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Properties
| Property Name | Value |
|---|
| Product | radical sam domain protein |
| Orig transcript id | gnl|cribi|Naga_100163g5.7196.mrna |
| Orig protein id | gnl|cribi|Naga_100163g5.7196 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:275865..278633 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6332 ID=rna6332|Name=rna6332|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp
ATGATGCTGTGGCGGGCGTCTGGCCGGCTTTGTCCTCGAAGTCTCTTTAC
GACCCCGACGGCTGCGTCCCGGGGAGGTAAGTTGCCATCCAGACACCACC
AGCAACGCTGGCTGGCTCAATGGTCAATCGAGACTGAACACCACCATAAA
TATGAGGACCCTGCCAAAATCATCGACGAAGGTCTGATCAATCGCTTGTT
GGAGGAGACAAAAGACAAGGCAAAAGATGCCGCATGCGTCAAAGCTATTC
TGGTGGCTGCTCAAGAAAGGGCCCGGCTTCAGGCCATGCCCCCAGGGCAC
CCTACCGCAGACCCGCCCCAGAATGAATTTGTTCAAGGACTCACCCTGGA
GGAGGCAGCTACACTCTTAAACGTCGATTCGGGGAACAAAGACATAATGC
AGCTTTTGTATGATGCTGCCTTGAATGTGAAGCAACAGATTTACGGCAAC
CGTATTGTGCTCTTTGCACCTGTTTACTTGGCCAACTGGTGTGTAAATAC
GTGCCAGTACTGTGCCTTCCGAGGGGCCAATAAGCAGATGCAGCGAAGCA
TGCTCACCATGGACGAGTTGCGACAAGAAGTGGAAGCCTTGGAGGCGATC
GGACACAAACGATTGCTGCTTCTGACCGGCGAGCACCCCAAGTATTCGTT
TGACCGGTTTCTCGAGGCAGTCCAAGTGGTTGGCACCGTCAAGACCCCTA
ATCCGTGTGGGGAGATTCGGCGGATCAACGTGGAGATTCCCTCCCTCTCC
GTCTCCGACATGCGACGCCTCAAGGCTACTCAATACATTGGTACCTACAC
GCTCTTCCAGGAAACCTACCACCGTGACACTTTTCGGAAAATGCATCCCG
GTGGACCCAAGAGCGATTACAACCACAGGATCCTGACCATGGACCGGGCA
CAGTTGGGTGGCCTGGATGACGTGGGAATCGGGGCGCTCTTCGGCTTGGC
CGACTACCGATTCGAGGTGTTGGGCCTCCTCATGCATGCCCACCACCTCG
ATCGCACCTACGGCACGGGACCCCACACTATCTCTATCCCCCGCATGCAG
CCGGCCCTGAACGCCCCGGCAGCGGAGCACATCCCCCTGCCGGTTCACGA
CGACGATTTTAAGAAATTGGTGGCTGTCATTCGGTGTGCGGTTCCCTACA
CGGGCATGATCCTATCCACCCGGGAGTCAGCTCAGATACGTCGGGAGCTT
TTACGCTTGGGCATCTCTCAAATCAGCGCCGGGTCACGCACAGACGTGGG
GGCCTATCACCGCGATACCTCTTGCGACGCCGCCCCCTTCATTAGCAACA
CCGCCGGGACGAGCGGCAACGGATACAGGGCAGGGCGGCCGGCCAAGTCG
CAACTACCTCCTCCTGCCACTCTGGATGCATCGCGCAAGGAAGAGGAGGA
AGACACGGAGGAATATAAATTGAGACGTGGACAATTCTGTTTACAGGATC
ATCGTCCTCTCGACACGGTCATTAAAGACCTGCTTCACGACGGATTCATC
CCCTCCTTTTGCACGGCTTGTTATCGGAAGGGGCGCACCGGGGCAGCATT
TATGAAAATCGCAAAGAGTGGGCGCATTCAGGACTTTTGCCAGCCGAATG
CTTTACTCAGTCTGCAGGAGTACATGGAGGATTATGCCAGTCCTCAAACC
AAGGCGATAGGCGCAGAAGTCATACATCGCGAGAGTCAGCTCATGAGCGA
CAACGCCAAGCGCGTGGTCGTAGCGATGGCATGTGTCATTGATATAGACG
AGAAGATCAGTAGGCATATTGTACAGAAGAAAGGGGTGATATTTGGGAGA
GATAACCAGACACAGAATTGA back to topprotein sequence of rna6332 >rna6332-protein ID=rna6332-protein|Name=rna6332|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MGMNQIVVNPSLSHLSSPLLSCLFAAAYFGTKVYARGIVEFSNVCTKDCF
YCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINF
MLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSS
VYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGF
QVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLW
LEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDP
EGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERR
VRMAGKDLLLDGGWHDPPHFVRPSVE back to topmRNA from alignment at CM002468.1:275865..278633+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6332 ID=rna6332|Name=rna6332|organism=Nannochloropsis gaditana|type=mRNA|length=2769bp|location=Sequence derived from alignment at CM002468.1:275865..278633+ (Nannochloropsis gaditana)
tccgtcttcaACCCACCTTGTCTTTTGTCTCCTCCAACAAGCGATTGATC
AGACCTTCGTCGATGATTTTGGCAGGGTCCTCATATTTATGGTGGTGTTC
AGTCTCGATTGACCATTGAGCCAGCCAGCGTTGCTGGTGGTGTCTGGATG
GCAACTTACCTCCCCGGGACGCAGCCGTCGGGGTCGTAAAGAGACTTCGA
GGACAAAGCCGGCCAGACGCCCGCCACAGCATCATAGCAGGGACCGGCAC
ACGCTCAACTATCCTGAATGAGAGGCCGTAGGAAAGATGAGAGGGAAAAC
GCGTGGCTGTCTCGCTTGAAAGCGGAACAAACGCTTCTTGAATTGCGTCT
CTCCTTCTGCTTCAACTTTGTCAGGAAGAACTGAACCAGGTCTTCAAAGT
CACTTTCGCATTCTCACACATGCAACAATCACTCACGCCAGGCAACGGCA
TGCTTCTACCCCGAACACTGCATTATTTTCCTGCAAACGTGGCGGTGCTT
TCGGTCTGTGGCAGCTGCCTAGGTTTCCATACCAAACAGATCCTTCGAGC
CCGACACTTTTGGACATGCTCCTGCCCTCGCGCCTTGGGCCGCCAACGAC
CACTGTCAGTCACAATACGCTATGCCAGCGACAAAGGCACTGCGAGAGGG
GGTGCTGAGCCTCTTTGGTCACCCTTGAAGGACTTCCTTGGCCTCGATCG
TTTGGACACAGGACAAAAGCTGGACATCTCTAGGCGGCAGTTGACAGAAC
TCTTGACAACGAATGATAGGACTTTAATCAAGTCCATGTACGCTGTGGCT
GAGGCTGCGACGAGTACGTTCTTGCGATGTTCTATTTGTGTTTTTCAAAT
ATGTACTGAAATTTTCTTAAACCGGAAGGCGCAAACCCGTGAGGATAGGG
TGAAAGCTCAATTCAGTCGAGTTCTAGGCTAAAAGCCTTCATAATAGCAC
GTTCACGGGATCCATTCACAAATTATCGCAGACTTGAAAAATTAAGTTAT
GGGTATGAACCAAATCGTTGTGAATCCATCACTTTCACATCTCTCGTCCC
CACTTTTGTCCTGTCTGTTCGCAGCGGCATATTTCGGCACCAAAGTGTAC
GCCCGAGGCATCGTCGAATTTAGCAACGTCTGCACCAAGGATTGCTTTTA
CTGCGGTATTCGCAAGCACACGGTAAGGGTCGGCCCTATCATGGAACAGG
AGAGGCGGACGCATTGGAGACATGGGGATTGCAACCTGTCTTCGGCCCAG
CGTTCCTCCCCCGATCCTTCCTCACGCTCTCCCTGGCCACGGATCACCCG
CAGAAGGTACACCGCTACACGATGACAAAAGAGGAGATTTTGGCCTGTGC
GGAATTTGCCTATTCTCAGGGAATGGGCACACTGATGCTGCAATCGGGAG
AGCTGCCTTCCCCTGAGAGAATCAAGTGAGTACGACGGGAGCGGGTACCC
AGTGGGACAAGGCCGCGGCGATGATGAGAAGGTCCAAGCGAGATTCTAGG
CGTAAATCATGCCGCCCTGACATGGGTTccaccccacccaccccAGCTTT
ATGCTAGATGTGGTGCGGGCCATACGACGGCGCACAATGGACCTGGCATG
CGagtctcccccctttccctcagccGGTCCAAACCAGCGtgactttcctt
cccagcgCGGTCTCGccgtcgccctctccttgggTGAGCTCCCGTCGTCA
GTCTACCAGGCCTtcttggaggcaggggcctcCCGCTACCTGTTGCGGAT
CGAAACCAGCAATCCTACTTTGTACACCAGGCTCCACCCTGCCTCCCACT
CTTTCCAGGCACGTCGCAAATGCCTGGAAGAACTGCAGAGAATCGGCTTC
CAAGTGGGGACGGGCGTGATGGTTGGGGTGCCGTTCCAGACcgtggagga
ccaggccaacgatctccttttcttcaaggtatgtgcccccccccccccgg
tcctcccccccttcctccagcatACTGCTTGACGCTGCATCGCCCCTTCT
TGCGCCCtaacccttcccctcgttcACAGGAACTCGACCCCGACATGATC
GGACTCGGCCCGTACATAGTGCAGTCACAAACGCCGCTGGGCAAGCTCTG
GCtggaggagcacggggaggaatCCGCAGCGAAACAGGAAGCAAACCGAG
TGGCGCTTCTGGAGAGGACCACACGCATGTACGCCCTGGCCCGAATCATG
CTGGGCAACGTCAACATcgccgccaccacggcactggaggccttggatcc
tgaggggagggagctcgCGTTGCGGCGGGGGGCGAATGTGGTCATGCCCA
TCATCACGCCACAGCGCTTGCGAGGTAGGCAGGGACCAAAGCTTGTCAGT
GGTGACGTATAGGATCTTACGGCAAGCGCTCTGTGGCTTCATCCAGCCGC
TACGTATCTAGAAACTTTTCTCGTGCTCAcaacctctccttcccaccgtg
tacttttctccccccccccttaggCCAGTATGAAATCTATGAAAACAAAC
CAGGCATCGATCAGGATGCCTTGGATAGCACCGCGTGTCTGGAGCGGCGG
GTGCgaatggcggggaaggaTTTGCTGCTGGATGGAGGCTGGCATGACCC
ACCCCATTTTGTTAGACCCTCTGTAGAATAGTGTGCGAGACAAAAGCCCG
AACAGACACGAGACCAAAGCGAAAACGACTTCTTTTATTTCTTCAATTGT
TTCCTTGCATACAAAAGCTTTAGAGAGCCATGACCAATAGCCATAGAAGA
GAAAAATCAAGTTTGCGTT back to topCoding sequence (CDS) from alignment at CM002468.1:275865..278633+ >rna6332 ID=rna6332|Name=rna6332|organism=Nannochloropsis gaditana|type=CDS|length=5655bp|location=Sequence derived from alignment at CM002468.1:275865..278633+ (Nannochloropsis gaditana)
ATGGGTATGAACCAAATCGTTGTGAATCCATCACTTTCACATCTCTCGTC
CCCACTTTTGTCCTGTCTGTTCGCAGCGGCATATTTCGGCACCAAAGTGT
ACGCCCGAGGCATCGTCGAATTTAGCAACGTCTGCACCAAGGATTGCTTT
TACTGCGGTATTCGCAAGCACACGAAGGTACACCGCTACACGATGACAAA
AGAGGAGATTTTGGCCTGTGCGGAATTTGCCTATTCTCAGGGAATGGGCA
CACTGATGCTGCAATCGGGAGAGCTGCCTTCCCCTGAGAGAATCAACTTT
ATGCTAGATGTGGTGCGGGCCATACGACGGCGCACAATGGACCTGGCATG
CGagtctcccccctttccctcagccGGTCCAAACCAGCGtgactttcctt
cccagcgCGGTCTCGccgtcgccctctccttgggTGAGCTCCCGTCGTCA
GTCTACCAGGCCTtcttggaggcaggggcctcCCGCTACCTGTTGCGGAT
CGAAACCAGCAATCCTACTTTGTACACCAGGCTCCACCCTGCCTCCCACT
CTTTCCAGGCACGTCGCAAATGCCTGGAAGAACTGCAGAGAATCGGCTTC
CAAGTGGGGACGGGCGTGATGGTTGGGGTGCCGTTCCAGACcgtggagga
ccaggccaacgatctccttttcttcaagGAACTCGACCCCGACATGATCG
GACTCGGCCCGTACATAGTGCAGTCACAAACGCCGCTGGGCAAGCTCTGG
CtggaggagcacggggaggaatCCGCAGCGAAACAGGAAGCAAACCGAGT
GGCGCTTCTGGAGAGGACCACACGCATGTACGCCCTGGCCCGAATCATGC
TGGGCAACGTCAACATcgccgccaccacggcactggaggccttggatcct
gaggggagggagctcgCGTTGCGGCGGGGGGCGAATGTGGTCATGCCCAT
CATCACGCCACAGCGCTTGCGAGgCCAGTATGAAATCTATGAAAACAAAC
CAGGCATCGATCAGGATGCCTTGGATAGCACCGCGTGTCTGGAGCGGCGG
GTGCgaatggcggggaaggaTTTGCTGCTGGATGGAGGCTGGCATGACCC
ACCCCATTTTGTTAGACCCTCTGTAGAATAGATGGGTATGAACCAAATCG
TTGTGAATCCATCACTTTCACATCTCTCGTCCCCACTTTTGTCCTGTCTG
TTCGCAGCGGCATATTTCGGCACCAAAGTGTACGCCCGAGGCATCGTCGA
ATTTAGCAACGTCTGCACCAAGGATTGCTTTTACTGCGGTATTCGCAAGC
ACACGAAGGTACACCGCTACACGATGACAAAAGAGGAGATTTTGGCCTGT
GCGGAATTTGCCTATTCTCAGGGAATGGGCACACTGATGCTGCAATCGGG
AGAGCTGCCTTCCCCTGAGAGAATCAACTTTATGCTAGATGTGGTGCGGG
CCATACGACGGCGCACAATGGACCTGGCATGCGagtctcccccctttccc
tcagccGGTCCAAACCAGCGtgactttccttcccagcgCGGTCTCGccgt
cgccctctccttgggTGAGCTCCCGTCGTCAGTCTACCAGGCCTtcttgg
aggcaggggcctcCCGCTACCTGTTGCGGATCGAAACCAGCAATCCTACT
TTGTACACCAGGCTCCACCCTGCCTCCCACTCTTTCCAGGCACGTCGCAA
ATGCCTGGAAGAACTGCAGAGAATCGGCTTCCAAGTGGGGACGGGCGTGA
TGGTTGGGGTGCCGTTCCAGACcgtggaggaccaggccaacgatctcctt
ttcttcaagGAACTCGACCCCGACATGATCGGACTCGGCCCGTACATAGT
GCAGTCACAAACGCCGCTGGGCAAGCTCTGGCtggaggagcacggggagg
aatCCGCAGCGAAACAGGAAGCAAACCGAGTGGCGCTTCTGGAGAGGACC
ACACGCATGTACGCCCTGGCCCGAATCATGCTGGGCAACGTCAACATcgc
cgccaccacggcactggaggccttggatcctgaggggagggagctcgCGT
TGCGGCGGGGGGCGAATGTGGTCATGCCCATCATCACGCCACAGCGCTTG
CGAGgCCAGTATGAAATCTATGAAAACAAACCAGGCATCGATCAGGATGC
CTTGGATAGCACCGCGTGTCTGGAGCGGCGGGTGCgaatggcggggaagg
aTTTGCTGCTGGATGGAGGCTGGCATGACCCACCCCATTTTGTTAGACCC
TCTGTAGAATAGATGGGTATGAACCAAATCGTTGTGAATCCATCACTTTC
ACATCTCTCGTCCCCACTTTTGTCCTGTCTGTTCGCAGCGGCATATTTCG
GCACCAAAGTGTACGCCCGAGGCATCGTCGAATTTAGCAACGTCTGCACC
AAGGATTGCTTTTACTGCGGTATTCGCAAGCACACGAAGGTACACCGCTA
CACGATGACAAAAGAGGAGATTTTGGCCTGTGCGGAATTTGCCTATTCTC
AGGGAATGGGCACACTGATGCTGCAATCGGGAGAGCTGCCTTCCCCTGAG
AGAATCAACTTTATGCTAGATGTGGTGCGGGCCATACGACGGCGCACAAT
GGACCTGGCATGCGagtctcccccctttccctcagccGGTCCAAACCAGC
GtgactttccttcccagcgCGGTCTCGccgtcgccctctccttgggTGAG
CTCCCGTCGTCAGTCTACCAGGCCTtcttggaggcaggggcctcCCGCTA
CCTGTTGCGGATCGAAACCAGCAATCCTACTTTGTACACCAGGCTCCACC
CTGCCTCCCACTCTTTCCAGGCACGTCGCAAATGCCTGGAAGAACTGCAG
AGAATCGGCTTCCAAGTGGGGACGGGCGTGATGGTTGGGGTGCCGTTCCA
GACcgtggaggaccaggccaacgatctccttttcttcaagGAACTCGACC
CCGACATGATCGGACTCGGCCCGTACATAGTGCAGTCACAAACGCCGCTG
GGCAAGCTCTGGCtggaggagcacggggaggaatCCGCAGCGAAACAGGA
AGCAAACCGAGTGGCGCTTCTGGAGAGGACCACACGCATGTACGCCCTGG
CCCGAATCATGCTGGGCAACGTCAACATcgccgccaccacggcactggag
gccttggatcctgaggggagggagctcgCGTTGCGGCGGGGGGCGAATGT
GGTCATGCCCATCATCACGCCACAGCGCTTGCGAGgCCAGTATGAAATCT
ATGAAAACAAACCAGGCATCGATCAGGATGCCTTGGATAGCACCGCGTGT
CTGGAGCGGCGGGTGCgaatggcggggaaggaTTTGCTGCTGGATGGAGG
CTGGCATGACCCACCCCATTTTGTTAGACCCTCTGTAGAATAGATGGGTA
TGAACCAAATCGTTGTGAATCCATCACTTTCACATCTCTCGTCCCCACTT
TTGTCCTGTCTGTTCGCAGCGGCATATTTCGGCACCAAAGTGTACGCCCG
AGGCATCGTCGAATTTAGCAACGTCTGCACCAAGGATTGCTTTTACTGCG
GTATTCGCAAGCACACGAAGGTACACCGCTACACGATGACAAAAGAGGAG
ATTTTGGCCTGTGCGGAATTTGCCTATTCTCAGGGAATGGGCACACTGAT
GCTGCAATCGGGAGAGCTGCCTTCCCCTGAGAGAATCAACTTTATGCTAG
ATGTGGTGCGGGCCATACGACGGCGCACAATGGACCTGGCATGCGagtct
cccccctttccctcagccGGTCCAAACCAGCGtgactttccttcccagcg
CGGTCTCGccgtcgccctctccttgggTGAGCTCCCGTCGTCAGTCTACC
AGGCCTtcttggaggcaggggcctcCCGCTACCTGTTGCGGATCGAAACC
AGCAATCCTACTTTGTACACCAGGCTCCACCCTGCCTCCCACTCTTTCCA
GGCACGTCGCAAATGCCTGGAAGAACTGCAGAGAATCGGCTTCCAAGTGG
GGACGGGCGTGATGGTTGGGGTGCCGTTCCAGACcgtggaggaccaggcc
aacgatctccttttcttcaagGAACTCGACCCCGACATGATCGGACTCGG
CCCGTACATAGTGCAGTCACAAACGCCGCTGGGCAAGCTCTGGCtggagg
agcacggggaggaatCCGCAGCGAAACAGGAAGCAAACCGAGTGGCGCTT
CTGGAGAGGACCACACGCATGTACGCCCTGGCCCGAATCATGCTGGGCAA
CGTCAACATcgccgccaccacggcactggaggccttggatcctgagggga
gggagctcgCGTTGCGGCGGGGGGCGAATGTGGTCATGCCCATCATCACG
CCACAGCGCTTGCGAGgCCAGTATGAAATCTATGAAAACAAACCAGGCAT
CGATCAGGATGCCTTGGATAGCACCGCGTGTCTGGAGCGGCGGGTGCgaa
tggcggggaaggaTTTGCTGCTGGATGGAGGCTGGCATGACCCACCCCAT
TTTGTTAGACCCTCTGTAGAATAGATGGGTATGAACCAAATCGTTGTGAA
TCCATCACTTTCACATCTCTCGTCCCCACTTTTGTCCTGTCTGTTCGCAG
CGGCATATTTCGGCACCAAAGTGTACGCCCGAGGCATCGTCGAATTTAGC
AACGTCTGCACCAAGGATTGCTTTTACTGCGGTATTCGCAAGCACACGAA
GGTACACCGCTACACGATGACAAAAGAGGAGATTTTGGCCTGTGCGGAAT
TTGCCTATTCTCAGGGAATGGGCACACTGATGCTGCAATCGGGAGAGCTG
CCTTCCCCTGAGAGAATCAACTTTATGCTAGATGTGGTGCGGGCCATACG
ACGGCGCACAATGGACCTGGCATGCGagtctcccccctttccctcagccG
GTCCAAACCAGCGtgactttccttcccagcgCGGTCTCGccgtcgccctc
tccttgggTGAGCTCCCGTCGTCAGTCTACCAGGCCTtcttggaggcagg
ggcctcCCGCTACCTGTTGCGGATCGAAACCAGCAATCCTACTTTGTACA
CCAGGCTCCACCCTGCCTCCCACTCTTTCCAGGCACGTCGCAAATGCCTG
GAAGAACTGCAGAGAATCGGCTTCCAAGTGGGGACGGGCGTGATGGTTGG
GGTGCCGTTCCAGACcgtggaggaccaggccaacgatctccttttcttca
agGAACTCGACCCCGACATGATCGGACTCGGCCCGTACATAGTGCAGTCA
CAAACGCCGCTGGGCAAGCTCTGGCtggaggagcacggggaggaatCCGC
AGCGAAACAGGAAGCAAACCGAGTGGCGCTTCTGGAGAGGACCACACGCA
TGTACGCCCTGGCCCGAATCATGCTGGGCAACGTCAACATcgccgccacc
acggcactggaggccttggatcctgaggggagggagctcgCGTTGCGGCG
GGGGGCGAATGTGGTCATGCCCATCATCACGCCACAGCGCTTGCGAGgCC
AGTATGAAATCTATGAAAACAAACCAGGCATCGATCAGGATGCCTTGGAT
AGCACCGCGTGTCTGGAGCGGCGGGTGCgaatggcggggaaggaTTTGCT
GCTGGATGGAGGCTGGCATGACCCACCCCATTTTGTTAGACCCTCTGTAG
AATAG back to top
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