EWM24366.1, cds6300 (CDS) Nannochloropsis gaditana

Overview
NameEWM24366.1
Unique Namecds6300
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:232566..233366 -
Alignment locationCM002468.1:231622..232254 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24366.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100246g11.10061.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:232566..233366 -
CM002468.1supercontigCM002468.1:231622..232254 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
[Close]
BLAST of EWM24366.1 vs. NCBI_GenBank
Match: gi|585105763|gb|EWM24366.1| (hypothetical protein Naga_100246g11 [Nannochloropsis gaditana])

HSP 1 Score: 959.133 bits (2478), Expect = 0.000e+0
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0 
Query:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVGVADQGGRQGHRCAQREHRDFDGLQKAGA 477
            MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVGVADQGGRQGHRCAQREHRDFDGLQKAGA
Sbjct:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVGVADQGGRQGHRCAQREHRDFDGLQKAGA 477
[Close]
BLAST of EWM24366.1 vs. NCBI_GenBank
Match: gi|585105762|gb|EWM24365.1| (hypothetical protein Naga_100246g11 [Nannochloropsis gaditana])

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 448/449 (99.78%), Postives = 448/449 (99.78%), Query Frame = 0 
Query:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVG 449
            MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALE G
Sbjct:    1 MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGG 449
[Close]
BLAST of EWM24366.1 vs. NCBI_GenBank
Match: gi|553191778|ref|XP_005855453.1| (hypothetical protein NGA_0097300, partial [Nannochloropsis gaditana CCMP526] >gi|422293612|gb|EKU20912.1| hypothetical protein NGA_0097300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 401/402 (99.75%), Postives = 401/402 (99.75%), Query Frame = 0 
Query:   48 MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEVG 449
            MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALE G
Sbjct:    1 MHQAFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSLLLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADPRRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWIPCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGLVRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQPAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGWDLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLEHGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGG 402
The following BLAST results are available for this feature:
BLAST of EWM24366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105763|gb|EWM24366.1|0.000e+0100.00hypothetical protein Naga_100246g11 [Nannochlorops... [more]
gi|585105762|gb|EWM24365.1|0.000e+099.78hypothetical protein Naga_100246g11 [Nannochlorops... [more]
gi|553191778|ref|XP_005855453.1|0.000e+099.75hypothetical protein NGA_0097300, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6315rna6315Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications