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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100246g11.10061.mrna |
| Orig protein id | gnl|cribi|Naga_100246g11.10061 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:231029..233550 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6315 ID=rna6315|Name=rna6315|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
GCCACGGGACAAAAATCATAGGACACGCACAGCCGTAGAGAGCTCCTTTG
CCCTCTAACATGTCGTTTTCAATATACCTCGGGTCGTCATGTGTTATTTC
TATGTACATTTATCTCCTTCCCCCGTCCCGACCTCATTCTTATCAAGACA
CTTGTCATGACATACATCGTTTAGGCTCGAGCGCATGGGCGGATGGGACA
TGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGAC
GACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGC
GCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGA
AGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGAC
CGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGA
TGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCG
ACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACG
ACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTG
TTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCG
TCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGC
TGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAG
GAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCC
CGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAA
GAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCG
GCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTC
GCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGGAGCCGCCTCGCGT
TCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGTCCCTCCCTTGT
CCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGCGGGGTCCCTGG
GCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGCAGGGATGTTTT
GGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGGAGAGGCGTGTA
CCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTTGTCGCTGAATC
TCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAAGTCCAGAGGTC
GTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAGAAGGAAGGGAG
GAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGGGAGGGCGATGC
TTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGGTGCTGACGGCG
GTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTACTGGTTGTACT
GGAGCGACTACGGGCTGCATTGGAGGGCGGCGGTGATCTGATGCATTCTT
TCAAGCTCGCTGCATTAATAAATGCGCTTCAAAGTAAGTACGGCCCTCAA
ATGCAACTTTTTCCCACCGTGATGCGTCACATTATCTCAATATGTGAGGA
GGGGGAGGGAAGGGACGGTGCAAAAGGGGGCTGCAGCAACAGTTGGAGCA
AGAATCACAAAAATGGCGGTGGGGCAACATTGATACGCAACACCCTACGT
AAAGTTATCCTGTCAATATCCGAATAAAAACTCAAAACTTGAAAATGTGA
ATTGGAAAAATGTGCAGTTGGAGTAGGATAAATCAATTTTTCCGTGATGT
TCACAACAAAGAGTAGCCTTGTTTACCTTTAATTTTTCGTAGGATAACGT
GGTCAATTTTCAGTATCGGTCACAAGATAAAATGAGGCAACAAATGGAAA
TGAAATGACGCCCAT back to topprotein sequence of rna6315 >rna6315-protein ID=rna6315-protein|Name=rna6315|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQ
AFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSL
LLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADP
RRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWI
PCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGL
VRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQ
PAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGW
DLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLE
HGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVGV
ADQGGRQGHRCAQREHRDFDGLQKAGA back to topmRNA from alignment at CM002468.1:231029..233550- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6315 ID=rna6315|Name=rna6315|organism=Nannochloropsis gaditana|type=mRNA|length=2522bp|location=Sequence derived from alignment at CM002468.1:231029..233550- (Nannochloropsis gaditana)
GCCACGGGACAAAAATCATAGGACACGCACAGCCGTAGAGAGCTCCTTTG
CCCTCTAACATGTCGTTTTCAATATACCTCGGGTCGTCATGTGTTATTTC
TATGTACATTTATCTCCTTCCCCCGTCCCGACCTCATTCTTATCAAGACA
CTTGTCATGACATACATCGTTTAGGCTCGAGCGCATGGGCGGATGGGACA
TGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGAC
GACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGC
GCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGA
AGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGAC
CGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGA
TGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCG
ACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACG
ACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTG
TTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCG
TCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGC
TGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAG
GAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCC
CGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAA
GAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCG
GCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTC
GCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGTGAGCCCGGCGCGT
CCCTCGGACAGTCAGCTTGCCTGCACAGACGTTCGTATCATTGCTTTTGT
TGTCTTCCTTGTGTCTTTTGGCCTCCCTTTTCCCAAAGAGTGCTCCTGAG
GGGTCGATTTGTTCCTTCCTTGCCCCCCTCCTCGGCCGCCCGGTCCCAGA
TCATTCTTCATCGACCGCCGCGCCTCGCTCTCTTTTCACCTGACTTTCTT
GGTGATATCCCAACTCGCTCCTCTCTCCCTCTCACCCATTCCTTTCTTTC
ATTCACCTTCCCTCTCCCCCTGCCTCCCTTTCTCTGGCCTGCCCAGGGAG
CCGCCTCGCGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGT
CCCTCCCTTGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGC
GGGGTCCCTGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGC
AGGGATGTTTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGG
AGAGGCGTGTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTT
GTCGCTGAATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAA
GTCCAGAGGTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAG
AAGGAAGGGAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGG
GAGGGCGATGCTTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGG
TGCTGACGGCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTA
CTGGTTGTACTGGAGCGACTACGGGCTGCATTGGAGGTGGGTGTTGCGGA
CCAGGGGGGGCGGCAGGGTCACAGGTGTGCTCAGCGGGAACACAGAGACT
TCGATGGTCTTCAGAAGGCAGGAGCATAGCTGCATAGGGGAAGAGAGATA
CTGTATTGATTAGATTTTATGCCTTTCCACACATGTATATGTGGTGATTG
GGAGGATTTCGGTCCATGCAAATGCTCATGCATCCTTGCAACCTTTTCCC
ACATGCTTTTTATTTTTTACTCTTGACATCAGGGCGGCGGTGATCTGATG
CATTCTTTCAAGCTCGCTGCATTAATAAATGCGCTTCAAAGTAAGTACGG
CCCTCAAATGCAACTTTTTCCCACCGTGATGCGTCACATTATCTCAATAT
GTGAGGAGGGGGAGGGAAGGGACGGTGCAAAAGGGGGCTGCAGCAACAGT
TGGAGCAAGAATCACAAAAATGGCGGTGGGGCAACATTGATACGCAACAC
CCTACGTAAAGTTATCCTGTCAATATCCGAATAAAAACTCAAAACTTGAA
AATGTGAATTGGAAAAATGTGCAGTTGGAGTAGGATAAATCAATTTTTCC
GTGATGTTCACAACAAAGAGTAGCCTTGTTTACCTTTAATTTTTCGTAGG
ATAACGTGGTCAATTTTCAGTATCGGTCACAAGATAAAATGAGGCAACAA
ATGGAAATGAAATGACGCCCAT back to topCoding sequence (CDS) from alignment at CM002468.1:231029..233550- >rna6315 ID=rna6315|Name=rna6315|organism=Nannochloropsis gaditana|type=CDS|length=2868bp|location=Sequence derived from alignment at CM002468.1:231029..233550- (Nannochloropsis gaditana)
GGAGCCGCCTCGCGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCT
CCGTCCCTCCCTTGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGC
CGGCGGGGTCCCTGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATC
AAGCAGGGATGTTTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGG
GAGGAGAGGCGTGTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGG
ACTTGTCGCTGAATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGA
AAAAGTCCAGAGGTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAA
TGAGAAGGAAGGGAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGC
ATGGGAGGGCGATGCTTTACCCTGTGTGTGAGTGGACAGATGTAACACTG
CCGGTGCTGACGGCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGAC
CGTACTGGTTGTACTGGAGCGACTACGGGCTGCATTGGAGGTGGGTGTTG
CGGACCAGGGGGGGCGGCAGGGTCACAGGTGTGCTCAGCGGGAACACAGA
GACTTCGATGGTCTTCAGAAGGCAGGAGCATAGATGGGCGGATGGGACAT
GAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGACG
ACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGCG
CCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGAA
GGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGACC
GCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGAT
GACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCGA
CCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACGA
CCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTGT
TCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCGT
CATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGCT
GTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAGG
AAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCCC
GCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAAG
AGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCGG
CTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTCG
CCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGGAGCCGCCTCGCGTT
CGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGTCCCTCCCTTGTC
CTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGCGGGGTCCCTGGG
CTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGCAGGGATGTTTTG
GAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGGAGAGGCGTGTAC
CTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTTGTCGCTGAATCT
CGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAAGTCCAGAGGTCG
TGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAGAAGGAAGGGAGG
AGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGGGAGGGCGATGCT
TTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGGTGCTGACGGCGG
TTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTACTGGTTGTACTG
GAGCGACTACGGGCTGCATTGGAGGTGGGTGTTGCGGACCAGGGGGGGCG
GCAGGGTCACAGGTGTGCTCAGCGGGAACACAGAGACTTCGATGGTCTTC
AGAAGGCAGGAGCATAGATGGGCGGATGGGACATGAATGGCAGGAAATGT
GAAGGAGAAAGATGGAGGGATGACAATGTTGACGACATCTTGCTGAATTC
TTCTTGGAGCACACCCGTTCCTCTAGGTGCTGCGCCTTGGGGTATCGCAC
ACACAGGCATGCACCAGGCCTTCGACCCCGGGAAGGCCGAGGTCTTTTCC
GCTTCAAAAGCCCAAATTTGTGATATTGATGACCGCAGTAGCAACTTGCA
CAGTCATAAAGGTGCGGCCTTCCACTGGGACGATGACCACGACTCCCTCT
CTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCGACCGCGTATGTGACCTT
CCCAGTGGTACCTGTGACGTTCCTTTTGGAACGACCCCTGCTTTAGAAGC
ACGTGACACGCTGGTGTCGGCTTCTCCAGGTTGTTCGGACGCTGTCGCGA
TGCCTCCTGCTGACCCGCGCAGGTCGCCTACCGTCATGTCCGAGGCCCTT
GCTGCCGAGTTGGTGGGCGTCATGTCTCAATGCTGTGCCCGCCTGCAAGA
CGATGAGGGCAACGGGGAGGACGGGGAAGGCAGGAAGGACGACGTTTTGC
GGGCATGCGTCTGGATTCCTTGCCTCCCCCCCCCGCGCAACTCGCGTGAC
GTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAAGAGCATCGCGAGGAGAG
GCCAAGCGAGCAATTTTTCACGATGATCTGCCGGCTCATGGGTCGGAGGG
ATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTCGCCACGCGGTCTTACCC
CGCTTGCTTCGTCTTCAG back to top
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