCTAGGGGGCACGGACTACACGGCGTCGCCCCTGACAATGTTCGAC
GTGCCGCTGCTCTGGAGCACGGTGGCGCACCAGGCGGACTACCACTGGGA
CGTGGAGGGGGCCATGATTGCCAAGGTTCTGGGAGGCTGCGGCGCGCACA
ATGCCATGCTCTACGTGCGCTCTCTGCCCAAGGACTTCGAGGCGTGGAAC
CTGACGGATGTGGGGTGGACGTGGGAGGCCGCGCTGGCGGAGGACATGGC
GCTCGAGGACTTCGACGGCCCCCCCTCCTCCTACCACGGCAAGGGGGGTC
CGATCCGGTCCGCGCCGCCCATGTACGTGGACCAGGTCGCGCCTTACTTT
CTAGAAGCCTGCCGGATCACGGGCCTGCCCATTTCCGACGACTTCAATGC
GCCCAATGGACGCCTGGGGGCTGCCTACTACCACTTTTGCATCAAGAACG
GGGTGCGCATGAGCGCCGCCCGTGCCTTTTTGGGCCCGATTATGGACGAA
AGGAGCAACTTGGACATAGTTCTGAAGGCGGAGGTGACGCACGTGCTCAT
GTCGGGCGAGAAGGACGGCGTCTACACGGCCACAGGCGTGTCGTTCGCCG
CGGAAGGGGGTGACAGCCGGGAGGCGCGGCTCAAGAGCCCGGGGAGGGGG
AAAGGGAAAGGGAATGTCGTGCTGACCGCAGGCGCCATCCACACTCCCAA
GATCCTCATGAATTCGGGCGTGGGCCCCCGAAGGAAGCTGGAAGAGGCCG
GCATCCCTGTGCTCGTCGACCTACCGGGCGTCGGGGAGAACCTCCAGGAC
CACCCCTCTGTGCCCATGACCTTCACCTTGACCACGCCCTTGGCGGGCCG
GGTGGCGGCGGCGGCGGGTTCCTTCGAGGAGCTCACCGAGTACAAGGACT
GGGTGGTGGAGGGGGGGGAGATCCTCAGGGCCAAGGGCGCGACAAGCAGG
GCCGATCGAGCCGGCGGGCCGGGGCAGCAGTGGGGAGGGGGGGGCTTCTT
CCCGGGTGACCAGCCGGGGAGCCAACAGAAGGACTACACCATATTCGCGA
GCAGTGGCTTTACTGCGGGGGCCTTCCTCAAGTCGGACAAAGGGAGCAAA
AACCCGGCCTTCAAGGAAAACTACCCGGATCTACAGTTGACGGTCTTCCC
GCGCATCTCAGAGCCCCATCTGGTGCAGAAGCAGCAGGAGAGCGAAGAAG
CCATGGATGCGGGCGCCAGTCCGCGGGCGGCCAACCTGTCGTCCACCCCG
ACCTTGCCGCCAGCGAGCAAGACCCAGCGGGGCACCATGCTCGTTACCAT
CGCGCTCTTGGACCCGCAGGCACGGTATTCCGTGGAGCTGGATCCTCGGG
ACGCCATGCATGGGCCTGCACGCGTGCGGGAAGCGAACGTGTCGGCCTCG
GAGGGCGAAGGCTTTCTCTCCGACATGGACATTGGAAAGTTGATATGGGG
GGTACGGAATGTGCGCGTGATTGCGCGGACGAGTCCCATGACGGAGGCGG
CGCAGGAGGAGACGCTGCCTGGGCCCGATTTGGTCGATGAGGGTGTCCTG
AAGAAGTGGGTACGGAAGAATAAATTCGTCAACTCCCATTGGTGTGGGAG
CTGTAAAATGACCAAAGAGGAGGATCCTATGGGGGTCGTGGACCCGCGCT
TGCATGTCATGGGAGTGGATGGACTGCGAGTGGCGGATGCCTCAGTTTTT
CCTACTATTCCGAGTGGGAACACACACAGCACGGTATTGATGGTGGCTTC
GAGGGGGGCGAAATTTATTTTGGATGAATTTTTCGGGCGTTGAGGAGAGG
TAGCGGAAGATGGAGGAGTCATACGATTTGAAGGAGGCAACAAGGAAAAC
AATTGTACAGAACCTCCCAAAGAGTGCCTTCTGCCCAACACGTGGCCTCG
ATCTGTACTCGTCTT

Coding sequence (CDS) from alignment at CM002468.1:326024..328538-

>rna6354 ID=rna6354|Name=rna6354|organism=Nannochloropsis gaditana|type=CDS|length=1752bp|location=Sequence derived from alignment at CM002468.1:326024..328538- (Nannochloropsis gaditana)
ATGTTCGACGTGCCGCTGCTCTGGAGCACGGTGGCGCACCAGGCGGACTA
CCACTGGGACGTGGAGGGGGCCATGATTGCCAAGGTTCTGGGAGGCTGCG
GCGCGCACAATGCCATGCTCTACGTGCGCTCTCTGCCCAAGGACTTCGAG
GCGTGGAACCTGACGGATGTGGGGTGGACGTGGGAGGCCGCGCTGGCGGA
GGACATGGCGCTCGAGGACTTCGACGGCCCCCCCTCCTCCTACCACGGCA
AGGGGGGTCCGATCCGGTCCGCGCCGCCCATGTACGTGGACCAGGTCGCG
CCTTACTTTCTAGAAGCCTGCCGGATCACGGGCCTGCCCATTTCCGACGA
CTTCAATGCGCCCAATGGACGCCTGGGGGCTGCCTACTACCACTTTTGCA
TCAAGAACGGGGTGCGCATGAGCGCCGCCCGTGCCTTTTTGGGCCCGATT
ATGGACGAAAGGAGCAACTTGGACATAGTTCTGAAGGCGGAGGTGACGCA
CGTGCTCATGTCGGGCGAGAAGGACGGCGTCTACACGGCCACAGGCGTGT
CGTTCGCCGCGGAAGGGGGTGACAGCCGGGAGGCGCGGCTCAAGAGCCCG
GGGAGGGGGAAAGGGAAAGGGAATGTCGTGCTGACCGCAGGCGCCATCCA
CACTCCCAAGATCCTCATGAATTCGGGCGTGGGCCCCCGAAGGAAGCTGG
AAGAGGCCGGCATCCCTGTGCTCGTCGACCTACCGGGCGTCGGGGAGAAC
CTCCAGGACCACCCCTCTGTGCCCATGACCTTCACCTTGACCACGCCCTT
GGCGGGCCGGGTGGCGGCGGCGGCGGGTTCCTTCGAGGAGCTCACCGAGT
ACAAGGACTGGGTGGTGGAGGGGGGGGAGATCCTCAGGGCCAAGGGCGCG
ACAAGCAGGGCCGATCGAGCCGGCGGGCCGGGGCAGCAGTGGGGAGGGGG
GGGCTTCTTCCCGGGTGACCAGCCGGGGAGCCAACAGAAGGACTACACCA
TATTCGCGAGCAGTGGCTTTACTGCGGGGGCCTTCCTCAAGTCGGACAAA
GGGAGCAAAAACCCGGCCTTCAAGGAAAACTACCCGGATCTACAGTTGAC
GGTCTTCCCGCGCATCTCAGAGCCCCATCTGGTGCAGAAGCAGCAGGAGA
GCGAAGAAGCCATGGATGCGGGCGCCAGTCCGCGGGCGGCCAACCTGTCG
TCCACCCCGACCTTGCCGCCAGCGAGCAAGACCCAGCGGGGCACCATGCT
CGTTACCATCGCGCTCTTGGACCCGCAGGCACGGTATTCCGTGGAGCTGG
ATCCTCGGGACGCCATGCATGGGCCTGCACGCGTGCGGGAAGCGAACGTG
TCGGCCTCGGAGGGCGAAGGCTTTCTCTCCGACATGGACATTGGAAAGTT
GATATGGGGGGTACGGAATGTGCGCGTGATTGCGCGGACGAGTCCCATGA
CGGAGGCGGCGCAGGAGGAGACGCTGCCTGGGCCCGATTTGGTCGATGAG
GGTGTCCTGAAGAAGTGGGTACGGAAGAATAAATTCGTCAACTCCCATTG
GTGTGGGAGCTGTAAAATGACCAAAGAGGAGGATCCTATGGGGGTCGTGG
ACCCGCGCTTGCATGTCATGGGAGTGGATGGACTGCGAGTGGCGGATGCC
TCAGTTTTTCCTACTATTCCGAGTGGGAACACACACAGCACGGTATTGAT
GGTGGCTTCGAGGGGGGCGAAATTTATTTTGGATGAATTTTTCGGGCGTT
GA

Synonyms

Publications