EWM24342.1, cds6339 (CDS) Nannochloropsis gaditana

Overview
NameEWM24342.1
Unique Namecds6339
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:326146..327897 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24342.1
Productcholine dehydrogenase
Orig transcript idgnl|cribi|Naga_100105g4.10581.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:326146..327897 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0050660flavin adenine dinucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
IPR007867GMC_OxRtase_C
Homology
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|585105735|gb|EWM24341.1| (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 1202.19 bits (3109), Expect = 0.000e+0
Identity = 583/583 (100.00%), Postives = 583/583 (100.00%), Query Frame = 0
Query:    1 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR 583
            MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR
Sbjct:  174 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR 756          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|585105736|gb|EWM24342.1| (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 1199.5 bits (3102), Expect = 0.000e+0
Identity = 583/583 (100.00%), Postives = 583/583 (100.00%), Query Frame = 0
Query:    1 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR 583
            MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR
Sbjct:    1 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDEFFGR 583          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|553179706|ref|XP_005852748.1| (glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|553192511|ref|XP_005855586.1| glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|422293478|gb|EKU20778.1| glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|422295785|gb|EKU23084.1| glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1036.17 bits (2678), Expect = 0.000e+0
Identity = 503/507 (99.21%), Postives = 506/507 (99.80%), Query Frame = 0
Query:    1 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWV 507
            MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMD+RSNLDIVLKA+VTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSR DRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKW+
Sbjct:  174 MFDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDKRSNLDIVLKAKVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRVDRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWL 680          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|298715391|emb|CBJ28002.1| (choline dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 391.734 bits (1005), Expect = 3.044e-124
Identity = 243/634 (38.33%), Postives = 348/634 (54.89%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDG--PPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIM---DERSNLDIVLKAEVTHVLM--------SGEKDG--------------VYTATGVSFAAEGGDSREARLKSPG-RGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDL---------------------QLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGE-GFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGP-------DLVDEGV-LKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFIL 577
            FD+PL+WS+V+H  + H   + A++AK LGGCG HNAMLYVR L  DF  W++   G+ + +A+      E++ G  P   +HG+GGPI ++PP ++D+VAP+FL++C   G+ +++DFN P GR GA YYHF +++GVR SAARA LG I+   D R+N+DIV  A V+ VL+          E DG              V  ATGV F  + G   +  + +PG  G+    VV+TAGA+HTPK+LM SG+G + +LE  G+  + D+P +G+NLQDH SV + + L   +   + +A    +EL  YK  V++  ++    G T               GG    D    +Q   +IF+S+G +AGAFLKS   S      ++ PD+                     QLTVFPR++EPH++                  AN+  +P  PP        MLVT+++LDP+ R  V L+  D   G   +        EGE   LS++D  KL WGV  VR IA+TSP+ E  + E  PGP       D   E V L  WV+++ + NSHWCG+ +M K  DP  VV+ R+ V+GVD L V DASV P IP+GN HSTV++VA++ A F++
Sbjct:  125 FDIPLMWSSVSHMKEEH---QNALVAKALGGCGIHNAMLYVRGLESDFAKWDVE--GFDYASAVETWKKNENYTGRGPLPEWHGRGGPIATSPPDFIDEVAPFFLDSCEGAGIRLTEDFNKPGGREGAGYYHFAVRDGVRDSAARAMLGDIVMGRDVRTNVDIVTGAHVSKVLIEDAQPVPTESEDDGDTVASLSEGKGGRTVPAATGVEFVLD-GKVEQVNIAAPGSHGRAGSAVVVTAGALHTPKLLMTSGIGDKAELEAHGLGCIADVPELGKNLQDHASVGVMYMLGPDILKLMPSAYTVAQELERYKMGVLKAFDLDFPPGVTI--------------GGVDSDDLTNGEQNAPSIFSSAGLSAGAFLKSPYESHPAGSNDSAPDIQCSCLPLIPSVPVSDSFWPKQQLTVFPRVTEPHILA----------------LANIRPSPQAPP-------MMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIER---DQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNSHWCGTARMGKASDPKSVVNERMKVIGVDNLFVGDASVLPYIPNGNVHSTVVLVATKLASFLV 712          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|635365843|emb|CCI45779.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 351.673 bits (901), Expect = 1.300e-109
Identity = 227/590 (38.47%), Postives = 296/590 (50.17%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIR-SAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDE-RSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGK---------GNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKD-YTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FD+P  W++VA    YHWD     +AK LGGCG HNAMLYVR+LP D  AWN+ +  WTWE AL   +A+EDFDGP S +HGK GPIR S    + D ++  FL AC  + +  S DFN P  RLGA YYHF I++GVR SAARA +GP++ + RSN D+ L   V  ++++                E G S E  L   G G GK           VVLTAGAI+TPKIL+ SG+GP   LE   IPV   LP VG+NLQDHP + + +           A   SF+  T ++ +                               F   +     +KD + I  S+G + GAFL S  G+  PA       +Q+T FP             + E + +   P                 Q+  +L T+ALL P AR +V+LD  D    P   R   V   EG   LS  D   L WGV+ VR +  +  + E    E +PG  +  +  L +WV +N + NSHW GS  +       GVVD RL V GVD LRVADASV P IP+GN HSTVL+VAS  A+ I ++
Sbjct:  154 FDIPFYWTSVAKNKKYHWDYPDVNVAKALGGCGIHNAMLYVRALPSDIRAWNIEN--WTWEKALKLYVAMEDFDGPSSKFHGKNGPIRTSLAASHGDDMSERFLAACDASNIRRSADFNVPEERLGAGYYHFNIRDGVRDSAARALVGPMLQQNRSNFDLQLNTIVKRIILN----------------EDGTSVEGVLVHDGNGAGKTYIVPVAKSATVVLTAGAINTPKILLLSGIGPENDLERLKIPVKRHLPRVGKNLQDHPVIGIVYE---------KADFSSFDMRTSFEKY-------------------------------FAAHNLSTCGEKDCFGILGSTGISVGAFL-SPPGALLPA-------IQITFFP-----------NHTSEPIFSNKGP-----------------QKNGLLFTVALLSPDARNTVKLDSNDHKIAP---RVNPVRIDEGSVHLSAKDARHLAWGVQVVRELVSSPSLREVTGSEIVPGDAIQSQEALTQWVVENHYRNSHWVGSASVGLSPKD-GVVDHRLRVFGVDNLRVADASVIPLIPNGNVHSTVLVVASFAAEMIKED 645          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|635365842|emb|CCI45778.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 350.903 bits (899), Expect = 2.417e-109
Identity = 228/591 (38.58%), Postives = 298/591 (50.42%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIR-SAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDE-RSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGK---------GNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKD-YTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKM-TKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FD+P  W++VA    YHWD     +AK LGGCG HNAMLYVR+LP D  AWN+ +  WTWE AL   +A+EDFDGP S +HGK GPIR S    + D ++  FL AC  + +  S DFN P  RLGA YYHF I++GVR SAARA +GP++ + RSN D+ L   V  ++++                E G S E  L   G G GK           VVLTAGAI+TPKIL+ SG+GP   LE   IPV   LP VG+NLQDHP + + +           A   SF+  T ++ +                               F   +     +KD + I  S+G + GAFL S  G+  PA       +Q+T FP             + E + +   P                 Q+  +L T+ALL P AR +V+LD  D    P   R   V   EG   LS  D   L WGV+ VR +  +  + E    E +PG  +  +  L +WV +N + NSHW GS  +    +D  GVVD RL V GVD LRVADASV P IP+GN HSTVL+VAS  A+ I ++
Sbjct:  156 FDIPFYWTSVAKNKKYHWDYPDVNVAKALGGCGIHNAMLYVRALPSDIRAWNIEN--WTWEKALKLYVAMEDFDGPSSKFHGKNGPIRTSLAASHGDDMSERFLAACDASNIRRSADFNVPEERLGAGYYHFNIRDGVRDSAARALVGPMLQQNRSNFDLQLNTIVKRIILN----------------EDGTSVEGVLVHDGNGAGKTYIVPVAKSATVVLTAGAINTPKILLLSGIGPENDLERLKIPVKRHLPRVGKNLQDHPVIGIVYE---------KADFSSFDMRTSFEKY-------------------------------FAAHNLSTCGEKDCFGILGSTGISVGAFL-SPPGALLPA-------IQITFFP-----------NHTSEPIFSNKGP-----------------QKNGLLFTVALLSPDARNTVKLDSNDHKIAP---RVNPVRIDEGSVHLSAKDARHLAWGVQVVRELVSSPSLREVTGSEIVPGDAIQSQEALTQWVVENHYRNSHWVGSASVGLSPKD--GVVDHRLRVFGVDNLRVADASVIPLIPNGNVHSTVLVVASFAAEMIKED 647          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|635365841|emb|CCI45777.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 350.903 bits (899), Expect = 2.733e-109
Identity = 227/590 (38.47%), Postives = 296/590 (50.17%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIR-SAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDE-RSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGK---------GNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKD-YTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FD+P  W++VA    YHWD     +AK LGGCG HNAMLYVR+LP D  AWN+ +  WTWE AL   +A+EDFDGP S +HGK GPIR S    + D ++  FL AC  + +  S DFN P  RLGA YYHF I++GVR SAARA +GP++ + RSN D+ L   V  ++++                E G S E  L   G G GK           VVLTAGAI+TPKIL+ SG+GP   LE   IPV   LP VG+NLQDHP + + +           A   SF+  T ++ +                               F   +     +KD + I  S+G + GAFL S  G+  PA       +Q+T FP             + E + +   P                 Q+  +L T+ALL P AR +V+LD  D    P   R   V   EG   LS  D   L WGV+ VR +  +  + E    E +PG  +  +  L +WV +N + NSHW GS  +       GVVD RL V GVD LRVADASV P IP+GN HSTVL+VAS  A+ I ++
Sbjct:  157 FDIPFYWTSVAKNKKYHWDYPDVNVAKALGGCGIHNAMLYVRALPSDIRAWNIEN--WTWEKALKLYVAMEDFDGPSSKFHGKNGPIRTSLAASHGDDMSERFLAACDASNIRRSADFNVPEERLGAGYYHFNIRDGVRDSAARALVGPMLQQNRSNFDLQLNTIVKRIILN----------------EDGTSVEGVLVHDGNGAGKTYIVPVAKSATVVLTAGAINTPKILLLSGIGPENDLERLKIPVKRHLPRVGKNLQDHPVIGIVYE---------KADFSSFDMRTSFEKY-------------------------------FAAHNLSTCGEKDCFGILGSTGISVGAFL-SPPGALLPA-------IQITFFP-----------NHTSEPIFSNKGP-----------------QKNGLLFTVALLSPDARNTVKLDSNDHKIAP---RVNPVRIDEGSVHLSAKDARHLAWGVQVVRELVSSPSLREVTGSEIVPGDAIQSQEALTQWVVENHYRNSHWVGSASVGLSPKD-GVVDHRLRVFGVDNLRVADASVIPLIPNGNVHSTVLVVASFAAEMIKED 648          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|325185695|emb|CCA20177.1| (choline dehydrogenase putative [Albugo laibachii Nc14])

HSP 1 Score: 348.977 bits (894), Expect = 1.371e-108
Identity = 227/592 (38.34%), Postives = 299/592 (50.51%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIR-SAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMDE-RSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGK---------GNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKD-YTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFP-RISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKM-TKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FD+P  W+ VA+   YHW      +AK LGGCG HNAMLYVR+LP D EAWN+ +  WTWE AL   +A+EDFDGP S++HGK GPIR S    + D ++  FL AC  + +  S DFN P  RLGA YYHF I+NG+R SAARA LGP++ + RSN ++ L   V  ++++                E G S E  L     G GK         G VVLTAGAI+TPK+L+ SG GP   L+   IPV   LP VGENLQDHP + + +           A   + +  T ++ +                               F   +    ++KD + I  ++G + GAFL S  G+  PA       +Q+T FP   SEP   +K                              +++  +L T+ALL P AR +V+LD  D    P   R   V   E    LSD D   L WGV+ VR +  +  + E    E  PG D+  E  L +WV +N   NSHW GS  + +  ED  GVVD RL V GVD LRVADAS+ P IP+GN HSTVL+VAS  A+ I ++
Sbjct:  157 FDIPFYWTRVANNEKYHWHYPDVNVAKALGGCGIHNAMLYVRALPSDIEAWNIEN--WTWEKALQLYLAMEDFDGPDSAFHGKNGPIRTSLAASHGDDMSERFLAACDASNIRRSADFNIPEERLGAGYYHFNIRNGIRDSAARALLGPMLQQNRSNFNLRLNTIVKRLILN----------------EDGTSVEGVLLHSADGAGKTYNVPVSKNGVVVLTAGAINTPKVLLLSGFGPEDDLKRLDIPVQRHLPRVGENLQDHPVIGLVYE---------KAGFSTSDMRTSFEKY-------------------------------FMAHNLSTCEEKDCFGILGTTGISVGAFL-SPPGALLPA-------IQITFFPNHTSEPIFAKKV-----------------------------SKKNGLLFTVALLSPDARNTVKLDSNDHKIAP---RVNPVRIDEDSVHLSDKDARHLAWGVQVVRELVASPSLREVTGSEITPGEDVQSEEALIQWVLENHHRNSHWVGSASVGSSPED--GVVDHRLRVFGVDNLRVADASIIPLIPNGNVHSTVLVVASYAAEMIKED 648          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|566030571|gb|ETI53482.1| (hypothetical protein, variant 4 [Phytophthora parasitica P1569])

HSP 1 Score: 334.724 bits (857), Expect = 1.649e-104
Identity = 219/594 (36.87%), Postives = 288/594 (48.48%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMD------ERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHG----------PARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FDVP  W+ VA+    HW      +AK LGGCG HNAMLYVR+LP D   W + +  WTWE AL   +++EDFDGP SSYH K G IR++PP     ++  F+EAC   G+P + DFNAP+GR GA YYHF  ++GVR SAA+AFLGPI+D      +R N  ++L   VT +  S   D V     V F    G  +  RL         G V++TAGAI+TPKILM SG+G +  L++AG+P+   LP VG NLQDHP + M F   +P    + A   S+   T  K                                         +    + +F S+G + GAFL     +         P++QLT+FPR SEPH+                              A       ++VTIALL P AR  V L   +  +           P  V E   +  E    L   D+ K+ W +  VR IA      +    E  PG ++     L  WV  N F NSHW GS  M   E+  GVVD  L V G+  LRVADASV P IP+GN HSTV+MVA+R A+ + ++
Sbjct:   17 FDVPFYWTNVANTPSLHWAYPDVNVAKALGGCGIHNAMLYVRALPSDLRRWQMEN--WTWEKALDIYLSIEDFDGPNSSYHSKQGFIRTSPPALALDMSREFIEACVELGIPRTADFNAPDGRYGAGYYHFNTRDGVRESAAKAFLGPILDSKTAESKRENFRLMLDTTVTRI--SINDDNVTEGVEVRFG--NGTGQLIRLAE------HGEVIVTAGAINTPKILMLSGLGNQDALKKAGLPLKKHLPRVGMNLQDHPVIGMVFEYKSPRVVDLKADLDSYFTATNAKH----------------------------------------TNVSSFGLFGSAGLSTGAFLIPPGAT--------LPEIQLTLFPRKSEPHMSNS---------------------------AGLDHMTEVVVTIALLHPLARSRVVLIHDENDYVDDNDIDDHLIPRVVSEIPDAKPE---HLRHGDVWKISWAIGVVREIAAKLAEKKLIGRELSPGAEITSPKDLNDWVFDNVFRNSHWVGSASMANSEEE-GVVDNHLRVFGIQNLRVADASVIPLIPNGNVHSTVVMVANRAAQILRED 519          
BLAST of EWM24342.1 vs. NCBI_GenBank
Match: gi|568056316|gb|ETM53028.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 335.88 bits (860), Expect = 1.148e-103
Identity = 219/594 (36.87%), Postives = 289/594 (48.65%), Query Frame = 0
Query:    2 FDVPLLWSTVAHQADYHWDVEGAMIAKVLGGCGAHNAMLYVRSLPKDFEAWNLTDVGWTWEAALAEDMALEDFDGPPSSYHGKGGPIRSAPPMYVDQVAPYFLEACRITGLPISDDFNAPNGRLGAAYYHFCIKNGVRMSAARAFLGPIMD------ERSNLDIVLKAEVTHVLMSGEKDGVYTATGVSFAAEGGDSREARLKSPGRGKGKGNVVLTAGAIHTPKILMNSGVGPRRKLEEAGIPVLVDLPGVGENLQDHPSVPMTFTLTTPLAGRVAAAAGSFEELTEYKDWVVEGGEILRAKGATSRADRAGGPGQQWGGGGFFPGDQPGSQQKDYTIFASSGFTAGAFLKSDKGSKNPAFKENYPDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHG----------PARVREANVSASEGEGFLSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGPDLVDEGVLKKWVRKNKFVNSHWCGSCKMTKEEDPMGVVDPRLHVMGVDGLRVADASVFPTIPSGNTHSTVLMVASRGAKFILDE 579
            FDVP  W+ VA+    HW      +AK LGGCG HNAMLYVR+LP D   W + +  WTWE AL   +++EDFDGP SSYH K G IR++PP     ++  F+EAC   G+P + DFNAP+GR GA YYHF  ++GVR SAA+AFLGPI+D      +R N  ++L   VT +  S   D V     V F  + G  +  RL         G V++TAGAI+TPKILM SG+G +  L++AG+P+   LP VG NLQDHP + M F   +P    + A   S+   T  K                                         +    + +F S+G + GAFL     +         P++QLT+FPR SEPH+                              A       ++VTIALL P AR  V L   +  +           P  V E   +  E    L   D+ K+ W +  VR IA      +    E  PG ++     L  WV  N F NSHW GS  M   E+  GVVD  L V G+  LRVADASV P IP+GN HSTV+MVA+R A+ + ++
Sbjct:  125 FDVPFYWTNVANTPSLHWAYPDVNVAKALGGCGIHNAMLYVRALPSDLRRWQMEN--WTWEKALDIYLSIEDFDGPNSSYHSKQGFIRTSPPALALDMSREFIEACVELGIPRTADFNAPDGRYGAGYYHFNTRDGVRESAAKAFLGPILDSKTAESKRENFRLMLDTTVTRI--SINDDNVTEGVEVRFGNDTG--QLIRLAE------HGEVIVTAGAINTPKILMLSGLGNQDALKKAGLPLKKHLPRVGMNLQDHPVIGMVFEYKSPRVVDLKADLDSYFTATNAKH----------------------------------------TNVSSFGLFGSAGLSTGAFLIPPGAT--------LPEIQLTLFPRKSEPHMSNS---------------------------AGLDHMTEVVVTIALLHPLARSRVVLIHDENDYVDDNDIDDHLIPRVVSEIPDAKPE---HLRHGDVWKISWAIGVVREIAAKLAEKKLIGRELSPGAEITSSKDLNDWVFDNVFRNSHWVGSASMANSEEE-GVVDNHLRVFGIQNLRVADASVIPLIPNGNVHSTVVMVANRAAQILRED 627          
The following BLAST results are available for this feature:
BLAST of EWM24342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105735|gb|EWM24341.1|0.000e+0100.00choline dehydrogenase [Nannochloropsis gaditana][more]
gi|585105736|gb|EWM24342.1|0.000e+0100.00choline dehydrogenase [Nannochloropsis gaditana][more]
gi|553179706|ref|XP_005852748.1|0.000e+099.21glucose-methanol-choline oxidoreductase [Nannochlo... [more]
gi|298715391|emb|CBJ28002.1|3.044e-12438.33choline dehydrogenase [Ectocarpus siliculosus][more]
gi|635365843|emb|CCI45779.1|1.300e-10938.47unnamed protein product [Albugo candida][more]
gi|635365842|emb|CCI45778.1|2.417e-10938.58unnamed protein product [Albugo candida][more]
gi|635365841|emb|CCI45777.1|2.733e-10938.47unnamed protein product [Albugo candida][more]
gi|325185695|emb|CCA20177.1|1.371e-10838.34choline dehydrogenase putative [Albugo laibachii N... [more]
gi|566030571|gb|ETI53482.1|1.649e-10436.87hypothetical protein, variant 4 [Phytophthora para... [more]
gi|568056316|gb|ETM53028.1|1.148e-10336.87hypothetical protein, variant 1 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6354rna6354Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications