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Properties
| Property Name | Value |
|---|
| Product | Zn(2)-C6 fungal-type DNA-binding domain protein |
| Orig transcript id | gnl|cribi|Naga_100163g1.7189.mrna |
| Orig protein id | gnl|cribi|Naga_100163g1.7189 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:281153..284952 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6337 ID=rna6337|Name=rna6337|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGATATTCTCTCTGTCCCAACTTTTTTTGGCAAAATTTTATTTCCCACA
TGTGTGTAGAGACACCTCAATAAATGCGGATCAGGTACTCATTAAAATGG
TTCAGAGCTGGGTACAAAATCCCTTTATGAGTCGCTACGGGAGATACGTG
CAGGACCACAAAAAGTTCTGTACGTCTGTCCAATCACAAGAGCGTACCCT
TATAGTAGAACACTGCACAAAGCACGGGACTTCTTTCCAGGGGGGTGGAT
GGCAGCAATCCAATTCTTCATATCCAACAATAACTCAAGTCAATTAA back to topprotein sequence of rna6337 >rna6337-protein ID=rna6337-protein|Name=rna6337|organism=Nannochloropsis gaditana|type=polypeptide|length=1111bp
MYHGFEAEYGGVGEELTYPLCREEEMDTHPALGGPLDGVSTAMSALSTSF
AATGHGSGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLA
HVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAE
LVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVG
LTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDAL
RAYVAGGSPAASLSHTASHHPLASLGPSLLPPPHLVIVVDHPPTALALTR
RALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMK
FRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLS
ATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQL
ERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQG
LPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDS
TIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVALAAGADGGGGEGGPDGG
GGGYGPGQASGGGEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRC
YALKQNCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFG
KERKESLPSRTSSPSLSTSGSTYGVAPPPASASAAKNVGGPLLSMSSHSW
SHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREES
VAGGRRGKQGQDETGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPN
PHLLSLSPPSGLIPAATMFPACPPRTAAAAVGAAAAGAAAAGAAGGSWKS
EASDKSHPSSSSSTFRSPHQASTEGPGDEERIATVSYTPPAAYYTPSAGH
SGRQAASDPPRGRGRGGGRDRGRGWRSVSHPETQGSISTSGNGSCLYPHD
QQQQHMANMQHYHTEGLGPLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQYSHQDAQGPQQPVHPPPGTNTTSTMPHIPLHTGRLTDRPSTP
RTSTNTPLPRT back to topmRNA from alignment at CM002468.1:281153..284952+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6337 ID=rna6337|Name=rna6337|organism=Nannochloropsis gaditana|type=mRNA|length=3800bp|location=Sequence derived from alignment at CM002468.1:281153..284952+ (Nannochloropsis gaditana)
GCCACTACGGTCATCGTCTGGtacttcctcccgctccggcctttttcttt
cactTTCCACTCTCAGACCAGCAGCCTTTTATCGAATGCCCTGGCCTTTT
CTCTCAGCCATGCCATCGCTGCATTTTGTGTggcctcgtcgtcgtcgccg
cAGGCCCCTTTTCCTGACATGAAATTTGTGGAAATATGTACCTAGTGGTC
GGCCGCCTTACTTGTTCTGTTGGTTTTCATATTCGAGAGtaacctccctc
cacgctgaCGTCGAACGACTCATTTTCTGGGTATAGGGAGCACCGGCGTC
GTGCGGGGTGCGGCTGTGAGGGCACGACAGCTGGGCGTGGCGATTAGGTg
tcggggaaaaaaggggggatcATAGTAAGGATTGGGGAGCTCAAGTGCCA
TTCAGTCACAAAGTAGCGAAGAAAGGACGGAAAGCGTCCATATCGGGGCG
AAGTCAAGCACGCAACAAATGTACCATGGCTTCGAGGCCGAGTACGGCGG
GGTTGGCGAGGAGCTGACATATCCTCTGtgcagggaagaagaaatggaca
CACACCCCGCGCTGGGTGGTCCCTTAGATGGGGTTTCAACAGCCATGTCC
GCTTTGAGCACTAGCTTCGCAGCGACGGGTCATGGGTCAGGGCCGGCCCA
CGAGGGCCACGCTAGCGGTGCTTTTGCTCCCCCGTCCACGGAACATGCCG
GCGTCATGTGCGCAGCTCCCATGGCCATGGGCACGGCAGACGCTAGCTCA
GTCCATCTACCCTTGGCCCATGTGGGAAGCGGGAGTAGTGGCAACAGCAG
ATACAGTGGGAGTGGCGGCGACAGCGGGAGCGTGGGGACTGGTGGCCTCC
ATCCATCCTTCTCGAGCGGccttcattcctcctccgggggggcaggcggg
ggcatgCCGAATGCGGAGTTGGTTCGCGTTCGCGTCGACACTTCTGGAAA
GAAATTGCTGAGGGAAGCTGCCCTGCTGACCCGCCTGGCCGAGATACTGC
TTCCAAAGCAGGAACGAGGGagcgaagaggggaggggctgggcggagggg
gatgcGGGGGCGGTCGGTTTGACAGAATGGTTGGCAGGAGAGCTTGGAAA
CGACACGAGGCGTGCTCGCTTTTTACTCGCCATgtcgggggagagggatg
gagaagaggaggcggtggagcgaggaggggatggagggaaggcgcTCAGT
CGAATACGCGACGCACTCCGAGCCTACGTCGCAGGCGGGTCGCCTGCtgc
atccctttcccacacagccagccaccacccccttgcctccttgggccctt
ccctcctcccgccgccccacTTGGTCATCGTCGTCGACCACCCTCCCACA
GCGCTCGCCTTGACCCGCCGCGCCTTGGAGGCGGGGCTTCGAGTCTCTGT
GGCCCGCAATGCCCTCCACGTGCTGAGCGAGGTGATCGAGCGCGGGGAAA
CCTATTTTCACGGCTTGGTTCTGGAGGTCGACTCGCCCATTATGAGCGGG
CTGGAGGCCGCCATGAAGTTCCGAgggctcccctcccccctggtggtgct
gggagagggggagagaggtgcggagcaaggagggcccGCGGCCCAGACAG
CTGGGgcggggcaaggaagggagggaaggcgaagaggactagaaggtagg
ggagggagcatgcTCTCGGCGACAGCGAAGCtgatgatggtgatggtggt
gaaTGGCAGCCGACACGCGAACTACTCGGGCTTCGAGGCGCACGCCCTGT
CGGCGGGGGTGGATTATGTGGCACAGGAGTTCGAAGAGCTCTCCTTCGAG
AATTTGAAGAAGCAGTTGGAACGGAGGTGCGATGTtgggatgagggaggc
cgCAGGGAGGGCTCTCGAGGATGTGGcacagggcggggaagggagggcgg
ggggcgaggagggagggaggaggggtagagGAAAGGCTGGCAAGCCGAGC
AGCGGGCTCAGGCAGGGTCTCCCCTTGGCCCGATTGCCGTCGTTCACATG
GACGGGCGCCCTGCCTTTATCGAGGGGGGAGTCAGCCTCGCTCTCTCGAT
CCAGCAGTGAGACGATCAGGTCAGGCAGACCCGCCTGGAGCGCCGGGGAG
ACGTCTGCGATGGATTCAACCATCATGGGGCTCAGCCCTTGGGAGGACCT
CTCTGTTCCCCGCGGAGGTAGCCTCTTGCCCATGGCCCACTCCCATACGG
CGGCTGCCCACGTGGCCCTGGCTGCTGGGgccgacgggggagggggggaa
ggagggcccgacggaggggggggcggatATGGGCCGGGACAGGCGagtgg
gggcggggaggtggcggctCGGGAGCTCCGGCGGAAGGACAAGCGCGTGC
GACGTGCCTGTATGTATTGCCACGGGAAGAAACTGTCGTGTTCCTTCCAC
AGGCCTTGCGACCGTTGCTACGCCTTGAAACAGAACTGCGTGGAATACGT
GCCAAAACAGCGGACTTTAGACTCCACGGGGAACGTCTactgcccgcccg
ccccagGTCCTGCCGCCAGGGCGAAGAGCGAGGATGGGTGGGGCGCGGAA
CAAGACGGGGTCttcgggaaggagaggaaggagtctTTACCCTCTCGGAC
CAGtagtccctccctctctacctctgGCAGCACCTACGGggtcgccccgc
ccccggcctcTGCCAGCGCGGCGAAAAATGTGGGAGGCCCCCTCTTGTCC
ATGTCCTCGCATTCTTGGTCGCATGTGGGGGATAACAGCGGGgtaggagg
cgggaggagtggTGTCAGCGAGGCCGGGACTCGGGCGAACAGCAGCGGGA
ACCAGAGCAGCGGGTCGAAACGGAGGCGCAAGGGGGTCGAAGGGGGCCGT
TTCCAGCGGGAAGAAAGCGTCgcgggcggcaggaggggaaagcagggcCA
GGACGAAACGGGAAGTGGGACCGGCCTGGGAGCAAACGAGGCTGAGGAAG
CAAGGGGGCGCACAGACCTGgtcatctcccccccctcctccgcttcctcc
gccccgtcctgcccgaacccccacctcctctccctctccccccccagtGG
CCTCATTCCAGCCGCCACCATGTTCCCTGCCTGTCCACCGCGCACcgcag
cggcggcggtgggggcggcggcggcgggagcggcggcggcgggagcggcT
GGAGGATCTTGGAAATCGGAGGCATCGGACAAGAgccacccttcttcctc
gtcctccacattCAGATCCCCTCACCAAGCTTCCACTGAGGGTCCCGGAG
ACGAAGAGCGGATTGCCACCGTTTCCTACACCCCGCCCGCTGCTTACTac
actccctccgccggccaCTCGGGGCGTCAGGCAGCGAGTGATCCCccgcg
aggacgagggcggggcggaggaagggatagagggcgcgggtggcggagTG
TCAGTCACCCGGAGACCCAGGGTAGCATCAGCACGAGCGGAAATGGCAGC
TGTTTATACCCTCAcgaccagcagcagcagcatatGGCAAACATGCAGCA
CTACCACACGGAGGGTCTAGGGCcactgcagcagcagcagcagcagcagc
agcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcaacagcagcagcagcagcagcagtactCCCA
CCAAGACGCACAGGGACCGCAGCAACCGgtgcaccccccccccggcacca
ACACCACAAGTACTATGCCCCACATCCCACTGCACACAGGCCGCTTGACC
GACCGGCCGAGCACGCCTCGTACCTCCACCAATACGCCTCTCCCCCGTAC
back to topCoding sequence (CDS) from alignment at CM002468.1:281153..284952+ >rna6337 ID=rna6337|Name=rna6337|organism=Nannochloropsis gaditana|type=CDS|length=3332bp|location=Sequence derived from alignment at CM002468.1:281153..284952+ (Nannochloropsis gaditana)
ATGTACCATGGCTTCGAGGCCGAGTACGGCGGGGTTGGCGAGGAGCTGAC
ATATCCTCTGtgcagggaagaagaaatggacaCACACCCCGCGCTGGGTG
GTCCCTTAGATGGGGTTTCAACAGCCATGTCCGCTTTGAGCACTAGCTTC
GCAGCGACGGGTCATGGGTCAGGGCCGGCCCACGAGGGCCACGCTAGCGG
TGCTTTTGCTCCCCCGTCCACGGAACATGCCGGCGTCATGTGCGCAGCTC
CCATGGCCATGGGCACGGCAGACGCTAGCTCAGTCCATCTACCCTTGGCC
CATGTGGGAAGCGGGAGTAGTGGCAACAGCAGATACAGTGGGAGTGGCGG
CGACAGCGGGAGCGTGGGGACTGGTGGCCTCCATCCATCCTTCTCGAGCG
GccttcattcctcctccgggggggcaggcgggggcatgCCGAATGCGGAG
TTGGTTCGCGTTCGCGTCGACACTTCTGGAAAGAAATTGCTGAGGGAAGC
TGCCCTGCTGACCCGCCTGGCCGAGATACTGCTTCCAAAGCAGGAACGAG
GGagcgaagaggggaggggctgggcggagggggatgcGGGGGCGGTCGGT
TTGACAGAATGGTTGGCAGGAGAGCTTGGAAACGACACGAGGCGTGCTCG
CTTTTTACTCGCCATgtcgggggagagggatggagaagaggaggcggtgg
agcgaggaggggatggagggaaggcgcTCAGTCGAATACGCGACGCACTC
CGAGCCTACGTCGCAGGCGGGTCGCCTGCtgcatccctttcccacacagc
cagccaccacccccttgcctccttgggcccttccctcctcccgccgcccc
acTTGGTCATCGTCGTCGACCACCCTCCCACAGCGCTCGCCTTGACCCGC
CGCGCCTTGGAGGCGGGGCTTCGAGTCTCTGTGGCCCGCAATGCCCTCCA
CGTGCTGAGCGAGGTGATCGAGCGCGGGGAAACCTATTTTCACGGCTTGG
TTCTGGAGGTCGACTCGCCCATTATGAGCGGGCTGGAGGCCGCCATGAAG
TTCCGAgggctcccctcccccctggtggtgctgggagagggggagagagg
tgcggagcaaggagggcccGCGGCCCAGACAGCTGGGgcggggcaaggaa
gggagggaaggcgaagaggactagaaggtaggggagggagcatgcTCTCG
GCGACAGCGAAGCtgatgatggtgatggtggtgaaTGGCAGCCGACACGC
GAACTACTCGGGCTTCGAGGCGCACGCCCTGTCGGCGGGGGTGGATTATG
TGGCACAGGAGTTCGAAGAGCTCTCCTTCGAGAATTTGAAGAAGCAGTTG
GAACGGAGGTGCGATGTtgggatgagggaggccgCAGGGAGGGCTCTCGA
GGATGTGGcacagggcggggaagggagggcggggggcgaggagggaggga
ggaggggtagagGAAAGGCTGGCAAGCCGAGCAGCGGGCTCAGGCAGGGT
CTCCCCTTGGCCCGATTGCCGTCGTTCACATGGACGGGCGCCCTGCCTTT
ATCGAGGGGGGAGTCAGCCTCGCTCTCTCGATCCAGCAGTGAGACGATCA
GGTCAGGCAGACCCGCCTGGAGCGCCGGGGAGACGTCTGCGATGGATTCA
ACCATCATGGGGCTCAGCCCTTGGGAGGACCTCTCTGTTCCCCGCGGAGG
TAGCCTCTTGCCCATGGCCCACTCCCATACGGCGGCTGCCCACGTGGCCC
TGGCTGCTGGGgccgacgggggagggggggaaggagggcccgacggaggg
gggggcggatATGGGCCGGGACAGGCGagtgggggcggggaggtggcggc
tCGGGAGCTCCGGCGGAAGGACAAGCGCGTGCGACGTGCCTGTATGTATT
GCCACGGGAAGAAACTGTCGTGTTCCTTCCACAGGCCTTGCGACCGTTGC
TACGCCTTGAAACAGAACTGCGTGGAATACGTGCCAAAACAGCGGACTTT
AGACTCCACGGGGAACGTCTactgcccgcccgccccagGTCCTGCCGCCA
GGGCGAAGAGCGAGGATGGGTGGGGCGCGGAACAAGACGGGGTCttcggg
aaggagaggaaggagtctTTACCCTCTCGGACCAGtagtccctccctctc
tacctctgGCAGCACCTACGGggtcgccccgcccccggcctcTGCCAGCG
CGGCGAAAAATGTGGGAGGCCCCCTCTTGTCCATGTCCTCGCATTCTTGG
TCGCATGTGGGGGATAACAGCGGGgtaggaggcgggaggagtggTGTCAG
CGAGGCCGGGACTCGGGCGAACAGCAGCGGGAACCAGAGCAGCGGGTCGA
AACGGAGGCGCAAGGGGGTCGAAGGGGGCCGTTTCCAGCGGGAAGAAAGC
GTCgcgggcggcaggaggggaaagcagggcCAGGACGAAACGGGAAGTGG
GACCGGCCTGGGAGCAAACGAGGCTGAGGAAGCAAGGGGGCGCACAGACC
TGgtcatctcccccccctcctccgcttcctccgccccgtcctgcccgaac
ccccacctcctctccctctccccccccagtGGCCTCATTCCAGCCGCCAC
CATGTTCCCTGCCTGTCCACCGCGCACcgcagcggcggcggtgggggcgg
cggcggcgggagcggcggcggcgggagcggcTGGAGGATCTTGGAAATCG
GAGGCATCGGACAAGAgccacccttcttcctcgtcctccacattCAGATC
CCCTCACCAAGCTTCCACTGAGGGTCCCGGAGACGAAGAGCGGATTGCCA
CCGTTTCCTACACCCCGCCCGCTGCTTACTacactccctccgccggccaC
TCGGGGCGTCAGGCAGCGAGTGATCCCccgcgaggacgagggcggggcgg
aggaagggatagagggcgcgggtggcggagTGTCAGTCACCCGGAGACCC
AGGGTAGCATCAGCACGAGCGGAAATGGCAGCTGTTTATACCCTCAcgac
cagcagcagcagcatatGGCAAACATGCAGCACTACCACACGGAGGGTCT
AGGGCcactgcagcagcagcagcagcagcagcagcagcagcagcagcagc
agcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
caacagcagcagcagcagcagcagtactCCCACCAAGACGCACAGGGACC
GCAGCAACCGgtgcaccccccccccggcaccaACACCACAAGTACTATGC
CCCACATCCCACTGCACACAGGCCGCTTGACCGACCGGCCGAGCACGCCT
CGTACCTCCACCAATACGCCTCTCCCCCGTAC back to top
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