EWM24351.1, cds6322 (CDS) Nannochloropsis gaditana

Overview
NameEWM24351.1
Unique Namecds6322
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:281621..284952 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24351.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100163g1.7189.mrna
GbkeyCDS
End range.
End range284952
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:281621..284952 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0000160phosphorelay signal transduction system
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011006CheY-like_superfamily
IPR001789Sig_transdc_resp-reg_receiver
IPR011989ARM-like
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of EWM24351.1 vs. NCBI_GenBank
Match: gi|585105747|gb|EWM24351.1| (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 2216.81 bits (5743), Expect = 0.000e+0
Identity = 1111/1111 (100.00%), Postives = 1111/1111 (100.00%), Query Frame = 0 
Query:    1 MYHGFEAEYGGVGEELTYPLCREEEMDTHPALGGPLDGVSTAMSALSTSFAATGHGSGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPLASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQGLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVALAAGADGGGGEGGPDGGGGGYGPGQASGGGEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYGVAPPPASASAAKNVGGPLLSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQDETGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPACPPRTAAAAVGAAAAGAAAAGAAGGSWKSEASDKSHPSSSSSTFRSPHQASTEGPGDEERIATVSYTPPAAYYTPSAGHSGRQAASDPPRGRGRGGGRDRGRGWRSVSHPETQGSISTSGNGSCLYPHDQQQQHMANMQHYHTEGLGPLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYSHQDAQGPQQPVHPPPGTNTTSTMPHIPLHTGRLTDRPSTPRTSTNTPLPRT 1111
            MYHGFEAEYGGVGEELTYPLCREEEMDTHPALGGPLDGVSTAMSALSTSFAATGHGSGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPLASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQGLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVALAAGADGGGGEGGPDGGGGGYGPGQASGGGEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYGVAPPPASASAAKNVGGPLLSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQDETGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPACPPRTAAAAVGAAAAGAAAAGAAGGSWKSEASDKSHPSSSSSTFRSPHQASTEGPGDEERIATVSYTPPAAYYTPSAGHSGRQAASDPPRGRGRGGGRDRGRGWRSVSHPETQGSISTSGNGSCLYPHDQQQQHMANMQHYHTEGLGPLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYSHQDAQGPQQPVHPPPGTNTTSTMPHIPLHTGRLTDRPSTPRTSTNTPLPRT
Sbjct:    1 MYHGFEAEYGGVGEELTYPLCREEEMDTHPALGGPLDGVSTAMSALSTSFAATGHGSGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPLASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQGLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVALAAGADGGGGEGGPDGGGGGYGPGQASGGGEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYGVAPPPASASAAKNVGGPLLSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQDETGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPACPPRTAAAAVGAAAAGAAAAGAAGGSWKSEASDKSHPSSSSSTFRSPHQASTEGPGDEERIATVSYTPPAAYYTPSAGHSGRQAASDPPRGRGRGGGRDRGRGWRSVSHPETQGSISTSGNGSCLYPHDQQQQHMANMQHYHTEGLGPLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYSHQDAQGPQQPVHPPPGTNTTSTMPHIPLHTGRLTDRPSTPRTSTNTPLPRT 1111
[Close]
BLAST of EWM24351.1 vs. NCBI_GenBank
Match: gi|553187041|ref|XP_005854538.1| (phytanoyl- dioxygenase domain-containing 1-like protein [Nannochloropsis gaditana CCMP526] >gi|422294520|gb|EKU21820.1| phytanoyl- dioxygenase domain-containing 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 437.573 bits (1124), Expect = 1.989e-134
Identity = 220/225 (97.78%), Postives = 223/225 (99.11%), Query Frame = 0 
Query:  656 NCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYGVAPPPASASAAKNVGGPLLSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQDETGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPACPPRTAAAA 880
            NCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYG+APPPASASAAKNVGGP+LSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQD+TGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPAC PRTAA A
Sbjct:  435 NCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDGVFGKERKESLPSRTSSPSLSTSGSTYGIAPPPASASAAKNVGGPILSMSSHSWSHVGDNSGVGGGRSGVSEAGTRANSSGNQSSGSKRRRKGVEGGRFQREESVAGGRRGKQGQDDTGSGTGLGANEAEEARGRTDLVISPPSSASSAPSCPNPHLLSLSPPSGLIPAATMFPACSPRTAAPA 659
[Close]
BLAST of EWM24351.1 vs. NCBI_GenBank
Match: gi|553187038|ref|XP_005854537.1| (Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP526] >gi|422294519|gb|EKU21819.1| Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.252 bits (970), Expect = 1.612e-114
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0 
Query:   43 MSALSTSFAATGHGSGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERG 236
            MSALSTSFAATGHG GPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERG
Sbjct:    1 MSALSTSFAATGHGPGPAHEGHASGAFAPPSTEHAGVMCAAPMAMGTADASSVHLPLAHVGSGSSGNSRYSGSGGDSGSVGTGGLHPSFSSGLHSSSGGAGGGMPNAELVRVRVDTSGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAGAVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERG 194
The following BLAST results are available for this feature:
BLAST of EWM24351.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105747|gb|EWM24351.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein, p... [more]
gi|553187041|ref|XP_005854538.1|1.989e-13497.78phytanoyl- dioxygenase domain-containing 1-like pr... [more]
gi|553187038|ref|XP_005854537.1|1.612e-11499.48Fe-Fe hydrogenase [Nannochloropsis gaditana CCMP52... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6337rna6337Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications