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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100246g11.10060.mrna |
| Orig protein id | gnl|cribi|Naga_100246g11.10060 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:231029..233550 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6314 ID=rna6314|Name=rna6314|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
ATGGAGGTCTCGTCTCGACCCGTCGCCCGTCATTTGCTCTTTTGCTTCTT
CCTTTCCGCTCTCCTTCTCCACGTACAACTGCCCACTGCGACCACCACGA
CAAATATCATGCTTTCATGTGCCGTGCGTAAGCATGTCCCGCATATTTCT
GGATTTCGCACTCGGTTATGCTTTGCGCCGTGGCGACTCCGAGAGACCGC
AACTTCCACCTCCCACCGTCGTCCGTCCTCCTCCCTGGACCGAGTAGCGC
CATCCCACGTTCTAAGAGTATCAAGCAGGAGCAGCAGTAGTAGTAATAGT
AATGAGCAGGCTAGGAAAGGGCCGGGGAGATCGAAAGCCACATCGAAATC
TCCGCCTCGAGGCGCGAAACGTGGTGGGAAAAGTAGCCGCTCCTTGTCCA
GTGCATCTTCCTCCATGGCGTCCCCGGAAAACGAGAGGGCCGTGGCCGAC
ATCATCGGGAAAAGGACGGAGGCCGGGAAGAAGGCGGGCGGCCTGGAGGG
GTCGCTGGTCCGGGAGAGGGATATGTTGATCTCAGAGGACGCGGGTAGAA
TGGCGCCCCGGGAGGAGGAAAAGGCCGAGAACGATGACGCAAGCGACGGC
GGGAAGAGCCAGCATGGCAGCAATCAATCACTACCTCTCCTTCTTTTACC
ATCTTCTCCCCCCTCGCCTTTCACCAGTCCCTCCCCTCCTCCCTCCTCCC
CTTTCGATCTGCCCGACGACCACCTCGCTGGTCACCTTCAACGCCTCTAC
GCCGGCAGCCAACCGCCTTCCCCTTCCTCCTCTCTGGGCCCTGATACCTT
GCATCCCTACTGGTTGAAGCGCTTGTCGATGCTTCAACGTCCGGCGGCGC
GGGCGCTGGTGTCGCAGATCCTCCCCACGAACCCTTTGGGCTTCGATGCC
GGCCCCACTCTGTCCCAGCGGCGCGGCACTCTCTACGACTTTGTGCTCAC
GCAAAAAAAAGCCCACCCTGAAAAAGTGATCTTGACCCGGGTGGGTGAAT
TCTACGAGACCTACGGCGTGGATGCTATCATGCTGGTCGAATACGCAGGG
CTCAACCCCATGGGGAACAAGGCCAAGGCGGGCTGCCCCGTCAAGAACGT
GCAGGCGACCCTCGATGGCCTCACGTCCGCGGGCCTCACTGTCGCTGTGA
TAGAGGAAATAAGCGATTTGGATTCCGCTTCCCCCCGAACCAGCAAGCTC
AAAAGTCGCCTGCTCTCCCAAATCGTCTCCCCGGGCGCTTCAACTTACCT
GCCGTGA back to topprotein sequence of rna6314 >rna6314-protein ID=rna6314-protein|Name=rna6314|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MGGWDMNGRKCEGERWRDDNVDDILLNSSWSTPVPLGAAPWGIAHTGMHQ
AFDPGKAEVFSASKAQICDIDDRSSNLHSHKGAAFHWDDDHDSLSRRLSL
LLLEFDRVCDLPSGTCDVPFGTTPALEARDTLVSASPGCSDAVAMPPADP
RRSPTVMSEALAAELVGVMSQCCARLQDDEGNGEDGEGRKDDVLRACVWI
PCLPPPRNSRDVPPQGGFPLRQEHREERPSEQFFTMICRLMGRRDAPVGL
VRQFCRHAVLPRLLRLQGAASRSLIDALARLASLRPSLVLTHVLVPLLCQ
PAGSLGSVQCEAVARVIKQGCFGMGEEGSGGFGGRRGVYLEKLLRGLCGW
DLSLNLGDERGNGAQERKSPEVVEGEESRGLEGNEKEGRSEKRRGGGGLE
HGRAMLYPVCEWTDVTLPVLTAVLGQRPTLSDETVLVVLERLRAALEGGG
DLMHSFKLAALINALQSKYGPQMQLFPTVMRHIISICEEGEGRDGAKGGC
SNSWSKNHKNGGGATLIRNTLRKVILSISE back to topmRNA from alignment at CM002468.1:231029..233550- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6314 ID=rna6314|Name=rna6314|organism=Nannochloropsis gaditana|type=mRNA|length=2522bp|location=Sequence derived from alignment at CM002468.1:231029..233550- (Nannochloropsis gaditana)
GCCACGGGACAAAAATCATAGGACACGCACAGCCGTAGAGAGCTCCTTTG
CCCTCTAACATGTCGTTTTCAATATACCTCGGGTCGTCATGTGTTATTTC
TATGTACATTTATCTCCTTCCCCCGTCCCGACCTCATTCTTATCAAGACA
CTTGTCATGACATACATCGTTTAGGCTCGAGCGCATGGGCGGATGGGACA
TGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGAC
GACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGC
GCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGA
AGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGAC
CGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGA
TGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCG
ACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACG
ACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTG
TTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCG
TCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGC
TGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAG
GAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCC
CGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAA
GAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCG
GCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTC
GCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGTGAGCCCGGCGCGT
CCCTCGGACAGTCAGCTTGCCTGCACAGACGTTCGTATCATTGCTTTTGT
TGTCTTCCTTGTGTCTTTTGGCCTCCCTTTTCCCAAAGAGTGCTCCTGAG
GGGTCGATTTGTTCCTTCCTTGCCCCCCTCCTCGGCCGCCCGGTCCCAGA
TCATTCTTCATCGACCGCCGCGCCTCGCTCTCTTTTCACCTGACTTTCTT
GGTGATATCCCAACTCGCTCCTCTCTCCCTCTCACCCATTCCTTTCTTTC
ATTCACCTTCCCTCTCCCCCTGCCTCCCTTTCTCTGGCCTGCCCAGGGAG
CCGCCTCGCGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGT
CCCTCCCTTGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGC
GGGGTCCCTGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGC
AGGGATGTTTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGG
AGAGGCGTGTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTT
GTCGCTGAATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAA
GTCCAGAGGTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAG
AAGGAAGGGAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGG
GAGGGCGATGCTTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGG
TGCTGACGGCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTA
CTGGTTGTACTGGAGCGACTACGGGCTGCATTGGAGGTGGGTGTTGCGGA
CCAGGGGGGGCGGCAGGGTCACAGGTGTGCTCAGCGGGAACACAGAGACT
TCGATGGTCTTCAGAAGGCAGGAGCATAGCTGCATAGGGGAAGAGAGATA
CTGTATTGATTAGATTTTATGCCTTTCCACACATGTATATGTGGTGATTG
GGAGGATTTCGGTCCATGCAAATGCTCATGCATCCTTGCAACCTTTTCCC
ACATGCTTTTTATTTTTTACTCTTGACATCAGGGCGGCGGTGATCTGATG
CATTCTTTCAAGCTCGCTGCATTAATAAATGCGCTTCAAAGTAAGTACGG
CCCTCAAATGCAACTTTTTCCCACCGTGATGCGTCACATTATCTCAATAT
GTGAGGAGGGGGAGGGAAGGGACGGTGCAAAAGGGGGCTGCAGCAACAGT
TGGAGCAAGAATCACAAAAATGGCGGTGGGGCAACATTGATACGCAACAC
CCTACGTAAAGTTATCCTGTCAATATCCGAATAAAAACTCAAAACTTGAA
AATGTGAATTGGAAAAATGTGCAGTTGGAGTAGGATAAATCAATTTTTCC
GTGATGTTCACAACAAAGAGTAGCCTTGTTTACCTTTAATTTTTCGTAGG
ATAACGTGGTCAATTTTCAGTATCGGTCACAAGATAAAATGAGGCAACAA
ATGGAAATGAAATGACGCCCAT back to topCoding sequence (CDS) from alignment at CM002468.1:231029..233550- >rna6314 ID=rna6314|Name=rna6314|organism=Nannochloropsis gaditana|type=CDS|length=4779bp|location=Sequence derived from alignment at CM002468.1:231029..233550- (Nannochloropsis gaditana)
GGCGGCGGTGATCTGATGCATTCTTTCAAGCTCGCTGCATTAATAAATGC
GCTTCAAAGTAAGTACGGCCCTCAAATGCAACTTTTTCCCACCGTGATGC
GTCACATTATCTCAATATGTGAGGAGGGGGAGGGAAGGGACGGTGCAAAA
GGGGGCTGCAGCAACAGTTGGAGCAAGAATCACAAAAATGGCGGTGGGGC
AACATTGATACGCAACACCCTACGTAAAGTTATCCTGTCAATATCCGAAT
AAGGAGCCGCCTCGCGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCC
CTCCGTCCCTCCCTTGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCA
GCCGGCGGGGTCCCTGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGA
TCAAGCAGGGATGTTTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGT
GGGAGGAGAGGCGTGTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTG
GGACTTGTCGCTGAATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGA
GAAAAAGTCCAGAGGTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGG
AATGAGAAGGAAGGGAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGA
GCATGGGAGGGCGATGCTTTACCCTGTGTGTGAGTGGACAGATGTAACAC
TGCCGGTGCTGACGGCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAG
ACCGTACTGGTTGTACTGGAGCGACTACGGGCTGCATTGGAGATGGGCGG
ATGGGACATGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACA
ATGTTGACGACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTA
GGTGCTGCGCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGA
CCCCGGGAAGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATA
TTGATGACCGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCAC
TGGGACGATGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCT
CGAGTTCGACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTT
TTGGAACGACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCT
CCAGGTTGTTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTC
GCCTACCGTCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGT
CTCAATGCTGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGG
GAAGGCAGGAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCT
CCCCCCCCCGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTT
TACGGCAAGAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATG
ATCTGCCGGCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCA
GTTTTGTCGCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGGCGGCG
GTGATCTGATGCATTCTTTCAAGCTCGCTGCATTAATAAATGCGCTTCAA
AGTAAGTACGGCCCTCAAATGCAACTTTTTCCCACCGTGATGCGTCACAT
TATCTCAATATGTGAGGAGGGGGAGGGAAGGGACGGTGCAAAAGGGGGCT
GCAGCAACAGTTGGAGCAAGAATCACAAAAATGGCGGTGGGGCAACATTG
ATACGCAACACCCTACGTAAAGTTATCCTGTCAATATCCGAATAAGGAGC
CGCCTCGCGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGTC
CCTCCCTTGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGCG
GGGTCCCTGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGCA
GGGATGTTTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGGA
GAGGCGTGTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTTG
TCGCTGAATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAAG
TCCAGAGGTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAGA
AGGAAGGGAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGGG
AGGGCGATGCTTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGGT
GCTGACGGCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTAC
TGGTTGTACTGGAGCGACTACGGGCTGCATTGGAGATGGGCGGATGGGAC
ATGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGA
CGACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTG
CGCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGG
AAGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGA
CCGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACG
ATGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTC
GACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAAC
GACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTT
GTTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACC
GTCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATG
CTGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCA
GGAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCC
CCGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCA
AGAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCC
GGCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGT
CGCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGGCGGCGGTGATCT
GATGCATTCTTTCAAGCTCGCTGCATTAATAAATGCGCTTCAAAGTAAGT
ACGGCCCTCAAATGCAACTTTTTCCCACCGTGATGCGTCACATTATCTCA
ATATGTGAGGAGGGGGAGGGAAGGGACGGTGCAAAAGGGGGCTGCAGCAA
CAGTTGGAGCAAGAATCACAAAAATGGCGGTGGGGCAACATTGATACGCA
ACACCCTACGTAAAGTTATCCTGTCAATATCCGAATAAGGAGCCGCCTCG
CGTTCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGTCCCTCCCT
TGTCCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGCGGGGTCCC
TGGGCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGCAGGGATGT
TTTGGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGGAGAGGCGT
GTACCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTTGTCGCTGA
ATCTCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAAGTCCAGAG
GTCGTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAGAAGGAAGG
GAGGAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGGGAGGGCGA
TGCTTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGGTGCTGACG
GCGGTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTACTGGTTGT
ACTGGAGCGACTACGGGCTGCATTGGAGATGGGCGGATGGGACATGAATG
GCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGACGACATC
TTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGCGCCTTG
GGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGAAGGCCG
AGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGACCGCAGT
AGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGATGACCA
CGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCGACCGCG
TATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACGACCCCT
GCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTGTTCGGA
CGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCGTCATGT
CCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGCTGTGCC
CGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAGGAAGGA
CGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCCCGCGCA
ACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAAGAGCAT
CGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCGGCTCAT
GGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTCGCCACG
CGGTCTTACCCCGCTTGCTTCGTCTTCAG back to top
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