EWM24358.1, cds6317 (CDS) Nannochloropsis gaditana

Overview
NameEWM24358.1
Unique Namecds6317
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:276863..277036 +
Alignment locationCM002468.1:277168..277289 +
Alignment locationCM002468.1:277411..277792 +
Alignment locationCM002468.1:277894..278188 +
Alignment locationCM002468.1:278338..278495 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24358.1
Productradical sam domain protein
Orig transcript idgnl|cribi|Naga_100163g5.7196.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:276863..277036 +
CM002468.1supercontigCM002468.1:277168..277289 +
CM002468.1supercontigCM002468.1:277411..277792 +
CM002468.1supercontigCM002468.1:277894..278188 +
CM002468.1supercontigCM002468.1:278338..278495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0051188cofactor biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:00515394 iron, 4 sulfur cluster binding
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR005244FO_synthase_su2-like
IPR007197rSAM
IPR006638Elp3/MiaB/NifB
Homology
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|585105754|gb|EWM24358.1| (radical sam domain protein [Nannochloropsis gaditana])

HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MGMNQIVVNPSLSHLSSPLLSCLFAAAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 376
            MGMNQIVVNPSLSHLSSPLLSCLFAAAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE
Sbjct:    1 MGMNQIVVNPSLSHLSSPLLSCLFAAAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 376          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|585105753|gb|EWM24357.1| (radical sam domain protein [Nannochloropsis gaditana])

HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:   27 AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 376
            AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE
Sbjct:  133 AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 482          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|470487651|ref|XP_004344718.1| (radical SAM domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440799932|gb|ELR20975.1| radical SAM domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 392.119 bits (1006), Expect = 7.349e-131
Identity = 188/343 (54.81%), Postives = 247/343 (72.01%), Query Frame = 0
Query:   28 YFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 370
            YFG K+Y RGIVEFSNVCTKDC+YCGIRKH +V RY+M+KEEI+ CA FAY  G G+LMLQSGELP+ +R+ F++D ++ ++R T++   E         N       + L VA+SLGEL   ++++  EAGA RYLLRIE+SNP LY +LHPA HS+  R +CL EL  +GFQVGTGVM+G+P QT+ D A DLLFFK +D DMIG+GPYI Q  TPLGKLW EE+      +       L   +T+M ALARI+ G+VNIAATTAL+A++P+GRE+AL +GAN++MPI+TP++ R  Y++YE KP ID+ A +  +CL+ RV+ AGK+L L   W DP HF
Sbjct:  121 YFGKKIYFRGIVEFSNVCTKDCYYCGIRKHIQVKRYSMSKEEIVNCAIFAYESGYGSLMLQSGELPTDKRLAFLVDTIKEVKRVTIEKDKERNGVKEGVEN-------KSLGVAISLGELTKDMFRSLREAGAHRYLLRIESSNPDLYAKLHPADHSWHRRVECLRELNELGFQVGTGVMIGLPGQTLGDLAQDLLFFKSMDIDMIGMGPYICQKDTPLGKLWQEENSNLDTKRYNEK---LFRLSTKMVALARIICGDVNIAATTALQAINPQGREVALNQGANMLMPILTPRKYREDYQLYEGKPCIDEGAEECRSCLKNRVQWAGKELTLH-DWGDPQHF 452          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|577705671|gb|AHH85810.1| (FeFe-hydrogenase assembly protein [Tetraselmis sp. GSL018])

HSP 1 Score: 366.311 bits (939), Expect = 2.444e-120
Identity = 192/368 (52.17%), Postives = 250/368 (67.93%), Query Frame = 0
Query:   16 SSPLLSCLFAAA------YFGTKVYARGIVEFSNVCTKDCFYCGIRKHT-KVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTM--DLACESPPFPSAGPNQRDFPSQR--GLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEE--HGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 370
            +S L   LFA A      +FG KVY RGIVEFSNVC  DC YCGIRK+   VHRY+M+KEEIL  A  A+   MGTLMLQSGEL +P R++F+ DVVR IRR+T+  DL  ++    +   NQ +  +    GL VALS+GELP    Q    +GASRYL+RIETSNP L+ R+HP S + ++R +CL  ++  G Q+GTG+MVG+P QT++D ANDL+FFK +D DMIG+GPYI +  T     W+ E  +       ++A+  ++++ TTRM ALARI LGNVNIAATT+L+A++P GRELAL RGANVVMPI+TP   R QY++Y  KP +   A    +CL+ R+   GK+LL DG W DPPHF
Sbjct:  123 NSELNDALFAHAESVSRRFFGDKVYQRGIVEFSNVCENDCGYCGIRKYQPNVHRYSMSKEEILDVAMKAFDLKMGTLMLQSGELKTPRRLSFVNDVVREIRRKTILADLMRKNDLTEALLTNQENLQTAESIGLCVALSIGELPLEELQRLRASGASRYLVRIETSNPELFARIHPKSQTLESRVECLLNIKAAGLQLGTGLMVGLPGQTLKDLANDLVFFKNVDADMIGMGPYIPEDDT-----WVAEDFNHVNPGIDKKAHLESMVQLTTRMNALARITLGNVNIAATTSLQAINPLGRELALSRGANVVMPILTPTEQRAQYQLYPGKPCVSHGADGCASCLKMRIASVGKELLTDGSWSDPPHF 485          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|551580404|gb|AGA37362.2| (mitochondrial hydrogenase maturation protein, partial [Mastigamoeba balamuthi])

HSP 1 Score: 361.688 bits (927), Expect = 1.715e-119
Identity = 183/349 (52.44%), Postives = 241/349 (69.05%), Query Frame = 0
Query:   29 FGTKVYARGIVEFSNVCTKDCFYCGIRKH---TKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPAS--HSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVR 372
            +G KVY RGIVEFSNVC K+C YCGIR+      + RYTM   EI+ CA +A  Q +GT+MLQSGE+  P RIN+++DV+  IR R+++                D   ++G+AVALS+GE    VY+   EAG  R+LLRIE+SNP LY  LHPA   H+++ R  CL +L R+GFQ+GTGVM+G+P Q+  D A D+LFFKE+D DMIG+GPY+VQ+ TP GK+W E HG E   ++E NR  LL  ++RM AL RI LG+ NIAATTAL+A+ P GREL LRRGAN++MPI+TP + R +Y++YE KP I + A ++ A L RRV +AGK+ + D  W DPPHF R
Sbjct:   84 YGNKVYLRGIVEFSNVCEKNCNYCGIRREMPKQALPRYTMPDNEIVECALWAQKQRLGTVMLQSGEVSHPSRINWLIDVITQIRSRSIEA---------------DTVHKKGVAVALSVGEQSYDVYRRLFEAGGRRFLLRIESSNPLLYRSLHPADGMHTWEKRMSCLRDLGRVGFQLGTGVMIGLPQQSNWDLAGDILFFKEIDADMIGMGPYVVQADTPTGKVWTELHGRED--REEYNR-RLLALSSRMIALTRITLGDANIAATTALQAIHPTGRELCLRRGANLMMPILTPTKYREEYQLYEGKPSIHEAAEETHASLVRRVHVAGKE-VADDVWGDPPHFTR 413          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|290976728|ref|XP_002671091.1| ([Fe] hydrogenase maturation protein [Naegleria gruberi] >gi|284084657|gb|EFC38347.1| [Fe] hydrogenase maturation protein [Naegleria gruberi])

HSP 1 Score: 360.533 bits (924), Expect = 1.227e-117
Identity = 179/347 (51.59%), Postives = 240/347 (69.16%), Query Frame = 0
Query:   27 AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHP--ASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGE-ESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 370
            + +G+KVY RGI+EFSNVC KDC YCGIRKH +V RYTM KEEI+  A +AY    G++MLQSGEL +  RI+ ++DV+R I++RT             GP + +    +GL +AL +GEL    YQ   +AGA RYLLRIETSNP LY++LHP   +H ++ R+KCLE L  IG+Q GTGVM+ +P QTV+D A+DLLFF+++  DMIG+GPYIVQ  TP+GK+W+E++G    A K+E NRV L     +M ALARI++   NI+ATTAL+A++P GRE+AL  GAN+VMPIITP + R  Y++Y+ KP ID    +   CL  RV+ + K L+LD  W DP  +
Sbjct:  182 SIYGSKVYFRGIIEFSNVCQKDCNYCGIRKHMQVPRYTMPKEEIIEQAIWAYENHFGSIMLQSGELNTEGRISMLVDVIREIKKRT----------GGGGPGEWN----KGLGIALGVGELSRESYQRLYDAGAHRYLLRIETSNPELYSKLHPNDENHVWEERKKCLETLMDIGYQTGTGVMIMIPNQTVQDLADDLLFFRKIGADMIGMGPYIVQEGTPIGKIWMEQYGHMNEAEKKEYNRV-LFRLALKMTALARILIPEANISATTALQAINPAGREIALSSGANMVMPIITPTKYRVNYQLYQGKPCIDDTKEECKRCLTDRVKWSNKQLILD-EWGDPISY 512          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|577705673|gb|AHH85811.1| (FeFe-hydrogenase assembly protein [Tetraselmis sp. GSL018])

HSP 1 Score: 367.851 bits (943), Expect = 1.967e-115
Identity = 192/373 (51.47%), Postives = 253/373 (67.83%), Query Frame = 0
Query:   16 SSPLLSCLFAAA------YFGTKVYARGIVEFSNVCTKDCFYCGIRKHT-KVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTM--DLACESPPFPSAGPNQRDFPSQR--GLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGE--ESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSV 375
            +S L   LFA A      +FG KVY RGIVEFSNVC  DC YCGIRK+   VHRY+M+KEEIL  A  A+   MGTLMLQSGEL +P R++F+ DVVR IRR+T+  DL  ++    +   NQ +  +    GL VALS+GELP    Q    +GASRYL+RIETSNP L+ R+HP S + ++R +CL  ++  G Q+GTG+MVG+P QT++D ANDL+FFK +D DMIG+GPYI +  T     W+ E          ++A+  ++++ TTRM ALARI LGNVNIAATT+L+A++P GRELAL RGANVVMPI+TP   R QY++Y  KP +   A   ++CL+ R+   GK+LL DG W DPPHF + ++
Sbjct:  123 NSELNDALFAHAESVSRRFFGDKVYQRGIVEFSNVCENDCGYCGIRKYQPNVHRYSMSKEEILDVAMKAFDLKMGTLMLQSGELKTPRRLSFVNDVVREIRRKTILADLMRKNDLTEALLTNQENLQTAESIGLCVALSIGELPLEELQRLRASGASRYLVRIETSNPELFARIHPKSQTLESRVECLLNIKAAGLQLGTGLMVGLPGQTLKDLANDLVFFKNVDADMIGMGPYIPEDDT-----WVAEDFNRVNPGIDKKAHLESMVQLTTRMNALARITLGNVNIAATTSLQAINPLGRELALSRGANVVMPILTPTEQRAQYQLYPGKPCVSHGADGCSSCLKMRIASVGKELLTDGSWSDPPHFKKAAL 490          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|1039092110|gb|ANM86878.1| (HydE [Stygiella incarcerata] >gi|1039092157|gb|ANM86739.1| HydE [Stygiella incarcerata])

HSP 1 Score: 337.421 bits (864), Expect = 9.670e-110
Identity = 174/372 (46.77%), Postives = 240/372 (64.52%), Query Frame = 0
Query:    4 NQIVVNPSLSHLSSPLLSCLFAAAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTK-VHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPAS--HSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVR 372
            ++ VV+   +H  S            G KV+ RGIVEFSNVC K+C YCGIR+  + V RYTM+KEEIL CA + +  G G++MLQSGE  +   +NF+LDV+++IR+ +++L               D   ++GL VALS+GE    VYQ   +AGA RYLLRIETSNP LY+ LHP    H F+ R +C+ +L+++GFQ GTGVM+G+P Q+  D ANDL+FF++ D DMIG+GPY+VQ  TP G  +L        ++ +  +  L   + RM ALARI L +VN+ ATTAL+A+ P GRE+AL  GAN++MPI+TP R R +Y++YE KP +D+ A +   CL  RV+ AGK++ L   W DP HF R
Sbjct:   75 DKAVVDGMFAHAES------VQQKNIGNKVHFRGIVEFSNVCRKNCNYCGIRRDMEDVERYTMSKEEILECARWCFQNGYGSIMLQSGERTNRAHLNFLLDVIKSIRKESLEL---------------DVEQRQGLGVALSVGEQSKDVYQELFDAGAHRYLLRIETSNPHLYSILHPRDGLHEFEIRLQCIRDLKQVGFQTGTGVMIGLPGQSCRDLANDLMFFRDEDVDMIGMGPYVVQEHTPTGIEYL--------SRPQITKEELFSLSLRMLALARITLRDVNLPATTALQAIVPNGREIALSCGANMLMPILTPTRYRKEYQLYEGKPCVDEGADECRDCLSNRVKWAGKEIGL-WEWGDPKHFFR 416          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|552838007|ref|XP_005849486.1| (hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis] >gi|307109146|gb|EFN57384.1| hypothetical protein CHLNCDRAFT_142788 [Chlorella variabilis])

HSP 1 Score: 347.436 bits (890), Expect = 5.872e-108
Identity = 188/378 (49.74%), Postives = 242/378 (64.02%), Query Frame = 0
Query:   16 SSPLLSCLFAAA------YFGTKVYARGIVEFSNVCTKDCFYCGIRKHTK-VHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPF-PSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPAS----------HSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSV 375
            S  L + LFA A      +FG  VY RGIVEFSNVC  DC YCGIRKH +   RYTM ++E++  A++A+   +GTLMLQSGEL +P+R+ ++ DVV A++ RT  L  E     P A P      +  GL VALS+GELP   YQ   +AGA RYLLRIE+SNP LY  +HP +          H ++ R +CL +L+ IGF +GTGVMVG+P QT+ D A D++FF++L  DMIG+GPYI ++ TP+  +W ++ G     K   + + L   TTRM ALARI LGNVNIAATTAL+A+D  GRE+ALRRGANV+MPI+TP + R  Y +YE KP I   A +   CL  R+ M  K  L  G W DPP F R SV
Sbjct:   71 SKVLDNALFAHAESVTGRFFGRDVYYRGIVEFSNVCENDCGYCGIRKHQRRARRYTMPRDEVVEVADWAFRHRLGTLMLQSGELNTPQRMKYLTDVVAAVKERTRALDAEQRLVDPEALPKD---AAGVGLCVALSVGELPREQYQQLKDAGADRYLLRIESSNPQLYASIHPPAQARASGPARFHKWENRTRCLRDLKDIGFMIGTGVMVGLPGQTLRDLAGDIMFFRDLGADMIGMGPYITEAGTPVADMWEQQFGHVDKKKHMQDMLTL---TTRMNALARITLGNVNIAATTALQAIDAVGREVALRRGANVLMPILTPTKYREHYTLYEGKPCITDTAEECQKCLNARLAMVDKK-LKPGVWGDPPSF-RDSV 440          
BLAST of EWM24358.1 vs. NCBI_GenBank
Match: gi|1057354255|ref|WP_068714525.1| ([FeFe] hydrogenase H-cluster radical SAM maturase HydE [Orenia metallireducens] >gi|1046955249|gb|OCL28450.1| [FeFe] hydrogenase H-cluster radical SAM maturase HydE [Orenia metallireducens])

HSP 1 Score: 319.316 bits (817), Expect = 9.222e-104
Identity = 157/350 (44.86%), Postives = 218/350 (62.29%), Query Frame = 0
Query:   26 AAYFGTKVYARGIVEFSNVCTKDCFYCGIRK-HTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPS 374
            A Y G KVY RG++EFSNVC K+C YCGIRK + KV R+TMT+EEIL  A++AY    G+++LQSGE    E + F+ ++++ I+                        S   L + LSLGE     YQ + + GA RYLLRIE+SN  LY  LHP  H F+ R +CL E++ IG+QVGTGVM+G P QT+ED  +DLLFFKE D DM+G+GPY++   TP  K              E  +   L    +M A+ R+++ ++NIAATTAL+AL+P GRE+AL+ GAN++MPIIT ++ R +Y++YENKP ID++A D   CL  RV   G +++  G W D PH+ + +
Sbjct:   41 AEYIGQKVYYRGLIEFSNVCVKNCNYCGIRKDNNKVERFTMTEEEILDRAKWAYENNYGSIVLQSGERSDKEFVEFVDNIIKKIKE----------------------LSNNELGITLSLGEQSKETYQRWYDLGAHRYLLRIESSNKELYNSLHPDDHDFKRRLECLAEMKEIGYQVGTGVMIGFPGQTIEDLVDDLLFFKENDIDMVGMGPYVLHEDTPTAK---------DVEDNELIKTRNLNWGLKMVAILRLLMKDINIAATTALQALNPVGREMALKAGANILMPIITHRKYRTEYQLYENKPCIDEEASDCKNCLAARVGTVGDEIIY-GEWGDSPHYFKRT 358          
The following BLAST results are available for this feature:
BLAST of EWM24358.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105754|gb|EWM24358.1|0.000e+0100.00radical sam domain protein [Nannochloropsis gadita... [more]
gi|585105753|gb|EWM24357.1|0.000e+0100.00radical sam domain protein [Nannochloropsis gadita... [more]
gi|470487651|ref|XP_004344718.1|7.349e-13154.81radical SAM domain containing protein [Acanthamoeb... [more]
gi|577705671|gb|AHH85810.1|2.444e-12052.17FeFe-hydrogenase assembly protein [Tetraselmis sp.... [more]
gi|551580404|gb|AGA37362.2|1.715e-11952.44mitochondrial hydrogenase maturation protein, part... [more]
gi|290976728|ref|XP_002671091.1|1.227e-11751.59[Fe] hydrogenase maturation protein [Naegleria gru... [more]
gi|577705673|gb|AHH85811.1|1.967e-11551.47FeFe-hydrogenase assembly protein [Tetraselmis sp.... [more]
gi|1039092110|gb|ANM86878.1|9.670e-11046.77HydE [Stygiella incarcerata] >gi|1039092157|gb|ANM... [more]
gi|552838007|ref|XP_005849486.1|5.872e-10849.74hypothetical protein CHLNCDRAFT_142788 [Chlorella ... [more]
gi|1057354255|ref|WP_068714525.1|9.222e-10444.86[FeFe] hydrogenase H-cluster radical SAM maturase ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6332rna6332Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications